# List of top-scoring protein chains for T0295.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq9A 285 1.74e-28 1kdhA 363 5.80e-01 a.60.6.1,a.60.12.1,d.218.1.2 72349,75882,75883 1jmsA 381 6.02e-01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 8jdwA 386 6.36e-01 1jdw d.126.1.2 41132 2jdxA 385 6.38e-01 1jdw d.126.1.2 41139 4jdwA 423 7.52e-01 1jdw d.126.1.2 41137 1jdw 423 7.61e-01 1jdw d.126.1.2 41129 1h6oA 204 7.69e-01 a.146.1.1 60689 1vb3A 428 1.80e+00 2ftcK 98 4.71e+00 1w7jB 151 4.96e+00 1nxuA 333 5.10e+00 c.122.1.1 86389 1s20A 340 5.27e+00 c.122.1.1 98356 1fp1D 372 6.58e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 1qdlA 422 6.75e+00 1qdlA d.161.1.1 42088 1jc2A 76 7.43e+00 a.39.1.5 62862 1yadA 221 7.87e+00 1do0A 442 8.51e+00 1do0A c.37.1.20 32432 1g4aE 443 8.53e+00 1do0A c.37.1.20 32444 1e94E 449 8.58e+00 1do0A c.37.1.20 32442 2fnpA 124 1.11e+01 2crpA 150 1.13e+01 1fzpB 123 1.25e+01 1fznD a.4.5.28 19008 2frhA 127 1.30e+01 1cbg 490 1.30e+01 1e70M c.1.8.4 28933 1g2bA 62 1.39e+01 1tud b.34.2.1 24488 1r2uA 89 1.40e+01 a.39.1.5 104783 1a3aA 148 1.42e+01 1a3aA d.112.1.1 40917 1tnw 162 1.44e+01 1ncx a.39.1.5 17235 1ap4 89 1.50e+01 1ncx a.39.1.5 17253 1p9bA 442 1.56e+01 c.37.1.10 94385 1m5xA 170 1.60e+01 d.95.2.1 84844 2f6kA 307 1.70e+01 1yewA 382 1.71e+01 1zc8K 130 1.72e+01 1a8y 367 1.78e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1oejA 193 1.80e+01 b.60.1.4 92798 1ybjA 178 1.85e+01 2fewA 148 1.91e+01 1yf3A 259 1.94e+01 1txlA 215 2.05e+01 b.60.1.4 107429 1s7dA 216 2.07e+01 b.60.1.4 105348 1dk0A 188 2.08e+01 1b2vA d.35.1.1 38530 1yfjA 259 2.16e+01 1k8hA 133 2.30e+01 b.111.1.1 72176 1gq2A 555 2.34e+01 c.2.1.7,c.58.1.3 70308,70309 1q0sA 259 2.37e+01 c.66.1.28 95509 1i4wA 353 2.43e+01 c.66.1.24 66028 1i5dA 191 2.71e+01 1b3qA d.122.1.3 61783 1jy5A 212 2.72e+01 d.124.1.1 71940 1i58A 189 2.72e+01 1b3qA d.122.1.3 61773 2bisA 440 2.83e+01 1n9dA 199 2.83e+01 a.26.1.1 85464 2blcA 238 2.84e+01 1ctj 89 2.93e+01 1ctj a.3.1.1 15798 1nzpA 87 2.94e+01 a.60.6.1 92385 2mysC 149 2.97e+01 1wdcC a.39.1.5 17323 1mvwC 147 3.01e+01 i.15.1.1 79525 1fy1A 225 3.06e+01 b.47.1.2 65065 1qndA 123 3.09e+01 1qndA d.106.1.1 40794 2bl9A 238 3.13e+01 2ctn 89 3.28e+01 1ncx a.39.1.5 17242 1bk2 57 3.36e+01 1tuc b.34.2.1 24495 1la0A 161 3.41e+01 a.39.1.5 77864 1pwt 61 3.44e+01 1tud b.34.2.1 24490 1wrkA 88 3.46e+01 2bzgA 232 3.55e+01 2gjmA 583 3.56e+01 2gj1A 