/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0293.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0293.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0293/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h00A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175076422 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.8861 sec, elapsed time= 5.98598 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.96509 sec, elapsed time= 6.08815 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0293 numbered 1 through 250 Created new target T0293 from T0293.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h00A expands to /projects/compbio/data/pdb/2h00.pdb.gz 2h00A:Skipped atom 1398, because occupancy 5.0000000e-01 <= existing 0.500 in 2h00A Skipped atom 1400, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1402, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1404, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1408, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1412, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1414, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 2h00A Skipped atom 1418, because occupancy 0.500 <= existing 0.500 in 2h00A Read 225 residues and 1801 atoms. # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.28774 sec, elapsed time= 8.49076 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 244 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -41.4414 # GDT_score(maxd=8,maxw=2.9)= -42.4224 # GDT_score(maxd=8,maxw=3.2)= -40.0262 # GDT_score(maxd=8,maxw=3.5)= -37.8145 # GDT_score(maxd=10,maxw=3.8)= -40.8802 # GDT_score(maxd=10,maxw=4)= -39.4452 # GDT_score(maxd=10,maxw=4.2)= -38.0991 # GDT_score(maxd=12,maxw=4.3)= -41.5089 # GDT_score(maxd=12,maxw=4.5)= -40.1549 # GDT_score(maxd=12,maxw=4.7)= -38.8604 # GDT_score(maxd=14,maxw=5.2)= -39.0106 # GDT_score(maxd=14,maxw=5.5)= -37.2362 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2670.000 rmsd (weighted)= 13.878 (unweighted)= 31.505 superimposing iter= 1 total_weight= 6386.215 rmsd (weighted)= 6.189 (unweighted)= 30.347 superimposing iter= 2 total_weight= 4011.506 rmsd (weighted)= 3.763 (unweighted)= 30.209 superimposing iter= 3 total_weight= 3118.550 rmsd (weighted)= 2.697 (unweighted)= 30.192 superimposing iter= 4 total_weight= 2780.814 rmsd (weighted)= 2.083 (unweighted)= 30.192 superimposing iter= 5 total_weight= 2335.707 rmsd (weighted)= 1.779 (unweighted)= 30.194 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_999464468.pdb -s /var/tmp/to_scwrl_999464468.seq -o /var/tmp/from_scwrl_999464468.pdb > /var/tmp/scwrl_999464468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999464468.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -43.3559 # GDT_score(maxd=8,maxw=2.9)= -43.9746 # GDT_score(maxd=8,maxw=3.2)= -41.444 # GDT_score(maxd=8,maxw=3.5)= -39.1099 # GDT_score(maxd=10,maxw=3.8)= -42.1113 # GDT_score(maxd=10,maxw=4)= -40.6401 # GDT_score(maxd=10,maxw=4.2)= -39.2114 # GDT_score(maxd=12,maxw=4.3)= -42.6554 # GDT_score(maxd=12,maxw=4.5)= -41.225 # GDT_score(maxd=12,maxw=4.7)= -39.8883 # GDT_score(maxd=14,maxw=5.2)= -39.9232 # GDT_score(maxd=14,maxw=5.5)= -38.1134 # command:# request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_508084023.pdb -s /var/tmp/to_scwrl_508084023.seq -o /var/tmp/from_scwrl_508084023.pdb > /var/tmp/scwrl_508084023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508084023.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -42.7928 # GDT_score(maxd=8,maxw=2.9)= -43.2473 # GDT_score(maxd=8,maxw=3.2)= -40.7499 # GDT_score(maxd=8,maxw=3.5)= -38.4522 # GDT_score(maxd=10,maxw=3.8)= -41.5527 # GDT_score(maxd=10,maxw=4)= -40.0508 # GDT_score(maxd=10,maxw=4.2)= -38.6454 # GDT_score(maxd=12,maxw=4.3)= -42.102 # GDT_score(maxd=12,maxw=4.5)= -40.6941 # GDT_score(maxd=12,maxw=4.7)= -39.3448 # GDT_score(maxd=14,maxw=5.2)= -39.4274 # GDT_score(maxd=14,maxw=5.5)= -37.6278 # command:# request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2056126435.pdb -s /var/tmp/to_scwrl_2056126435.seq -o /var/tmp/from_scwrl_2056126435.pdb > /var/tmp/scwrl_2056126435.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056126435.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -41.8919 # GDT_score(maxd=8,maxw=2.9)= -42.2829 # GDT_score(maxd=8,maxw=3.2)= -39.8424 # GDT_score(maxd=8,maxw=3.5)= -37.5948 # GDT_score(maxd=10,maxw=3.8)= -40.7792 # GDT_score(maxd=10,maxw=4)= -39.34 # GDT_score(maxd=10,maxw=4.2)= -37.9962 # GDT_score(maxd=12,maxw=4.3)= -41.508 # GDT_score(maxd=12,maxw=4.5)= -40.1464 # GDT_score(maxd=12,maxw=4.7)= -38.8347 # GDT_score(maxd=14,maxw=5.2)= -39.014 # GDT_score(maxd=14,maxw=5.5)= -37.2516 # command:# request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_500845652.pdb -s /var/tmp/to_scwrl_500845652.seq -o /var/tmp/from_scwrl_500845652.pdb > /var/tmp/scwrl_500845652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_500845652.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.72973 # GDT_score = -40.3153 # GDT_score(maxd=8,maxw=2.9)= -39.9717 # GDT_score(maxd=8,maxw=3.2)= -37.9631 # GDT_score(maxd=8,maxw=3.5)= -35.8898 # GDT_score(maxd=10,maxw=3.8)= -38.6818 # GDT_score(maxd=10,maxw=4)= -37.3143 # GDT_score(maxd=10,maxw=4.2)= -36.0013 # GDT_score(maxd=12,maxw=4.3)= -39.1555 # GDT_score(maxd=12,maxw=4.5)= -37.8348 # GDT_score(maxd=12,maxw=4.7)= -36.5507 # GDT_score(maxd=14,maxw=5.2)= -36.4929 # GDT_score(maxd=14,maxw=5.5)= -34.8427 # command:# request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1787945087.pdb -s /var/tmp/to_scwrl_1787945087.seq -o /var/tmp/from_scwrl_1787945087.pdb > /var/tmp/scwrl_1787945087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787945087.