# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq9A 285 1.02e-18 1dk0A 188 1.32e+00 1b2vA d.35.1.1 38530 2bzgA 232 2.25e+00 1hlvA 131 2.56e+00 a.4.1.7,a.4.1.7 65854,65855 1a8y 367 3.39e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1h8dH 260 4.08e+00 5ptp 1mvwC 147 4.71e+00 i.15.1.1 79525 2astA 159 4.95e+00 1fs1B 141 5.04e+00 1vcbB a.157.1.1,d.42.1.1 19252,38664 1p35A 299 5.11e+00 1p35A b.28.1.1 23925 2bjcA 62 5.55e+00 1w7jB 151 5.92e+00 1i4wA 353 6.71e+00 c.66.1.24 66028 1qgrA 876 9.53e+00 1qgrA a.118.1.1 19119 1cjgA 62 1.02e+01 1pru a.35.1.5 17112 1tn4 159 1.10e+01 1ncx a.39.1.5 17248 1x31D 99 1.17e+01 1a7s 221 1.26e+01 1a7s b.47.1.2 26284 1pt7A 437 1.48e+01 c.123.1.1 95093 1i58A 189 1.66e+01 1b3qA d.122.1.3 61773 1ctj 89 1.67e+01 1ctj a.3.1.1 15798 1q7eA 428 1.69e+01 c.123.1.1 96035 1vb3A 428 1.72e+01 1h0hB 214 1.77e+01 d.58.1.5 76437 1p57B 255 1.84e+01 b.47.1.2 94126 2fh5A 185 1.88e+01 1psrA 100 1.97e+01 1psrA a.39.1.2 17180 2furA 209 2.10e+01 1jj2K 164 2.11e+01 1ffkJ c.12.1.1 63096 1s72L 165 2.16e+01 c.12.1.1 105331 1yf3A 259 2.26e+01 1dmhA 311 2.32e+01 1dmhA b.3.6.1 22633 1a3aA 148 2.33e+01 1a3aA d.112.1.1 40917 1sglA 209 2.35e+01 d.124.1.1 105536 1jy5A 212 2.37e+01 d.124.1.1 71940 1k0hA 117 2.46e+01 b.106.1.2 71975 1g2hA 61 2.46e+01 1g2hA a.4.1.12 60224 1xsnA 335 2.48e+01 1jmsA 381 2.52e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1mwyA 73 2.58e+01 d.58.17.1 79616 2occH 85 2.62e+01 2occH a.51.1.1 17796 1z1zA 131 2.70e+01 1vqoL 165 2.75e+01 1zd3A 555 2.76e+01 2ch4A 320 2.77e+01 1avsA 90 2.77e+01 1cll a.39.1.5 17226 1v54H 85 2.78e+01 a.51.1.1 100329 1q5dA 419 2.88e+01 a.104.1.1 95891 1q0sA 259 2.91e+01 c.66.1.28 95509 1nteA 82 2.96e+01 b.36.1.1 86163 1womA 271 3.03e+01 1kaeA 434 3.05e+01 c.82.1.2 72247 1vgyA 393 3.06e+01 c.56.5.4,d.58.19.1 100620,100621 1m65A 245 3.25e+01 c.6.3.1 84847 2bcqA 335 3.35e+01 1r6jA 82 3.45e+01 b.36.1.1 97151 1g2bA 62 3.46e+01 1tud b.34.2.1 24488 1snlA 103 3.47e+01 a.39.1.7 105820 2sak 121 3.50e+01 2sak d.15.5.1 37711 1s9aA 257 3.54e+01 b.3.6.1 105379 1dq3A 454 3.62e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1vj5A 555 3.63e+01 c.108.1.2,c.69.1.11 100799,100800 1yqtA 538 3.69e+01 1mxmA 254 3.78e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1exrA 148 3.88e+01 1cll a.39.1.5 17299 2ba2A 85 4.11e+01 1zrn 232 4.18e+01 1qq5A c.108.1.1 43323 1onqA 283 4.20e+01 b.1.1.2,d.19.1.1 93365,93366 1uiuA 502 4.45e+01 c.94.1.1 99434 1wekA 217 4.50e+01 2f3yA 148 4.59e+01 1mqvA 125 4.64e+01 a.24.3.2 79415 1cpt 412 4.66e+01 1cpt a.104.1.1 18968 1ls9A 91 4.68e+01 a.3.1.1 78177 1avoA 60 4.71e+01 1avoA a.24.8.1 16619 1oqeK 31 4.73e+01 g.24.1.2 87296 1n8vA 112 4.74e+01 a.118.21.1 85457 2as9A 210 4.91e+01 1elvA 333 4.99e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1cyj 90 5.03e+01 1ctj a.3.1.1 15805 1z77A 200 5.23e+01 1x3sA 195 5.23e+01 1br1B 150 5.35e+01 1wdcC a.39.1.5 17309 1p5hA 428 5.56e+01 c.123.1.1 87802 1y0vH 146 5.59e+01 1vp2A 208 5.66e+01 1a64A 97 5.66e+01 1cdcA b.1.1.1 19750 2ax3A 502 5.71e+01 1g6hA 257 5.82e+01 1gajA c.37.1.12 60318 1zcdA 388 6.13e+01 1z7mA 344 6.27e+01 1rztA 331 6.34e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1mijA 152 6.48e+01 a.4.1.1 79150 1ecmA 109 6.89e+01 1ecmA a.130.1.1 19492 1vzqH 250 7.04e+01 1n9dA 199 7.11e+01 a.26.1.1 85464 1nkr 201 7.14e+01 1nkr b.1.1.4,b.1.1.4 21799,21800 2ahyA 110 7.20e+01 1xx1A 285 7.20e+01 1e3oC 160 7.36e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1mo7A 213 7.37e+01 d.220.1.1 85028 1yemA 179 7.38e+01 1jk7A 323 7.41e+01 1auiA d.159.1.3 63144 1f1zA 273 7.49e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 1g2cB 43 7.65e+01 1g2cB 1l1jA 239 8.06e+01 b.47.1.1 84516 1cy5A 97 8.26e+01 1cy5A a.77.1.3 18430 1zk8A 183 8.35e+01 2cruA 118 8.36e+01 1u32A 293 8.39e+01 d.159.1.3 107631 1hstA 90 8.41e+01 1hstA a.4.5.13 16140 1zjkA 403 8.49e+01 1tr8A 102 8.50e+01 1g4yR 148 8.92e+01 1cll a.39.1.5 60252