# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq9A 285 4.56e-26 2astA 159 7.48e-01 1nxuA 333 1.08e+00 c.122.1.1 86389 2f4lA 297 1.24e+00 1mvwC 147 1.32e+00 i.15.1.1 79525 1i58A 189 1.46e+00 1b3qA d.122.1.3 61773 1jmsA 381 1.68e+00 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1a3aA 148 1.74e+00 1a3aA d.112.1.1 40917 1vb3A 428 1.98e+00 1dk0A 188 1.98e+00 1b2vA d.35.1.1 38530 1w7jB 151 2.28e+00 1yadA 221 2.47e+00 1fs1B 141 3.19e+00 1vcbB a.157.1.1,d.42.1.1 19252,38664 1j8uA 325 3.68e+00 d.178.1.1 71611 1i4wA 353 3.90e+00 c.66.1.24 66028 1yf3A 259 4.85e+00 1xclA 235 5.64e+00 1hlvA 131 5.74e+00 a.4.1.7,a.4.1.7 65854,65855 4pah 308 6.18e+00 4pah d.178.1.1 42576 1q0rA 298 6.52e+00 c.69.1.28 95508 1ynuA 473 7.53e+00 1cnzA 363 8.01e+00 1cnzA c.77.1.1 35061 1dp3A 55 8.74e+00 1dp3A a.55.1.2 59128 2ax3A 502 8.99e+00 1cjgA 62 9.30e+00 1pru a.35.1.5 17112 1v97A 1332 9.38e+00 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1lvaA 258 9.41e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1zrn 232 1.01e+01 1qq5A c.108.1.1 43323 1m7yA 435 1.02e+01 c.67.1.4 78761 2fz4A 237 1.05e+01 1q0sA 259 1.12e+01 c.66.1.28 95509 1s5lA 344 1.14e+01 1b8gA 429 1.17e+01 1b8gA c.67.1.4 34499 1vljA 407 1.22e+01 e.22.1.2 108832 1vsd 152 1.26e+01 1cxqA c.55.3.2 33625 2f62A 161 1.31e+01 2a0kA 161 1.31e+01 2f2tA 161 1.31e+01 1w33A 181 1.31e+01 1a7s 221 1.32e+01 1a7s b.47.1.2 26284 1ujmA 342 1.36e+01 2ah5A 210 1.36e+01 2furA 209 1.36e+01 1y1pA 342 1.40e+01 1p35A 299 1.47e+01 1p35A b.28.1.1 23925 2g7gA 213 1.48e+01 2awpA 198 1.49e+01 1x3sA 195 1.50e+01 1ctj 89 1.63e+01 1ctj a.3.1.1 15798 2ethA 154 1.66e+01 1t4hA 290 1.72e+01 d.144.1.7 106420 1wwiA 148 1.73e+01 1wy1A 172 1.78e+01 1tffA 234 1.82e+01 d.3.1.11 106854 1p57B 255 1.85e+01 b.47.1.2 94126 1y82A 157 1.86e+01 1gcvB 136 1.86e+01 1cg5B a.1.1.2 15589 1mgtA 174 1.89e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 2bjcA 62 1.91e+01 1q5dA 419 1.92e+01 a.104.1.1 95891 1fcyA 236 1.93e+01 2lbd a.123.1.1 19282 2fm9A 215 1.94e+01 1ofdA 1520 1.95e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1fo4A 1332 2.02e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 2azqA 311 2.03e+01 1n9dA 199 2.06e+01 a.26.1.1 85464 1q8cA 151 2.11e+01 a.79.1.2 96202 1fiqC 763 2.12e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 2prd 174 2.13e+01 2prd b.40.5.1 25435 1v0dA 329 2.15e+01 d.4.1.7 108204 1p9bA 442 2.24e+01 c.37.1.10 94385 1q16C 225 2.35e+01 f.21.3.1 95549 1h8dH 260 2.35e+01 5ptp 2ch4A 320 2.51e+01 2ba2A 85 2.54e+01 1y5iC 225 2.55e+01 1cy5A 97 2.62e+01 1cy5A a.77.1.3 18430 1eljA 381 2.65e+01 4mbp c.94.1.1 35791 1kwfA 363 2.68e+01 a.102.1.2 73078 1mwyA 73 2.74e+01 d.58.17.1 79616 1o1zA 234 2.77e+01 c.1.18.3 86555 1x0vA 354 2.79e+01 1jy5A 212 2.81e+01 d.124.1.1 71940 1g8kA 825 2.87e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1br1B 150 2.91e+01 1wdcC a.39.1.5 17309 1p1cA 199 2.91e+01 c.66.1.16 87669 1ioj 57 3.10e+01 1ioj j.39.1.1 46293 1cxqA 162 3.23e+01 1cxqA c.55.3.2 33621 1oyjA 231 3.51e+01 a.45.1.1,c.47.1.5 87597,87598 1a4pA 96 3.55e+01 1b4cA a.39.1.2 17176 2gaiA 633 3.55e+01 1q5qA 259 3.56e+01 d.153.1.4 95904 1onqA 283 3.56e+01 b.1.1.2,d.19.1.1 93365,93366 1ni4B 341 3.62e+01 c.36.1.7,c.48.1.2 85729,85730 1abv 134 3.73e+01 1abv a.70.1.1 18317 1ockA 412 3.75e+01 c.117.1.1 86802 