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0293.try1-opt2.pdb looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -29.3919 # GDT_score(maxd=8,maxw=2.9)= -29.7671 # GDT_score(maxd=8,maxw=3.2)= -28.4224 # GDT_score(maxd=8,maxw=3.5)= -27.1366 # GDT_score(maxd=10,maxw=3.8)= -28.835 # GDT_score(maxd=10,maxw=4)= -27.9931 # GDT_score(maxd=10,maxw=4.2)= -27.1915 # GDT_score(maxd=12,maxw=4.3)= -29.3191 # GDT_score(maxd=12,maxw=4.5)= -28.5045 # GDT_score(maxd=12,maxw=4.7)= -27.6862 # GDT_score(maxd=14,maxw=5.2)= -27.9494 # GDT_score(maxd=14,maxw=5.5)= -26.7881 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2670.000 rmsd (weighted)= 19.456 (unweighted)= 35.577 superimposing iter= 1 total_weight= 5244.945 rmsd (weighted)= 10.798 (unweighted)= 36.284 superimposing iter= 2 total_weight= 2588.710 rmsd (weighted)= 8.707 (unweighted)= 36.636 superimposing iter= 3 total_weight= 2138.178 rmsd (weighted)= 7.747 (unweighted)= 36.893 superimposing iter= 4 total_weight= 2066.010 rmsd (weighted)= 7.007 (unweighted)= 37.107 superimposing iter= 5 total_weight= 2054.253 rmsd (weighted)= 6.347 (unweighted)= 37.279 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0293.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0293)P36.C and (T0293)L40.C only 0.000 apart, marking (T0293)L40.C as missing WARNING: atoms too close: (T0293)T37.N and (T0293)R41.N only 0.000 apart, marking (T0293)T37.N as missing WARNING: atoms too close: (T0293)T37.CA and (T0293)R41.CA only 0.000 apart, marking (T0293)T37.CA as missing WARNING: atoms too close: (T0293)I52.C and (T0293)H54.C only 0.000 apart, marking (T0293)H54.C as missing WARNING: atoms too close: (T0293)G53.N and (T0293)Q55.N only 0.000 apart, marking (T0293)G53.N as missing WARNING: atoms too close: (T0293)G53.CA and (T0293)Q55.CA only 0.000 apart, marking (T0293)G53.CA as missing WARNING: atoms too close: (T0293)L83.C and (T0293)N84.C only 0.000 apart, marking (T0293)N84.C as missing WARNING: atoms too close: (T0293)N84.N and (T0293)G85.N only 0.000 apart, marking (T0293)N84.N as missing WARNING: atoms too close: (T0293)N84.CA and (T0293)G85.CA only 0.000 apart, marking (T0293)N84.CA as missing WARNING: atoms too close: (T0293)L124.C and (T0293)A128.C only 0.000 apart, marking (T0293)A128.C as missing WARNING: atoms too close: (T0293)L125.N and (T0293)L129.N only 0.000 apart, marking (T0293)L125.N as missing WARNING: atoms too close: (T0293)L125.CA and (T0293)L129.CA only 0.000 apart, marking (T0293)L125.CA as missing WARNING: atoms too close: (T0293)E134.C and (T0293)I135.C only 0.000 apart, marking (T0293)I135.C as missing WARNING: atoms too close: (T0293)I135.N and (T0293)I136.N only 0.000 apart, marking (T0293)I135.N as missing WARNING: atoms too close: (T0293)I135.CA and (T0293)I136.CA only 0.000 apart, marking (T0293)I135.CA as missing WARNING: atoms too close: (T0293)Q150.C and (T0293)R162.C only 0.000 apart, marking (T0293)R162.C as missing WARNING: atoms too close: (T0293)L151.N and (T0293)R163.N only 0.000 apart, marking (T0293)L151.N as missing WARNING: atoms too close: (T0293)L151.CA and (T0293)R163.CA only 0.000 apart, marking (T0293)L151.CA as missing WARNING: atoms too close: (T0293)D193.C and (T0293)L197.C only 0.000 apart, marking (T0293)L197.C as missing WARNING: atoms too close: (T0293)S194.N and (T0293)G198.N only 0.000 apart, marking (T0293)S194.N as missing WARNING: atoms too close: (T0293)S194.CA and (T0293)G198.CA only 0.000 apart, marking (T0293)S194.CA as missing WARNING: atoms too close: (T0293)K218.C and (T0293)I223.C only 0.000 apart, marking (T0293)I223.C as missing WARNING: atoms too close: (T0293)E219.N and (T0293)Q224.N only 0.000 apart, marking (T0293)E219.N as missing WARNING: atoms too close: (T0293)E219.CA and (T0293)Q224.CA only 0.000 apart, marking (T0293)E219.CA as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.783784 # GDT_score = -43.2432 # GDT_score(maxd=8,maxw=2.9)= -42.751 # GDT_score(maxd=8,maxw=3.2)= -40.6189 # GDT_score(maxd=8,maxw=3.5)= -38.4096 # GDT_score(maxd=10,maxw=3.8)= -41.4013 # GDT_score(maxd=10,maxw=4)= -39.9362 # GDT_score(maxd=10,maxw=4.2)= -38.5004 # GDT_score(maxd=12,maxw=4.3)= -41.8982 # GDT_score(maxd=12,maxw=4.5)= -40.4585 # GDT_score(maxd=12,maxw=4.7)= -39.0713 # GDT_score(maxd=14,maxw=5.2)= -39.0072 # GDT_score(maxd=14,maxw=5.5)= -37.2199 # command:# ReadConformPDB reading from PDB file T0293.