# TARGET T0295 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0295.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.7648 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.028 0.013 0.013 0.015 0.177 0.754 2 S 0.050 0.036 0.022 0.024 0.228 0.640 3 F 0.030 0.026 0.014 0.010 0.194 0.726 4 L 0.032 0.040 0.010 0.008 0.232 0.677 5 T 0.038 0.023 0.006 0.013 0.205 0.714 6 N 0.047 0.009 0.015 0.133 0.242 0.555 7 F 0.009 0.002 0.016 0.871 0.066 0.035 8 D 0.008 0.001 0.017 0.928 0.031 0.015 9 E 0.013 0.004 0.018 0.935 0.017 0.012 10 W 0.019 0.003 0.018 0.924 0.020 0.016 11 D 0.011 0.001 0.015 0.917 0.029 0.026 12 N 0.007 0.001 0.013 0.951 0.017 0.011 13 L 0.016 0.001 0.010 0.943 0.019 0.010 14 L 0.029 0.001 0.009 0.944 0.012 0.005 15 R 0.039 0.001 0.007 0.946 0.007 0.002 16 I 0.025 0.001 0.003 0.965 0.003 0.003 17 C 0.030 0.001 0.003 0.951 0.006 0.010 18 F 0.084 0.002 0.011 0.852 0.023 0.027 19 S 0.126 0.004 0.013 0.728 0.067 0.061 20 R 0.076 0.009 0.040 0.639 0.188 0.048 21 K 0.054 0.009 0.046 0.469 0.315 0.108 22 R 0.025 0.003 0.041 0.432 0.385 0.114 23 K 0.152 0.017 0.031 0.382 0.322 0.097 24 T 0.285 0.013 0.016 0.464 0.093 0.129 25 L 0.256 0.006 0.025 0.602 0.056 0.055 26 H 0.166 0.002 0.030 0.725 0.038 0.039 27 A 0.185 0.001 0.034 0.719 0.032 0.028 28 I 0.177 0.004 0.033 0.658 0.058 0.070 29 F 0.111 0.012 0.029 0.642 0.087 0.119 30 K 0.086 0.012 0.022 0.522 0.105 0.253 31 R 0.022 0.002 0.031 0.700 0.077 0.167 32 N 0.006 0.001 0.029 0.868 0.049 0.046 33 A 0.009 0.003 0.041 0.849 0.052 0.045 34 V 0.005 0.002 0.016 0.950 0.015 0.013 35 L 0.003 0.001 0.014 0.964 0.010 0.008 36 N 0.002 0.001 0.014 0.968 0.010 0.005 37 M 0.002 0.001 0.015 0.963 0.012 0.007 38 L 0.002 0.001 0.017 0.949 0.019 0.012 39 E 0.002 0.001 0.023 0.922 0.039 0.013 40 H 0.003 0.001 0.025 0.821 0.094 0.057 41 N 0.009 0.002 0.021 0.344 0.202 0.422 42 Y 0.044 0.007 0.029 0.566 0.161 0.192 43 K 0.223 0.007 0.035 0.418 0.145 0.172 44 N 0.357 0.012 0.045 0.398 0.081 0.105 45 W 0.268 0.010 0.070 0.514 0.056 0.083 46 C 0.189 0.004 0.087 0.480 0.098 0.141 47 T 0.169 0.008 0.104 0.362 0.167 0.190 48 L 0.134 0.029 0.056 0.331 0.192 0.256 49 N 0.091 0.016 0.043 0.256 0.275 0.319 50 K 0.079 0.007 0.024 0.035 0.268 0.588 51 Q 0.211 0.021 0.025 0.034 0.185 0.524 52 V 0.177 0.046 0.015 0.017 0.163 0.581 53 P 0.075 0.031 0.019 0.012 0.504 0.358 54 V 0.026 0.014 0.022 0.018 0.528 0.392 55 N 0.019 0.006 0.016 0.015 0.481 0.462 56 F 0.030 0.022 0.011 0.051 0.403 0.483 57 P 0.015 0.012 0.006 0.134 0.108 0.726 58 F 0.002 0.002 0.018 0.933 0.019 0.026 59 K 0.004 0.001 0.012 0.954 0.017 0.013 60 K 0.006 0.001 0.015 0.945 0.021 0.012 61 Y 0.010 0.001 0.013 0.945 0.015 0.015 62 C 0.004 0.001 0.005 0.980 0.005 0.005 63 L 0.001 0.001 0.003 0.989 0.003 0.003 64 D 0.001 0.001 0.003 0.992 0.002 0.002 65 V 0.001 0.001 0.003 0.990 0.003 0.003 66 L 0.001 0.001 0.006 0.978 0.008 0.007 67 E 0.001 0.001 0.008 0.962 0.016 0.013 68 H 0.001 0.001 0.012 0.880 0.047 0.060 69 L 0.001 0.001 0.013 0.672 0.099 0.214 70 D 0.002 0.003 0.021 0.257 0.188 0.528 71 M 0.002 0.003 0.075 0.697 0.127 0.097 72 C 0.005 0.002 0.079 0.742 0.106 0.066 73 E 0.005 0.002 0.082 0.781 0.090 0.040 74 K 0.009 0.003 0.096 0.738 0.102 0.052 75 R 0.010 0.004 0.107 0.702 0.102 0.075 76 S 0.013 0.004 0.163 0.579 0.154 0.087 77 I 0.018 0.004 0.111 0.505 0.175 0.188 78 N 0.027 0.010 0.045 0.143 0.191 0.584 79 L 0.021 0.031 0.005 0.055 0.143 0.746 80 D 0.008 0.005 0.001 0.020 0.040 0.925 81 E 0.001 0.001 0.020 0.974 0.002 0.003 82 N 0.001 0.001 0.018 0.979 0.002 0.001 83 D 0.001 0.001 0.012 0.987 0.001 0.001 84 F 0.001 0.001 0.002 0.997 0.001 0.001 85 L 0.001 0.001 0.001 0.999 0.001 0.001 86 K 0.001 0.001 0.001 0.998 0.001 0.001 87 L 0.001 0.001 0.001 0.996 0.002 0.001 88 L 0.001 0.001 0.003 0.994 0.002 0.001 89 L 0.001 0.001 0.009 0.986 0.003 0.001 90 E 0.001 0.001 0.013 0.977 0.007 0.003 91 F 0.001 0.001 0.015 0.937 0.016 0.030 92 N 0.002 0.003 0.030 0.719 0.114 0.132 93 K 0.004 0.003 0.058 0.617 0.230 0.088 94 K 0.007 0.001 0.033 0.578 0.267 0.113 95 G 0.066 0.005 0.028 0.107 0.435 0.359 96 I 0.368 0.016 0.010 0.030 0.141 0.435 97 H 0.768 0.027 0.004 0.018 0.052 0.130 98 F 0.622 0.017 0.002 0.009 0.072 0.279 99 F 0.222 0.008 0.003 0.006 0.133 0.629