1pvmA 184 3.75e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1mym 154 3.79e+01 1a6m a.1.1.2 15054 1zcoA 262 3.86e+01 1dcs 311 3.86e+01 1dcs b.82.2.1 28124 1h8eD 482 3.89e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1y1xA 191 3.92e+01 1tvlA 454 4.05e+01 c.1.16.4 107366 1fnnA 389 4.11e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1mll 154 4.14e+01 1a6m a.1.1.2 15057 1wbpA 397 4.14e+01 1mlwA 301 4.17e+01 d.178.1.1 79289 2btoA 473 4.28e+01 2ew2A 316 4.33e+01 1jalA 363 4.35e+01 c.37.1.8,d.15.10.2 84138,84139 1scuA 288 4.37e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 1mbxC 106 4.57e+01 d.45.1.2 78929 1j6pA 418 4.57e+01 b.92.1.4,c.1.9.9 77089,77090 1qcwA 410 4.64e+01 1gox c.1.4.1 28622 1m65A 245 4.67e+01 c.6.3.1 84847 1p1mA 406 4.67e+01 b.92.1.4,c.1.9.9 87696,87697 1eo1A 124 4.71e+01 1eo1A c.55.5.1 33739 1riqA 465 4.79e+01 a.203.1.1,d.104.1.1 97516,97517 1vl5A 260 4.82e+01 c.66.1.41 108720 1sglA 209 4.87e+01 d.124.1.1 105536 1r6oC 106 4.96e+01 1ddgA 374 4.97e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1ton 235 4.98e+01 5ptp b.47.1.2 26307 1cem 363 5.04e+01 1cem a.102.1.2 18826 103m 154 5.04e+01 1a6m a.1.1.2 15124 2mgb 154 5.05e+01 1a6m a.1.1.2 15102 2c43A 323 5.11e+01 1mod 154 5.12e+01 1a6m a.1.1.2 15107 2oatA 439 5.14e+01 2dkb c.67.1.4 34452 1oatA 439 5.16e+01 2dkb c.67.1.4 34461 1xqoA 256 5.16e+01 1y96B 85 5.18e+01 2bylA 439 5.18e+01 1yarA 233 5.26e+01 1q0vA 81 5.27e+01 j.105.1.1 95514 1pv5A 264 5.27e+01 d.251.1.1 95150 1t3cA 421 5.30e+01 d.92.1.7 106343 1top 162 5.34e+01 1ncx a.39.1.5 17223 2byjA 439 5.42e+01 1ooeA 236 5.49e+01 c.2.1.2 87196 2spl 154 5.57e+01 1a6m a.1.1.2 15047 1mqvA 125 5.58e+01 a.24.3.2 79415 1v4aA 440 5.83e+01 a.24.16.4,d.218.1.9 108350,108351 2gfnA 209 5.88e+01 1lj9A 144 5.96e+01 a.4.5.28 78035 1zlqA 502 6.12e+01 2bjfA 329 6.13e+01 1ky3A 182 6.13e+01 c.37.1.8 73193 1xiuA 230 6.24e+01 1vi0A 206 6.45e+01 a.4.1.9,a.121.1.1 100720,100721 1zthA 258 6.46e+01 1bzpA 153 6.56e+01 1a6m a.1.1.2 15020 1w36B 1180 6.58e+01 1mijA 152 6.65e+01 a.4.1.1 79150 1c7qA 445 6.71e+01 2pgi c.80.1.2 35307 1ihgA 370 6.83e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 2cwyA 94 6.84e+01 1bob 320 6.84e+01 1bob d.108.1.1 40816 1o63A 219 6.93e+01 c.94.1.1 92540 1v96A 149 7.09e+01 1z7mA 344 7.17e+01 1zq7A 207 7.18e+01 1o1xA 155 7.19e+01 c.121.1.1 86553 1bn7A 294 7.20e+01 1bn6A c.69.1.8 34677 2d2mA 140 7.23e+01 1uiuA 502 7.34e+01 c.94.1.1 99434 1yfsA 465 7.34e+01 1npoA 95 7.40e+01 1npoA b.9.1.1 23270 1oz9A 150 7.40e+01 d.92.1.15 93808 1qyrA 252 7.45e+01 c.66.1.24 104657 2mgg 154 7.53e+01 1a6m a.1.1.2 15069 1byrA 155 7.54e+01 1byrA d.136.1.1 41450 1q7eA 428 7.66e+01 c.123.1.1 96035 2rslA 140 7.67e+01 2rslA c.53.1.1 33345 1x31D 99 7.75e+01 1ji7A 89 8.07e+01 a.60.1.1 71682 2d2mC 147 8.08e+01 1cyj 90 8.09e+01 1ctj a.3.1.1 15805 1iugA 352 8.11e+01 c.67.1.3 90699 1fp1D 372 8.34e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1j1hA 144 8.36e+01 b.111.1.1 77056 1l7vA 326 8.38e+01 f.22.1.1 73672 1paqA 189 8.40e+01 a.118.1.14 94413 1jb9A 316 8.47e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1ojrA 274 8.48e+01 c.74.1.1 93147 1a6m 151 8.54e+01 1a6m a.1.1.2 15018 2a5vA 213 8.55e+01 2cw6A 298 8.78e+01 2c07A 285 8.89e+01 2fe8A 315 8.96e+01 1oxjA 173 8.98e+01 a.60.1.2,a.118.1.13 87517,87518