# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i4wA 353 8.14e-02 c.66.1.24 66028 1dk0A 188 3.08e-01 1b2vA d.35.1.1 38530 1a3aA 148 1.05e+00 1a3aA d.112.1.1 40917 1h8dH 260 1.10e+00 5ptp 1mqvA 125 1.79e+00 a.24.3.2 79415 1avsA 90 2.20e+00 1cll a.39.1.5 17226 1jdw 423 2.54e+00 1jdw d.126.1.2 41129 1kaeA 434 2.63e+00 c.82.1.2 72247 1m65A 245 3.27e+00 c.6.3.1 84847 1exrA 148 3.31e+00 1cll a.39.1.5 17299 1psrA 100 3.46e+00 1psrA a.39.1.2 17180 1dq3A 454 3.53e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1fsgA 233 3.78e+00 1qk3A c.61.1.1 34029 1byrA 155 3.84e+00 1byrA d.136.1.1 41450 1a7s 221 3.95e+00 1a7s b.47.1.2 26284 1i58A 189 3.97e+00 1b3qA d.122.1.3 61773 1mgtA 174 4.32e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1g2hA 61 4.98e+00 1g2hA a.4.1.12 60224 1cpt 412 5.02e+00 1cpt a.104.1.1 18968 1qy1A 174 5.07e+00 b.60.1.1 96568 1hlvA 131 5.32e+00 a.4.1.7,a.4.1.7 65854,65855 1fs1B 141 5.99e+00 1vcbB a.157.1.1,d.42.1.1 19252,38664 1b00A 127 6.33e+00 3chy c.23.1.1 31122 1jkmB 361 6.73e+00 1jkmA c.69.1.2 34634 1a4pA 96 6.86e+00 1b4cA a.39.1.2 17176 1jy5A 212 7.39e+00 d.124.1.1 71940 1ctj 89 7.42e+00 1ctj a.3.1.1 15798 1pvgA 418 7.64e+00 d.14.1.3,d.122.1.2 95161,95162 1r6jA 82 7.72e+00 b.36.1.1 97151 1nxuA 333 8.25e+00 c.122.1.1 86389 1ispA 181 8.31e+00 c.69.1.18 76778 1g6hA 257 8.63e+00 1gajA c.37.1.12 60318 1dp7P 76 8.74e+00 1dp7P a.4.5.20 16159 1h0hB 214 8.75e+00 d.58.1.5 76437 1q7eA 428 9.19e+00 c.123.1.1 96035 1h8eD 482 9.26e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1g2bA 62 1.04e+01 1tud b.34.2.1 24488 1jalA 363 1.15e+01 c.37.1.8,d.15.10.2 84138,84139 1k20A 310 1.18e+01 c.107.1.1 68027 1ygtA 111 1.30e+01 1elvA 333 1.31e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1ecrA 309 1.47e+01 1ecrA e.2.1.1 42678 1a8y 367 1.47e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2sak 121 1.48e+01 2sak d.15.5.1 37711 1e3oC 160 1.51e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1f5mA 180 1.51e+01 1f5mB d.110.2.1 40895 1dcs 311 1.55e+01 1dcs b.82.2.1 28124 1alvA 173 1.63e+01 1alvA a.39.1.8 17370 1j75A 67 1.64e+01 a.4.5.19 62673 1pvmA 184 1.65e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1vljA 407 1.65e+01 e.22.1.2 108832 1iioA 84 1.95e+01 a.39.4.1 66150 1fp1D 372 2.00e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1a41 234 2.08e+01 1a41 d.163.1.2 42174 1uuzA 137 2.12e+01 d.233.1.1 100024 2ilk 160 2.12e+01 2ilk a.26.1.3 16885 3sdhA 146 2.15e+01 3sdhA a.1.1.2 14984 1v54H 85 2.22e+01 a.51.1.1 100329 1xx1A 285 2.23e+01 1h6kA 757 2.36e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1ggzA 148 2.52e+01 a.39.1.5 70176 1n8vA 112 2.59e+01 a.118.21.1 85457 1dg9A 157 2.65e+01 1dg9A c.44.1.1 32637 1cxqA 162 2.65e+01 1cxqA c.55.3.2 33621 1fjlA 81 2.72e+01 2hddA a.4.1.1 16017 1r89A 437 2.73e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1bl0A 129 2.74e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1aocA 175 2.75e+01 1aocA g.17.1.5 44817 1wmhB 86 2.81e+01 1kwfA 363 2.84e+01 a.102.1.2 73078 1gcvB 136 3.04e+01 1cg5B a.1.1.2 15589 2db3A 434 3.15e+01 1oxjA 173 3.17e+01 a.60.1.2,a.118.1.13 87517,87518 1dmhA 311 3.18e+01 1dmhA b.3.6.1 