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0293)L31.C and (T0293)P36.C only 0.000 apart, marking (T0293)P36.C as missing WARNING: atoms too close: (T0293)E32.N and (T0293)T37.N only 0.000 apart, marking (T0293)E32.N as missing WARNING: atoms too close: (T0293)E32.CA and (T0293)T37.CA only 0.000 apart, marking (T0293)E32.CA as missing WARNING: atoms too close: (T0293)I52.C and (T0293)H54.C only 0.000 apart, marking (T0293)H54.C as missing WARNING: atoms too close: (T0293)G53.N and (T0293)Q55.N only 0.000 apart, marking (T0293)G53.N as missing WARNING: atoms too close: (T0293)G53.CA and (T0293)Q55.CA only 0.000 apart, marking (T0293)G53.CA as missing WARNING: atoms too close: (T0293)N84.C and (T0293)W86.C only 0.000 apart, marking (T0293)W86.C as missing WARNING: atoms too close: (T0293)G85.N and (T0293)Y87.N only 0.000 apart, marking (T0293)G85.N as missing WARNING: atoms too close: (T0293)G85.CA and (T0293)Y87.CA only 0.000 apart, marking (T0293)G85.CA as missing WARNING: atoms too close: (T0293)P120.C and (T0293)L124.C only 0.000 apart, marking (T0293)L124.C as missing WARNING: atoms too close: (T0293)Q121.N and (T0293)L125.N only 0.000 apart, marking (T0293)Q121.N as missing WARNING: atoms too close: (T0293)Q121.CA and (T0293)L125.CA only 0.000 apart, marking (T0293)Q121.CA as missing WARNING: atoms too close: (T0293)M126.C and (T0293)L129.C only 0.000 apart, marking (T0293)L129.C as missing WARNING: atoms too close: (T0293)D127.N and (T0293)K130.N only 0.000 apart, marking (T0293)D127.N as missing WARNING: atoms too close: (T0293)D127.CA and (T0293)K130.CA only 0.000 apart, marking (T0293)D127.CA as missing WARNING: atoms too close: (T0293)P145.C and (T0293)F146.C only 0.000 apart, marking (T0293)F146.C as missing WARNING: atoms too close: (T0293)F146.N and (T0293)F147.N only 0.000 apart, marking (T0293)F146.N as missing WARNING: atoms too close: (T0293)F146.CA and (T0293)F147.CA only 0.000 apart, marking (T0293)F146.CA as missing WARNING: atoms too close: (T0293)A148.C and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)N149.N and (T0293)G181.N only 0.000 apart, marking (T0293)N149.N as missing WARNING: atoms too close: (T0293)N149.CA and (T0293)G181.CA only 0.000 apart, marking (T0293)N149.CA as missing WARNING: atoms too close: (T0293)G182.C and (T0293)E183.C only 0.000 apart, marking (T0293)E183.C as missing WARNING: atoms too close: (T0293)E183.N and (T0293)L184.N only 0.000 apart, marking (T0293)E183.N as missing WARNING: atoms too close: (T0293)E183.CA and (T0293)L184.CA only 0.000 apart, marking (T0293)E183.CA as missing WARNING: atoms too close: (T0293)Q224.C and (T0293)G225.C only 0.000 apart, marking (T0293)G225.C as missing WARNING: atoms too close: (T0293)G225.N and (T0293)V226.N only 0.000 apart, marking (T0293)G225.N as missing WARNING: atoms too close: (T0293)G225.CA and (T0293)V226.CA only 0.000 apart, marking (T0293)G225.CA as missing WARNING: atoms too close: (T0293)G237.C and (T0293)M240.C only 0.000 apart, marking (T0293)M240.C as missing WARNING: atoms too close: (T0293)R238.N and (T0293)R241.N only 0.000 apart, marking (T0293)R238.N as missing WARNING: atoms too close: (T0293)R238.CA and (T0293)R241.CA only 0.000 apart, marking (T0293)R238.CA as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.792793 # GDT_score = -44.3694 # GDT_score(maxd=8,maxw=2.9)= -44.9481 # GDT_score(maxd=8,maxw=3.2)= -42.6677 # GDT_score(maxd=8,maxw=3.5)= -40.3645 # GDT_score(maxd=10,maxw=3.8)= -42.9333 # GDT_score(maxd=10,maxw=4)= -41.4249 # GDT_score(maxd=10,maxw=4.2)= -39.9963 # GDT_score(maxd=12,maxw=4.3)= -43.1581 # GDT_score(maxd=12,maxw=4.5)= -41.7402 # GDT_score(maxd=12,maxw=4.7)= -40.3687 # GDT_score(maxd=14,maxw=5.2)= -40.2337 # GDT_score(maxd=14,maxw=5.5)= -38.3794 # command:# ReadConformPDB reading from PDB file T0293.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0293)L83.C and (T0293)N84.C only 0.000 apart, marking (T0293)N84.C as missing WARNING: atoms too close: (T0293)N84.N and (T0293)G85.N only 0.000 apart, marking (T0293)N84.N as missing WARNING: atoms too close: (T0293)N84.CA and (T0293)G85.CA only 0.000 apart, marking (T0293)N84.CA as missing WARNING: atoms too close: (T0293)D112.C and (T0293)L113.C only 0.000 apart, marking (T0293)L113.C as missing WARNING: atoms too close: (T0293)L113.N and (T0293)I114.N only 0.000 apart, marking (T0293)L113.N as missing WARNING: atoms too close: (T0293)L113.CA and (T0293)I114.CA only 0.000 apart, marking (T0293)L113.CA as missing WARNING: atoms too close: (T0293)D127.C and (T0293)S133.C only 0.000 apart, marking (T0293)S133.C as missing WARNING: atoms too close: (T0293)A128.N and (T0293)E134.N only 0.000 apart, marking (T0293)A128.N as missing WARNING: atoms too close: (T0293)A128.CA and (T0293)E134.CA only 0.000 apart, marking (T0293)A128.CA as missing WARNING: atoms too close: (T0293)C142.C and (T0293)N157.C only 0.000 apart, marking (T0293)N157.C as missing WARNING: atoms too close: (T0293)N143.N and (T0293)S158.N only 0.000 apart, marking (T0293)N143.N as missing WARNING: atoms too close: (T0293)N143.CA and (T0293)S158.CA only 0.000 apart, marking (T0293)N143.CA as missing WARNING: atoms too close: (T0293)S167.C and (T0293)G173.C only 0.000 apart, marking (T0293)G173.C as missing WARNING: atoms too close: (T0293)S168.N and (T0293)I174.N only 0.000 apart, marking (T0293)S168.N as missing WARNING: atoms too close: (T0293)S168.CA and (T0293)I174.CA only 0.000 apart, marking (T0293)S168.CA as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0293.