# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1a3aA 148 2.29e-02 1a3aA d.112.1.1 40917 1nxuA 333 7.35e-02 c.122.1.1 86389 1fs1B 141 1.38e-01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1jmsA 381 2.90e-01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1j8uA 325 3.75e-01 d.178.1.1 71611 1xqoA 256 5.84e-01 1cnzA 363 6.89e-01 1cnzA c.77.1.1 35061 1gcvB 136 7.64e-01 1cg5B a.1.1.2 15589 1p1mA 406 1.21e+00 b.92.1.4,c.1.9.9 87696,87697 1t4hA 290 1.34e+00 d.144.1.7 106420 2bjfA 329 1.36e+00 1i4wA 353 1.42e+00 c.66.1.24 66028 1dp3A 55 1.73e+00 1dp3A a.55.1.2 59128 1dk0A 188 1.97e+00 1b2vA d.35.1.1 38530 1m7yA 435 2.23e+00 c.67.1.4 78761 1hlvA 131 2.23e+00 a.4.1.7,a.4.1.7 65854,65855 1i58A 189 2.85e+00 1b3qA d.122.1.3 61773 1vljA 407 2.86e+00 e.22.1.2 108832 1lqtA 456 2.88e+00 c.3.1.1,c.4.1.1 74198,74199 1mgtA 174 3.10e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1cy5A 97 3.10e+00 1cy5A a.77.1.3 18430 1h8dH 260 3.54e+00 5ptp 1a7s 221 3.92e+00 1a7s b.47.1.2 26284 1senA 164 3.98e+00 c.47.1.1 105465 1ockA 412 4.36e+00 c.117.1.1 86802 1eljA 381 4.45e+00 4mbp c.94.1.1 35791 1i5nA 146 4.94e+00 1i5nA a.24.10.3 61805 1q0rA 298 5.76e+00 c.69.1.28 95508 1g8kA 825 5.77e+00 1g8jA b.52.2.2,c.81.1.1 26920,35328 1h3lA 87 6.34e+00 a.177.1.1 76639 1rrmA 386 8.03e+00 e.22.1.2 105081 1j75A 67 9.00e+00 a.4.5.19 62673 1g2nA 264 9.19e+00 1lbd a.123.1.1 60227 1ym3A 215 9.25e+00 1wmhB 86 9.73e+00 1fiqC 763 9.89e+00 1fiqC d.41.1.1,d.133.1.1 38588,41418 1bob 320 1.12e+01 1bob d.108.1.1 40816 1vjvA 415 1.13e+01 d.3.1.9 108632 1jalA 363 1.14e+01 c.37.1.8,d.15.10.2 84138,84139 1huw 166 1.15e+01 1huw a.26.1.1 16831 1bu6O 501 1.20e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1cjcA 460 1.21e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1abv 134 1.27e+01 1abv a.70.1.1 18317 1i7dA 659 1.36e+01 1d6mA e.10.1.1 61886 1e3oC 160 1.40e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1a6m 151 1.52e+01 1a6m a.1.1.2 15018 1dmhA 311 1.54e+01 1dmhA b.3.6.1 22633 1jy5A 212 1.64e+01 d.124.1.1 71940 1fp1D 372 1.78e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1elvA 333 1.81e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1cxqA 162 1.88e+01 1cxqA c.55.3.2 33621 1cpcA 162 1.90e+01 1cpcA a.1.1.3 15643 1f20A 435 1.95e+01 b.43.4.1,c.25.1.4 64932,64933 1pyoB 105 1.96e+01 1sgwA 214 2.00e+01 c.37.1.12 105541 1izcA 339 2.06e+01 c.1.12.5 83838 1mtyB 384 2.07e+01 1mtyB a.25.1.2 16740 1ng6A 148 2.07e+01 a.182.1.1 85670 1b43A 340 2.11e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1hr6A 475 2.20e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1it2A 146 2.20e+01 a.1.1.2 66365 1fs7A 485 2.21e+01 1qdbA a.138.1.3 19691 1jcfA 344 2.24e+01 c.55.1.1,c.55.1.1 62878,62879 1g2cB 43 2.40e+01 1g2cB 1j6rA 214 2.44e+01 d.173.1.2 71598 1ju2A 536 2.46e+01 c.3.1.2,d.16.1.1 77169,77170 1h8eD 482 2.48e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1fcyA 236 2.50e+01 2lbd a.123.1.1 19282 1b4pA 217 2.51e+01 a.45.1.1,c.47.1.5 83158,83159 1fnnA 389 2.53e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1gjnA 153 2.58e+01 a.1.1.2 70191 1g73A 162 2.58e+01 1fewA a.7.4.1 16332 1ddjA 247 2.63e+01 5ptp b.47.1.2 26362 1ojrA 274 2.65e+01 c.74.1.1 93147 1dkzA 219 2.67e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1ctj 89 2.69e+01 1ctj a.3.1.1 15798 1qwgA 251 2.72e+01 c.1.27.1 96473 1fnd 314 2.78e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1jboB 172 2.83e+01 a.1.1.3 84151 1oxjA 173 2.89e+01 a.60.1.2,a.118.1.13 87517,87518 1h3nA 878 3.09e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1q7eA 428 3.17e+01 c.123.1.1 96035 1tqhA 247 3.26e+01 c.69.1.29 107225 1eo1A 124 3.28e+01 1eo1A c.55.5.1 33739 1fh9A 312 3.31e+01 1taxA c.1.8.3 28913 1f0nA 285 3.39e+01 1dqyA c.69.1.3 34636 1u60A 310 3.67e+01 e.3.1.2 107692 1c02A 166 3.77e+01 1qspA a.24.10.2 16633 2evaA 307 3.78e+01 1byrA 155 3.84e+01 1byrA d.136.1.1 41450 1alvA 173 3.89e+01 1alvA