% SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 07/18/05_14:54:13 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0295.t2k-80-60-80-str2+near-backbone-11 Host: lopez.cse.ucsc.edu Mon May 22 21:03:50 2006 % karplus Dir: /projects/compbio/experiments/protein-predict/casp7/T0295/S177-F275 % --------------------------------------------------------------------- % Inserted Files: % Database Files: /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.str2s,/projects/compbio/experiments/models.97/indexes/t2k.near-backbone-11s % MODLIBMOD T0295.t2k-80-60-80-str2+near-backbone-11 T0295.t2k-80-60-80-str2+near-backbone-11 model number 1 % Calibration data for 14787 database sequences % 2510 of 14787 scores > calibrate_threshold (0) used. trackmod T0295.t2k.w0.5.mod,T0295.t2k.str2.mod,T0295.t2k.near-backbone-11.mod trackcoeff 0.8,0.6,0.8 alphabet protein,STR2,NEAR-BACKBONE-11 lambda 0.881478 tau 0.905157 sw 2 dpstyle 0 jumpinprob 1.000000 jumpoutprob 1.000000 subtractnull 4 FIMmethodscore -6 insertmethodscore 0 adjust_score 2 ENDMODLIBMOD