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0293)G53.C and (T0293)D58.C only 0.000 apart, marking (T0293)D58.C as missing WARNING: atoms too close: (T0293)H54.N and (T0293)K59.N only 0.000 apart, marking (T0293)H54.N as missing WARNING: atoms too close: (T0293)H54.CA and (T0293)K59.CA only 0.000 apart, marking (T0293)H54.CA as missing WARNING: atoms too close: (T0293)L124.C and (T0293)L125.C only 0.000 apart, marking (T0293)L125.C as missing WARNING: atoms too close: (T0293)L125.N and (T0293)M126.N only 0.000 apart, marking (T0293)L125.N as missing WARNING: atoms too close: (T0293)L125.CA and (T0293)M126.CA only 0.000 apart, marking (T0293)L125.CA as missing WARNING: atoms too close: (T0293)D127.C and (T0293)S133.C only 0.000 apart, marking (T0293)S133.C as missing WARNING: atoms too close: (T0293)A128.N and (T0293)E134.N only 0.000 apart, marking (T0293)A128.N as missing WARNING: atoms too close: (T0293)A128.CA and (T0293)E134.CA only 0.000 apart, marking (T0293)A128.CA as missing WARNING: atoms too close: (T0293)C142.C and (T0293)R162.C only 0.000 apart, marking (T0293)R162.C as missing WARNING: atoms too close: (T0293)N143.N and (T0293)R163.N only 0.000 apart, marking (T0293)N143.N as missing WARNING: atoms too close: (T0293)N143.CA and (T0293)R163.CA only 0.000 apart, marking (T0293)N143.CA as missing WARNING: atoms too close: (T0293)S194.C and (T0293)L214.C only 0.000 apart, marking (T0293)L214.C as missing WARNING: atoms too close: (T0293)L195.N and (T0293)A215.N only 0.000 apart, marking (T0293)L195.N as missing WARNING: atoms too close: (T0293)L195.CA and (T0293)A215.CA only 0.000 apart, marking (T0293)L195.CA as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0293.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0293)D112.C and (T0293)L113.C only 0.000 apart, marking (T0293)L113.C as missing WARNING: atoms too close: (T0293)L113.N and (T0293)I114.N only 0.000 apart, marking (T0293)L113.N as missing WARNING: atoms too close: (T0293)L113.CA and (T0293)I114.CA only 0.000 apart, marking (T0293)L113.CA as missing WARNING: atoms too close: (T0293)D127.C and (T0293)S133.C only 0.000 apart, marking (T0293)S133.C as missing WARNING: atoms too close: (T0293)A128.N and (T0293)E134.N only 0.000 apart, marking (T0293)A128.N as missing WARNING: atoms too close: (T0293)A128.CA and (T0293)E134.CA only 0.000 apart, marking (T0293)A128.CA as missing WARNING: atoms too close: (T0293)C142.C and (T0293)N157.C only 0.000 apart, marking (T0293)N157.C as missing WARNING: atoms too close: (T0293)N143.N and (T0293)S158.N only 0.000 apart, marking (T0293)N143.N as missing WARNING: atoms too close: (T0293)N143.CA and (T0293)S158.CA only 0.000 apart, marking (T0293)N143.CA as missing WARNING: atoms too close: (T0293)P165.C and (T0293)T171.C only 0.000 apart, marking (T0293)T171.C as missing WARNING: atoms too close: (T0293)P166.N and (T0293)G172.N only 0.000 apart, marking (T0293)P166.N as missing WARNING: atoms too close: (T0293)P166.CA and (T0293)G172.CA only 0.000 apart, marking (T0293)P166.CA as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0293.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0293.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-align2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-server.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry4.proto.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file lineup230and245take1.2rotateNterminusAndMove.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file lineup230and245take1.9rotateNtermSlide33-37helix.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1.1FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1.2FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1.2andMoveH33-37.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over2FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_792291696.pdb -s /var/tmp/to_scwrl_792291696.seq -o /var/tmp/from_scwrl_792291696.pdb > /var/tmp/scwrl_792291696.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_792291696.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1085909202.pdb -s /var/tmp/to_scwrl_1085909202.seq -o /var/tmp/from_scwrl_1085909202.pdb > /var/tmp/scwrl_1085909202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1085909202.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_962417495.pdb -s /var/tmp/to_scwrl_962417495.seq -o /var/tmp/from_scwrl_962417495.pdb > /var/tmp/scwrl_962417495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962417495.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_319816777.pdb -s /var/tmp/to_scwrl_319816777.seq -o /var/tmp/from_scwrl_319816777.pdb > /var/tmp/scwrl_319816777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_319816777.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1077042831.pdb -s /var/tmp/to_scwrl_1077042831.seq -o /var/tmp/from_scwrl_1077042831.pdb > /var/tmp/scwrl_1077042831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077042831.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1414360816.pdb -s /var/tmp/to_scwrl_1414360816.seq -o /var/tmp/from_scwrl_1414360816.pdb > /var/tmp/scwrl_1414360816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414360816.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1105254625.pdb -s /var/tmp/to_scwrl_1105254625.seq -o /var/tmp/from_scwrl_1105254625.pdb > /var/tmp/scwrl_1105254625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105254625.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1256846794.pdb -s /var/tmp/to_scwrl_1256846794.seq -o /var/tmp/from_scwrl_1256846794.pdb > /var/tmp/scwrl_1256846794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256846794.