a.39.1.8 17370 1a4pA 96 3.89e+01 1b4cA a.39.1.2 17176 1bw0A 416 3.91e+01 1bw0A c.67.1.1 34385 1dqzA 280 3.92e+01 1dqyA c.69.1.3 34638 1jeoA 180 3.94e+01 c.80.1.3 66611 1ejxA 100 3.97e+01 d.8.1.1 83182 1cfzA 162 4.00e+01 1cfzA c.56.1.1 33754 2nlrA 234 4.04e+01 2nlrA b.29.1.11 24344 1ddgA 374 4.04e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1eyhA 144 4.17e+01 1eduA a.118.9.1 19214 1pvmA 184 4.23e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1pv5A 264 4.27e+01 d.251.1.1 95150 1guxB 152 4.30e+01 1guxB a.74.1.3 18389 1g4yB 101 4.32e+01 1g4yB f.15.1.1 60251 1ggzA 148 4.36e+01 a.39.1.5 70176 1ju3A 583 4.37e+01 b.18.1.13,c.69.1.21 67300,67301 4ubpA 101 4.45e+01 1ubpA d.8.1.1 37352 1mr7A 209 4.49e+01 b.81.1.3 91430 1evyA 366 4.53e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1dcs 311 4.54e+01 1dcs b.82.2.1 28124 1ihgA 370 4.57e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1d8wA 426 4.66e+01 1de5A c.1.15.2 29394 1im5A 180 4.75e+01 c.33.1.3 66211 1i36A 264 4.94e+01 a.100.1.8,c.2.1.6 71108,71109 1lwbA 122 5.03e+01 a.133.1.3 84728 1bx1A 314 5.04e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1hw1A 239 5.07e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1tfe 145 5.20e+01 1tfe d.43.1.1 38680 1hkhA 279 5.31e+01 c.69.1.12 90628 1cunA 213 5.32e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1q8fA 313 5.38e+01 c.70.1.1 96203 1j4aA 333 5.42e+01 c.2.1.4,c.23.12.1 71502,71503 1khcA 147 5.44e+01 b.34.9.2 68608 1tl9A 339 5.46e+01 1a0jA 223 5.61e+01 5ptp b.47.1.2 26002 1gpeA 587 5.72e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1qy1A 174 5.77e+01 b.60.1.1 96568 1g3qA 237 5.79e+01 1hyqA c.37.1.10 60237 1jjtA 228 5.81e+01 1a7tA d.157.1.1 63139 1h6gA 256 5.83e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1qe3A 489 5.94e+01 2bce c.69.1.1 34630 1v54H 85 6.09e+01 a.51.1.1 100329 1fseA 74 6.11e+01 1fseA a.4.6.2 60000 1apyA 162 6.13e+01 1apyA d.153.1.5 42004 3seb 238 6.15e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1p5zB 263 6.15e+01 c.37.1.1 87815 1hulA 108 6.22e+01 1hulA a.26.1.2 16865 1mzbA 136 6.25e+01 a.4.5.42 91497 1fadA 99 6.30e+01 1fadA a.77.1.2 18428 1r6jA 82 6.32e+01 b.36.1.1 97151 1wvfA 520 6.34e+01 1hx1B 114 6.36e+01 1hx1B a.7.7.1 61350 1g6hA 257 6.40e+01 1gajA c.37.1.12 60318 1jdpA 441 6.41e+01 c.93.1.1 62906 1woqA 267 6.49e+01 c.55.1.10,c.55.1.10 109462,109463 1i4fA 275 6.51e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1kq3A 376 6.59e+01 e.22.1.2 68790 1cjxA 357 6.62e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1xjuA 163 6.63e+01 1hbnA 549 6.69e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1mqvA 125 6.97e+01 a.24.3.2 79415 1ee4A 423 7.02e+01 1ee4A a.118.1.1 19128 1jbkA 195 7.04e+01 c.37.1.20 71631 1qxyA 252 7.12e+01 d.127.1.1 96565 1kveA 63 7.17e+01 1kveA d.70.1.2 39590 1bgp 309 7.18e+01 1bgp a.93.1.1 18690 1j2gA 319 7.36e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1ecmA 109 7.59e+01 1ecmA a.130.1.1 19492 1jb9A 316 7.63e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1jdc 429 7.65e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1geqA 248 7.75e+01 2tysA c.1.2.4 28589 1ji7A 89 7.89e+01 a.60.1.1 71682 1eteA 134 7.90e+01 1eteA a.26.1.2 16869 1io0A 185 7.92e+01 c.10.1.1 76753 1iyjB 817 7.96e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1ooeA 236 8.03e+01 c.2.1.2 87196 1e43A 483 8.03e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1idpA 172 8.04e+01 d.17.4.1 83685 1bli 483 8.44e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1gk9B 557 8.45e+01 1am9A 82 8.52e+01 1am9A a.38.1.1 17140 1gr0A 367 8.59e+01 c.2.1.3,d.81.1.3 70379,70380 1bqbA 301 8.60e+01 1hyt d.92.1.2 58962 1bg6 359 8.60e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1wkcA 184 8.65e+01 1dw0A 112 8.73e+01 1dw0A a.3.1.1 15911 1eemA 241 8.77e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1dq3A 454 8.82e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586