22633 1b3aA 67 3.19e+01 1b3aA d.9.1.1 37410 1jmsA 381 3.20e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1ddjA 247 3.24e+01 5ptp b.47.1.2 26362 1v8cA 168 3.41e+01 d.15.3.1,d.129.5.1 100495,100496 1tuaA 191 3.62e+01 d.51.1.1,d.51.1.1 107321,107322 1c44A 123 3.62e+01 1qndA d.106.1.1 40795 1jd1A 129 3.63e+01 1qu9A d.79.1.1 62890 1bby 69 3.69e+01 2bby a.4.5.15 16149 1qb7A 236 3.70e+01 1qb7A c.61.1.1 34087 1brwA 433 3.73e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1cy5A 97 3.74e+01 1cy5A a.77.1.3 18430 1m15A 357 3.79e+01 a.83.1.1,d.128.1.2 78368,78369 1jbkA 195 3.99e+01 c.37.1.20 71631 1usgA 346 4.05e+01 c.93.1.1 99864 1c3pA 375 4.25e+01 1c3pA c.42.1.2 32606 1gkmA 509 4.37e+01 a.127.1.2 70228 1fp2A 352 4.74e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1vpjA 192 4.79e+01 1jb9A 316 4.93e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1ccr 112 4.95e+01 1ycc a.3.1.1 15877 1agjA 242 5.03e+01 1agjA b.47.1.1 25827 1sqgA 429 5.13e+01 a.79.1.3,c.66.1.38 105912,105913 1aky 221 5.15e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1ydyA 356 5.18e+01 1f3mA 80 5.21e+01 1f3mA j.66.1.1 46358 1i4uA 181 5.24e+01 b.60.1.1 61732 1ie9A 259 5.28e+01 1db1A a.123.1.1 62318 1qwgA 251 5.36e+01 c.1.27.1 96473 1in6A 334 5.38e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1nz0A 118 5.54e+01 d.14.1.2 86433 1dpo 223 5.54e+01 5ptp b.47.1.2 25975 1tfzA 424 5.59e+01 d.32.1.3,d.32.1.3 106886,106887 1o2dA 371 5.60e+01 e.22.1.2 86591 1c75A 71 5.63e+01 451c a.3.1.1 15796 1g2qA 187 5.65e+01 c.61.1.1 65117 1fj2A 232 5.82e+01 1auoA c.69.1.14 34720 1tqhA 247 5.88e+01 c.69.1.29 107225 1d2nA 272 5.97e+01 1d2nA c.37.1.20 32428 1jbeA 128 6.16e+01 3chy c.23.1.1 62845 1jo0A 98 6.18e+01 d.68.4.1 77140 1gtmA 419 6.23e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1u60A 310 6.28e+01 e.3.1.2 107692 1s9uA 207 6.33e+01 a.184.1.1 105390 1in4A 334 6.35e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1uj2A 252 6.40e+01 c.37.1.6 99452 1m1nB 522 6.42e+01 c.92.2.3 78418 1dxeA 256 6.58e+01 1dxeA c.1.12.5 29310 1hc7A 477 6.86e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1nnhA 294 6.91e+01 d.104.1.1 92005 1olrA 224 6.91e+01 b.29.1.11 93330 1sgwA 214 7.03e+01 c.37.1.12 105541 1tukA 67 7.16e+01 1fqiA 147 7.19e+01 1agrE a.91.1.1 18542 1c52 131 7.22e+01 1c52 a.3.1.1 15810 1e8aA 91 7.23e+01 1b4cA a.39.1.2 17188 1x8qA 184 7.23e+01 1fseA 74 7.36e+01 1fseA a.4.6.2 60000 1ixcA 294 7.44e+01 a.4.5.37,c.94.1.1 83764,83765 1vprA 374 7.48e+01 1a0jA 223 7.52e+01 5ptp b.47.1.2 26002 1lf7A 182 7.70e+01 b.60.1.1 73878 1dzkA 157 7.78e+01 1obpA b.60.1.1 27096 1jwqA 179 7.81e+01 c.56.5.6 90921 1hpgA 187 7.84e+01 1qq4A b.47.1.1 25813 1v37A 177 7.88e+01 1jcfA 344 7.90e+01 c.55.1.1,c.55.1.1 62878,62879 1ghhA 81 7.96e+01 1ghhA d.57.1.1 38940 1wjxA 122 8.01e+01 1wb4A 297 8.03e+01 1dugA 234 8.15e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1o54A 277 8.17e+01 c.66.1.13 92482 1eayC 74 8.17e+01 1eayC d.58.24.1 39386 1gqpA 221 8.24e+01 b.18.1.9 70372 1h72C 296 8.36e+01 d.14.1.5,d.58.26.1 60712,60713 1mdc 133 8.40e+01 1hmt b.60.1.2 27198 1gvzA 237 8.63e+01 b.47.1.2 76360 1cnzA 363 8.64e+01 1cnzA c.77.1.1 35061