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_886730496.pdb -s /var/tmp/to_scwrl_886730496.seq -o /var/tmp/from_scwrl_886730496.pdb > /var/tmp/scwrl_886730496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_886730496.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_906914008.pdb -s /var/tmp/to_scwrl_906914008.seq -o /var/tmp/from_scwrl_906914008.pdb > /var/tmp/scwrl_906914008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906914008.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_731463637.pdb -s /var/tmp/to_scwrl_731463637.seq -o /var/tmp/from_scwrl_731463637.pdb > /var/tmp/scwrl_731463637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731463637.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_980702069.pdb -s /var/tmp/to_scwrl_980702069.seq -o /var/tmp/from_scwrl_980702069.pdb > /var/tmp/scwrl_980702069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_980702069.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_813985136.pdb -s /var/tmp/to_scwrl_813985136.seq -o /var/tmp/from_scwrl_813985136.pdb > /var/tmp/scwrl_813985136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_813985136.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2051986769.pdb -s /var/tmp/to_scwrl_2051986769.seq -o /var/tmp/from_scwrl_2051986769.pdb > /var/tmp/scwrl_2051986769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2051986769.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_712232142.pdb -s /var/tmp/to_scwrl_712232142.seq -o /var/tmp/from_scwrl_712232142.pdb > /var/tmp/scwrl_712232142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_712232142.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1836869552.pdb -s /var/tmp/to_scwrl_1836869552.seq -o /var/tmp/from_scwrl_1836869552.pdb > /var/tmp/scwrl_1836869552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836869552.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_653089325.pdb -s /var/tmp/to_scwrl_653089325.seq -o /var/tmp/from_scwrl_653089325.pdb > /var/tmp/scwrl_653089325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_653089325.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_38947216.pdb -s /var/tmp/to_scwrl_38947216.seq -o /var/tmp/from_scwrl_38947216.pdb > /var/tmp/scwrl_38947216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38947216.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1714467999.pdb -s /var/tmp/to_scwrl_1714467999.seq -o /var/tmp/from_scwrl_1714467999.pdb > /var/tmp/scwrl_1714467999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1714467999.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1910678958.pdb -s /var/tmp/to_scwrl_1910678958.seq -o /var/tmp/from_scwrl_1910678958.pdb > /var/tmp/scwrl_1910678958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1910678958.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_8353293.pdb -s /var/tmp/to_scwrl_8353293.seq -o /var/tmp/from_scwrl_8353293.pdb > /var/tmp/scwrl_8353293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_8353293.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1972142799.pdb -s /var/tmp/to_scwrl_1972142799.seq -o /var/tmp/from_scwrl_1972142799.pdb > /var/tmp/scwrl_1972142799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1972142799.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1781211953.pdb -s /var/tmp/to_scwrl_1781211953.seq -o /var/tmp/from_scwrl_1781211953.pdb > /var/tmp/scwrl_1781211953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1781211953.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1309979199.pdb -s /var/tmp/to_scwrl_1309979199.seq -o /var/tmp/from_scwrl_1309979199.pdb > /var/tmp/scwrl_1309979199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1309979199.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2022602316.pdb -s /var/tmp/to_scwrl_2022602316.seq -o /var/tmp/from_scwrl_2022602316.pdb > /var/tmp/scwrl_2022602316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022602316.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_699914196.pdb -s /var/tmp/to_scwrl_699914196.seq -o /var/tmp/from_scwrl_699914196.pdb > /var/tmp/scwrl_699914196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_699914196.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_161960021.pdb -s /var/tmp/to_scwrl_161960021.seq -o /var/tmp/from_scwrl_161960021.pdb > /var/tmp/scwrl_161960021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161960021.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_383202692.pdb -s /var/tmp/to_scwrl_383202692.seq -o /var/tmp/from_scwrl_383202692.pdb > /var/tmp/scwrl_383202692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_383202692.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_608556984.pdb -s /var/tmp/to_scwrl_608556984.seq -o /var/tmp/from_scwrl_608556984.pdb > /var/tmp/scwrl_608556984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608556984.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_662805673.pdb -s /var/tmp/to_scwrl_662805673.seq -o /var/tmp/from_scwrl_662805673.pdb > /var/tmp/scwrl_662805673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_662805673.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_23664133.pdb -s /var/tmp/to_scwrl_23664133.seq -o /var/tmp/from_scwrl_23664133.pdb > /var/tmp/scwrl_23664133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_23664133.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1400848680.pdb -s /var/tmp/to_scwrl_1400848680.seq -o /var/tmp/from_scwrl_1400848680.pdb > /var/tmp/scwrl_1400848680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400848680.