583 3.80e+01 1sglA 209 3.80e+01 d.124.1.1 105536 1p6vA 156 3.81e+01 b.111.1.1 94191 1wffA 85 3.88e+01 1negA 83 3.89e+01 b.34.2.1 80425 1avsA 90 3.90e+01 1cll a.39.1.5 17226 1qkwA 62 3.93e+01 1tuc b.34.2.1 24494 1qkxA 62 3.98e+01 1tuc b.34.2.1 24491 1v9wA 130 4.07e+01 c.47.1.16 108453 1hd3A 62 4.15e+01 b.34.2.1 65802 2bmkB 226 4.26e+01 1ldkD 133 4.33e+01 a.157.1.1,d.42.1.1 73855,73856 1rjbA 344 4.39e+01 d.144.1.7 97557 1u06A 62 4.42e+01 1v5oA 102 4.56e+01 d.15.1.1 108381 1ponB 36 4.58e+01 1ponB 1fs1B 141 4.74e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1uueA 62 4.83e+01 b.34.2.1 100005 1npqA 90 4.85e+01 a.39.1.5 85983 1o50A 157 4.85e+01 d.37.1.1,d.37.1.1 92478,92479 5tnc 162 5.07e+01 1ncx a.39.1.5 17246 4tnc 162 5.11e+01 1ncx a.39.1.5 17228 1smg 90 5.20e+01 1ncx a.39.1.5 17234 1e6hA 62 5.21e+01 b.34.2.1 70084 1sqiA 393 5.32e+01 d.32.1.3,d.32.1.3 105914,105915 1r89A 437 5.38e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2fpnA 216 5.40e+01 1aj4 161 5.46e+01 1ncx a.39.1.5 17244 1top 162 5.46e+01 1ncx a.39.1.5 17223 1dtlA 161 5.49e+01 1ncx a.39.1.5 17229 1h8kA 62 5.58e+01 b.34.2.1 70915 1hqvA 191 5.60e+01 1hqvA a.39.1.8 61160 1l1jA 239 5.88e+01 b.47.1.1 84516 1a2xA 159 6.17e+01 1ncx a.39.1.5 17251 1e7oA 62 6.26e+01 b.34.2.1 83169 1e6gA 62 6.40e+01 b.34.2.1 70083 1l1mA 62 6.40e+01 a.35.1.5 73474 1w0pA 781 6.42e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1unlA 292 6.64e+01 1h4lA 292 6.71e+01 d.144.1.7 70871 1trf 76 6.73e+01 1ncx a.39.1.5 17247 1gks 78 6.78e+01 1cc5 a.3.1.1 15909 1oahA 519 7.13e+01 a.138.1.3 86736 1js1X 324 7.23e+01 c.78.1.1,c.78.1.1 71834,71835 2furA 209 7.29e+01 1bjfA 193 7.43e+01 1rec a.39.1.5 17331 1kit 757 7.54e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1x31D 99 7.55e+01 1tcf 159 7.71e+01 1ncx a.39.1.5 17250 1h8dH 260 7.73e+01 5ptp 1fcpA 705 7.79e+01 1by5A f.4.3.3 43805 1kr0A 273 7.92e+01 c.1.8.5 68845 2fcpA 723 7.97e+01 1by5A f.4.3.3 43802 1hlvA 131 7.99e+01 a.4.1.7,a.4.1.7 65854,65855 1olrA 224 8.20e+01 b.29.1.11 93330 2ew2A 316 8.30e+01 1txfA 258 8.32e+01 2f34A 258 8.33e+01 1ycjA 257 8.33e+01 1z1zA 131 8.34e+01 2amiA 96 8.44e+01 1m7yA 435 8.46e+01 c.67.1.4 78761 1b8gA 429 8.48e+01 1b8gA c.67.1.4 34499 1kyoI 57 8.51e+01 f.23.14.1 73261 1dq3A 454 8.51e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1uunA 184 8.91e+01 f.6.1.2 100012 1qwrA 319 8.97e+01 b.82.1.3 96491 2astA 159 9.00e+01