# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq9A 285 1.96e-24 1i4wA 353 2.26e-01 c.66.1.24 66028 1dk0A 188 9.50e-01 1b2vA d.35.1.1 38530 1vb3A 428 1.79e+00 1yadA 221 1.85e+00 1p57B 255 1.95e+00 b.47.1.2 94126 2furA 209 2.30e+00 1a3aA 148 3.04e+00 1a3aA d.112.1.1 40917 1h8dH 260 3.41e+00 5ptp 1womA 271 4.13e+00 1mvwC 147 4.18e+00 i.15.1.1 79525 2fh5A 185 4.41e+00 1mqvA 125 5.26e+00 a.24.3.2 79415 1mwyA 73 5.33e+00 d.58.17.1 79616 1p35A 299 5.60e+00 1p35A b.28.1.1 23925 2jdxA 385 6.25e+00 1jdw d.126.1.2 41139 1avsA 90 6.55e+00 1cll a.39.1.5 17226 1zd3A 555 7.25e+00 1q0sA 259 7.28e+00 c.66.1.28 95509 1jdw 423 7.62e+00 1jdw d.126.1.2 41129 2bjcA 62 7.81e+00 2f2tA 161 8.08e+00 1wrvA 308 8.26e+00 2a0kA 161 8.40e+00 1kaeA 434 8.59e+00 c.82.1.2 72247 2ax3A 502 8.87e+00 1ngnA 155 9.48e+00 a.96.1.2 85697 1exrA 148 1.00e+01 1cll a.39.1.5 17299 1psrA 100 1.03e+01 1psrA a.39.1.2 17180 1vj5A 555 1.03e+01 c.108.1.2,c.69.1.11 100799,100800 1m65A 245 1.06e+01 c.6.3.1 84847 1fsgA 233 1.08e+01 1qk3A c.61.1.1 34029 1w7jB 151 1.09e+01 1dq3A 454 1.09e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2f62A 161 1.10e+01 1byrA 155 1.15e+01 1byrA d.136.1.1 41450 1i58A 189 1.18e+01 1b3qA d.122.1.3 61773 1yf3A 259 1.18e+01 1a7s 221 1.25e+01 1a7s b.47.1.2 26284 1mgtA 174 1.36e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1g2hA 61 1.49e+01 1g2hA a.4.1.12 60224 1qy1A 174 1.51e+01 b.60.1.1 96568 1tn4 159 1.59e+01 1ncx a.39.1.5 17248 1z8gA 372 1.59e+01 1wwiA 148 1.63e+01 1cpt 412 1.63e+01 1cpt a.104.1.1 18968 1hlvA 131 1.64e+01 a.4.1.7,a.4.1.7 65854,65855 1tvlA 454 1.65e+01 c.1.16.4 107366 1f0jA 377 1.67e+01 1f0jA a.211.1.2 19346 1vgyA 393 1.76e+01 c.56.5.4,d.58.19.1 100620,100621 1zndA 174 1.77e+01 1fs1B 141 1.80e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1b00A 127 1.84e+01 3chy c.23.1.1 31122 2b4rO 345 1.86e+01 1top 162 1.92e+01 1ncx a.39.1.5 17223 1mxmA 254 1.92e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1mijA 152 1.92e+01 a.4.1.1 79150 1cjgA 62 2.03e+01 1pru a.35.1.5 17112 2b9lA 394 2.10e+01 1a4pA 96 2.11e+01 1b4cA a.39.1.2 17176 1jv4A 162 2.14e+01 b.60.1.1 67343 1cyj 90 2.15e+01 1ctj a.3.1.1 15805 2astA 159 2.16e+01 1ctj 89 2.18e+01 1ctj a.3.1.1 15798 1nteA 82 2.33e+01 b.36.1.1 86163 1ispA 181 2.39e+01 c.69.1.18 76778 1r6jA 82 2.39e+01 b.36.1.1 97151 1jy5A 212 2.43e+01 d.124.1.1 71940 1jkmB 361 2.44e+01 1jkmA c.69.1.2 34634 1ym0A 238 2.46e+01 1vi0A 206 2.46e+01 a.4.1.9,a.121.1.1 100720,100721 1nxuA 333 2.52e+01 c.122.1.1 86389 1g6hA 257 2.56e+01 1gajA c.37.1.12 60318 1dp7P 76 2.56e+01 1dp7P a.4.5.20 16159 1wekA 217 2.58e+01 1pvgA 418 2.76e+01 d.14.1.3,d.122.1.2 95161,95162 1h0hB 214 2.87e+01 d.58.1.5 76437 1winA 143 2.88e+01 1i6wA 181 2.92e+01 1i6wA c.69.1.18 61859 1q7eA 428 2.93e+01 c.123.1.1 96035 1h8eD 482 2.93e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2bzgA 232 2.98e+01 2ch4A 320 3.06e+01 1vzqH 250 3.06e+01 2f06A 144 3.14e+01 1r5zA 323 3.14e+01 f.40.1.1 97135 1x3sA 195 3.16e+01 1g2bA 62 3.17e+01 1tud b.34.2.1 24488 1jalA 363 3.21e+01 c.37.1.8,d.15.10.2 84138,84139 1q1vA 70 3.47e+01 a.159.4.1 104479 1k20A 310 3.48e+01 c.107.1.1 68027 1ton 235 3.59e+01 5ptp b.47.1.2 26307 1i06A 180 3.63e+01 1mup b.60.1.1 27131 1v74A 107 3.65e+01 d.243.1.1 100442 1i05A 180 3.77e+01 1mup b.60.1.1 27130 1t64A 377 3.81e+01 c.42.1.2 106543 1gt6A 269 3.90e+01 c.69.1.17 76342 2cb2A 318 3.93e+01 1ygtA 111 3.99e+01 1wkbA 810 4.03e+01 1wpoA 256 4.04e+01 