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1748714876.pdb -s /var/tmp/to_scwrl_1748714876.seq -o /var/tmp/from_scwrl_1748714876.pdb > /var/tmp/scwrl_1748714876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748714876.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_986081628.pdb -s /var/tmp/to_scwrl_986081628.seq -o /var/tmp/from_scwrl_986081628.pdb > /var/tmp/scwrl_986081628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986081628.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1720665457.pdb -s /var/tmp/to_scwrl_1720665457.seq -o /var/tmp/from_scwrl_1720665457.pdb > /var/tmp/scwrl_1720665457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720665457.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_678274061.pdb -s /var/tmp/to_scwrl_678274061.seq -o /var/tmp/from_scwrl_678274061.pdb > /var/tmp/scwrl_678274061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678274061.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_252958797.pdb -s /var/tmp/to_scwrl_252958797.seq -o /var/tmp/from_scwrl_252958797.pdb > /var/tmp/scwrl_252958797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252958797.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0293)A179.C and (T0293)E180.N only 0.000 apart, marking (T0293)E180.N as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CA only 0.000 apart, marking (T0293)E180.CA as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CA only 0.000 apart, marking (T0293)E180.CA as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.CB only 0.000 apart, marking (T0293)E180.CB as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CB only 0.000 apart, marking (T0293)E180.CB as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CB only 0.000 apart, marking (T0293)E180.CB as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.CG only 0.000 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.CG only 0.000 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CG only 0.000 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CG only 0.000 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.CD only 0.000 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.CD only 0.000 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.CD only 0.000 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CD only 0.000 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CD only 0.000 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.OE1 only 0.000 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.OE1 only 0.000 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.OE1 only 0.000 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.OE1 only 0.000 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.OE1 only 0.000 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.OE1 only 0.000 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.OE1 and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.OE2 only 0.000 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.OE2 and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.OE1 and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.O only 0.000 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.O and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.OE2 and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.OE1 and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.C only 0.000 apart, marking (T0293)E180.C as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_678436436.pdb -s /var/tmp/to_scwrl_678436436.seq -o /var/tmp/from_scwrl_678436436.pdb > /var/tmp/scwrl_678436436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678436436.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1935120855.pdb -s /var/tmp/to_scwrl_1935120855.seq -o /var/tmp/from_scwrl_1935120855.pdb > /var/tmp/scwrl_1935120855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1935120855.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1139689292.pdb -s /var/tmp/to_scwrl_1139689292.seq -o /var/tmp/from_scwrl_1139689292.pdb > /var/tmp/scwrl_1139689292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139689292.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1585350444.pdb -s /var/tmp/to_scwrl_1585350444.seq -o /var/tmp/from_scwrl_1585350444.pdb > /var/tmp/scwrl_1585350444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585350444.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_519100845.pdb -s /var/tmp/to_scwrl_519100845.seq -o /var/tmp/from_scwrl_519100845.pdb > /var/tmp/scwrl_519100845.log Error: Couldn't open file /var/tmp/from_scwrl_519100845.pdb or /var/tmp/from_scwrl_519100845.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_519100845_b.pdb or decoys//var/tmp/from_scwrl_519100845_b.pdb.gz for input Trying /var/tmp/from_scwrl_519100845_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_519100845_b.pdb or /var/tmp/from_scwrl_519100845_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_519100845_a.pdb or decoys//var/tmp/from_scwrl_519100845_a.pdb.gz for input Trying /var/tmp/from_scwrl_519100845_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_519100845_a.pdb or /var/tmp/from_scwrl_519100845_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_519100845.pdb or /var/tmp/from_scwrl_519100845_b.pdb or /var/tmp/from_scwrl_519100845_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2120391361.pdb -s /var/tmp/to_scwrl_2120391361.seq -o /var/tmp/from_scwrl_2120391361.pdb > /var/tmp/scwrl_2120391361.log Error: Couldn't open file /var/tmp/from_scwrl_2120391361.pdb or /var/tmp/from_scwrl_2120391361.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2120391361_b.pdb or decoys//var/tmp/from_scwrl_2120391361_b.pdb.gz for input Trying /var/tmp/from_scwrl_2120391361_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2120391361_b.pdb or /var/tmp/from_scwrl_2120391361_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2120391361_a.pdb or decoys//var/tmp/from_scwrl_2120391361_a.pdb.gz for input Trying /var/tmp/from_scwrl_2120391361_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2120391361_a.pdb or /var/tmp/from_scwrl_2120391361_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2120391361.pdb or /var/tmp/from_scwrl_2120391361_b.pdb or /var/tmp/from_scwrl_2120391361_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_251851933.pdb -s /var/tmp/to_scwrl_251851933.seq -o /var/tmp/from_scwrl_251851933.pdb > /var/tmp/scwrl_251851933.log Error: Couldn't open file /var/tmp/from_scwrl_251851933.pdb or /var/tmp/from_scwrl_251851933.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_251851933_b.pdb or decoys//var/tmp/from_scwrl_251851933_b.pdb.gz for input Trying /var/tmp/from_scwrl_251851933_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_251851933_b.pdb or /var/tmp/from_scwrl_251851933_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_251851933_a.pdb or decoys//var/tmp/from_scwrl_251851933_a.pdb.gz for input Trying /var/tmp/from_scwrl_251851933_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_251851933_a.pdb or /var/tmp/from_scwrl_251851933_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_251851933.pdb or /var/tmp/from_scwrl_251851933_b.pdb or /var/tmp/from_scwrl_251851933_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_423603967.pdb -s /var/tmp/to_scwrl_423603967.seq -o /var/tmp/from_scwrl_423603967.pdb > /var/tmp/scwrl_423603967.log Error: Couldn't open file /var/tmp/from_scwrl_423603967.pdb or /var/tmp/from_scwrl_423603967.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_423603967_b.pdb or decoys//var/tmp/from_scwrl_423603967_b.pdb.gz for input Trying /var/tmp/from_scwrl_423603967_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_423603967_b.pdb or /var/tmp/from_scwrl_423603967_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_423603967_a.pdb or decoys//var/tmp/from_scwrl_423603967_a.pdb.gz for input Trying /var/tmp/from_scwrl_423603967_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_423603967_a.pdb or /var/tmp/from_scwrl_423603967_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_423603967.pdb or /var/tmp/from_scwrl_423603967_b.pdb or /var/tmp/from_scwrl_423603967_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_685139857.pdb -s /var/tmp/to_scwrl_685139857.seq -o /var/tmp/from_scwrl_685139857.pdb > /var/tmp/scwrl_685139857.log Error: Couldn't open file /var/tmp/from_scwrl_685139857.pdb or /var/tmp/from_scwrl_685139857.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_685139857_b.pdb or decoys//var/tmp/from_scwrl_685139857_b.pdb.gz for input Trying /var/tmp/from_scwrl_685139857_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_685139857_b.pdb or /var/tmp/from_scwrl_685139857_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_685139857_a.pdb or decoys//var/tmp/from_scwrl_685139857_a.pdb.gz for input Trying /var/tmp/from_scwrl_685139857_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_685139857_a.pdb or /var/tmp/from_scwrl_685139857_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_685139857.pdb or /var/tmp/from_scwrl_685139857_b.pdb or /var/tmp/from_scwrl_685139857_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2088721485.pdb -s /var/tmp/to_scwrl_2088721485.seq -o /var/tmp/from_scwrl_2088721485.pdb > /var/tmp/scwrl_2088721485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088721485.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1076693292.pdb -s /var/tmp/to_scwrl_1076693292.seq -o /var/tmp/from_scwrl_1076693292.pdb > /var/tmp/scwrl_1076693292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1076693292.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_724087073.pdb -s /var/tmp/to_scwrl_724087073.seq -o /var/tmp/from_scwrl_724087073.pdb > /var/tmp/scwrl_724087073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724087073.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1655705838.pdb -s /var/tmp/to_scwrl_1655705838.seq -o /var/tmp/from_scwrl_1655705838.pdb > /var/tmp/scwrl_1655705838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655705838.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_839888604.pdb -s /var/tmp/to_scwrl_839888604.seq -o /var/tmp/from_scwrl_839888604.pdb > /var/tmp/scwrl_839888604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_839888604.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_732440366.pdb -s /var/tmp/to_scwrl_732440366.seq -o /var/tmp/from_scwrl_732440366.pdb > /var/tmp/scwrl_732440366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_732440366.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1480364990.pdb -s /var/tmp/to_scwrl_1480364990.seq -o /var/tmp/from_scwrl_1480364990.pdb > /var/tmp/scwrl_1480364990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1480364990.