1lay b.57.1.1 27012 1q5dA 419 4.05e+01 a.104.1.1 95891 1q3iA 214 4.12e+01 d.220.1.1 104524 1sfe 180 4.15e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1eulA 994 4.18e+01 1eulA 1e79D 482 4.28e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1yemA 179 4.30e+01 1elvA 333 4.37e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1ecrA 309 4.42e+01 1ecrA e.2.1.1 42678 1yozA 116 4.51e+01 1e3oC 160 4.52e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 2sak 121 4.57e+01 2sak d.15.5.1 37711 1yqtA 538 4.58e+01 2trcP 217 4.61e+01 1b9yC c.47.1.6 33051 2occH 85 4.63e+01 2occH a.51.1.1 17796 2as9A 210 4.66e+01 1dcs 311 4.66e+01 1dcs b.82.2.1 28124 1j75A 67 4.80e+01 a.4.5.19 62673 1zk8A 183 4.83e+01 1wh8A 111 4.84e+01 1f5mA 180 4.87e+01 1f5mB d.110.2.1 40895 1alvA 173 4.89e+01 1alvA a.39.1.8 17370 1l1jA 239 4.93e+01 b.47.1.1 84516 1pvmA 184 4.97e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1hstA 90 4.99e+01 1hstA a.4.5.13 16140 1a0rP 245 5.06e+01 1b9yC c.47.1.6 33054 1a8y 367 5.08e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1vljA 407 5.16e+01 e.22.1.2 108832 1khyA 148 5.20e+01 a.174.1.1 77410 1z77A 200 5.24e+01 2c6yA 111 5.33e+01 1xizA 159 5.38e+01 1thg 544 5.45e+01 1thg c.69.1.17 34763 1z1zA 131 5.48e+01 1cjbA 231 5.51e+01 1qk3A c.61.1.1 34079 1wpgA 994 5.56e+01 1wz7A 111 5.58e+01 2fiqA 420 5.58e+01 1zjkA 403 5.59e+01 1y8oA 419 5.78e+01 1nmeA 146 5.81e+01 c.17.1.1 85874 1iioA 84 5.85e+01 a.39.4.1 66150 1t9kA 347 5.85e+01 c.124.1.5 106721 1fp1D 372 5.87e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1qy6A 274 5.88e+01 b.47.1.1 96574 1k8kG 151 5.95e+01 a.118.13.1 68313 1z15A 344 6.04e+01 1u04A 771 6.12e+01 b.34.14.1,c.55.3.10 107539,107540 1v9mA 323 6.25e+01 f.40.1.1 100543 1uuzA 137 6.43e+01 d.233.1.1 100024 2ilk 160 6.45e+01 2ilk a.26.1.3 16885 3sdhA 146 6.50e+01 3sdhA a.1.1.2 14984 1a41 234 6.52e+01 1a41 d.163.1.2 42174 1foeA 377 6.67e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1v54H 85 6.71e+01 a.51.1.1 100329 2fz4A 237 6.81e+01 1kzlA 208 6.84e+01 b.43.4.3,b.43.4.3 77635,77636 1v74B 87 6.90e+01 a.24.20.1 100443 1v9wA 130 6.93e+01 c.47.1.16 108453 2f3yA 148 6.94e+01 1vbuA 328 7.03e+01 1w7lA 422 7.07e+01 c.67.1.1 109226 1pt7A 437 7.07e+01 c.123.1.1 95093 1xx1A 285 7.17e+01 1vr1H 261 7.43e+01 5ptp 1mvoA 136 7.60e+01 c.23.1.1 79513 1mho 88 7.65e+01 1b4cA a.39.1.2 17171 1ggzA 148 7.66e+01 a.39.1.5 70176 1h6kA 757 7.76e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1opjA 293 7.78e+01 d.144.1.7 87230 2dexX 671 7.81e+01 1n8vA 112 7.81e+01 a.118.21.1 85457 2f1rA 171 7.92e+01 1tib 269 7.96e+01 3tgl c.69.1.17 34738 1dg9A 157 8.02e+01 1dg9A c.44.1.1 32637 1qqhA 144 8.08e+01 1dtoA b.91.1.1 28404 1cxqA 162 8.17e+01 1cxqA c.55.3.2 33621 2c07A 285 8.17e+01 1aocA 175 8.17e+01 1aocA g.17.1.5 44817 1bl0A 129 8.21e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1r89A 437 8.26e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1wdaA 670 8.28e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1fjlA 81 8.29e+01 2hddA a.4.1.1 16017 1hlrA 907 8.29e+01 1mvcA 240 8.32e+01 a.123.1.1 79499 1wy9A 147 8.33e+01 1mup 166 8.44e+01 1mup b.60.1.1 27133 1su4A 994 8.47e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 2g2cA 167 8.50e+01 1vlbA 907 8.52e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1ymqA 261 8.53e+01 1kwfA 363 8.76e+01 a.102.1.2 73078 1wmhB 86 8.80e+01 1bjnA 360 8.95e+01 1bjnA c.67.1.4 34469 1xpxA 163 9.00e+01