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_473616911.pdb -s /var/tmp/to_scwrl_473616911.seq -o /var/tmp/from_scwrl_473616911.pdb > /var/tmp/scwrl_473616911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473616911.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2042419566.pdb -s /var/tmp/to_scwrl_2042419566.seq -o /var/tmp/from_scwrl_2042419566.pdb > /var/tmp/scwrl_2042419566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042419566.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1355483660.pdb -s /var/tmp/to_scwrl_1355483660.seq -o /var/tmp/from_scwrl_1355483660.pdb > /var/tmp/scwrl_1355483660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1355483660.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1173531106.pdb -s /var/tmp/to_scwrl_1173531106.seq -o /var/tmp/from_scwrl_1173531106.pdb > /var/tmp/scwrl_1173531106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173531106.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_56895940.pdb -s /var/tmp/to_scwrl_56895940.seq -o /var/tmp/from_scwrl_56895940.pdb > /var/tmp/scwrl_56895940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_56895940.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1738686352.pdb -s /var/tmp/to_scwrl_1738686352.seq -o /var/tmp/from_scwrl_1738686352.pdb > /var/tmp/scwrl_1738686352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1738686352.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1782088091.pdb -s /var/tmp/to_scwrl_1782088091.seq -o /var/tmp/from_scwrl_1782088091.pdb > /var/tmp/scwrl_1782088091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782088091.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_719701613.pdb -s /var/tmp/to_scwrl_719701613.seq -o /var/tmp/from_scwrl_719701613.pdb > /var/tmp/scwrl_719701613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719701613.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1762350485.pdb -s /var/tmp/to_scwrl_1762350485.seq -o /var/tmp/from_scwrl_1762350485.pdb > /var/tmp/scwrl_1762350485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1762350485.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1035453125.pdb -s /var/tmp/to_scwrl_1035453125.seq -o /var/tmp/from_scwrl_1035453125.pdb > /var/tmp/scwrl_1035453125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035453125.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_320932842.pdb -s /var/tmp/to_scwrl_320932842.seq -o /var/tmp/from_scwrl_320932842.pdb > /var/tmp/scwrl_320932842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320932842.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_600948466.pdb -s /var/tmp/to_scwrl_600948466.seq -o /var/tmp/from_scwrl_600948466.pdb > /var/tmp/scwrl_600948466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600948466.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_608634935.pdb -s /var/tmp/to_scwrl_608634935.seq -o /var/tmp/from_scwrl_608634935.pdb > /var/tmp/scwrl_608634935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608634935.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_999206904.pdb -s /var/tmp/to_scwrl_999206904.seq -o /var/tmp/from_scwrl_999206904.pdb > /var/tmp/scwrl_999206904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999206904.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_853907264.pdb -s /var/tmp/to_scwrl_853907264.seq -o /var/tmp/from_scwrl_853907264.pdb > /var/tmp/scwrl_853907264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_853907264.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1287071370.pdb -s /var/tmp/to_scwrl_1287071370.seq -o /var/tmp/from_scwrl_1287071370.pdb > /var/tmp/scwrl_1287071370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287071370.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_786844112.pdb -s /var/tmp/to_scwrl_786844112.seq -o /var/tmp/from_scwrl_786844112.pdb > /var/tmp/scwrl_786844112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786844112.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1993596556.pdb -s /var/tmp/to_scwrl_1993596556.seq -o /var/tmp/from_scwrl_1993596556.pdb > /var/tmp/scwrl_1993596556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993596556.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_724938168.pdb -s /var/tmp/to_scwrl_724938168.seq -o /var/tmp/from_scwrl_724938168.pdb > /var/tmp/scwrl_724938168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724938168.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1305944957.pdb -s /var/tmp/to_scwrl_1305944957.seq -o /var/tmp/from_scwrl_1305944957.pdb > /var/tmp/scwrl_1305944957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305944957.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1966504271.pdb -s /var/tmp/to_scwrl_1966504271.seq -o /var/tmp/from_scwrl_1966504271.pdb > /var/tmp/scwrl_1966504271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966504271.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_976790102.pdb -s /var/tmp/to_scwrl_976790102.seq -o /var/tmp/from_scwrl_976790102.pdb > /var/tmp/scwrl_976790102.log sh: line 1: 1175 Killed scwrl3 -i /var/tmp/to_scwrl_976790102.pdb -s /var/tmp/to_scwrl_976790102.seq -o /var/tmp/from_scwrl_976790102.pdb >/var/tmp/scwrl_976790102.log Error: Couldn't open file /var/tmp/from_scwrl_976790102.pdb or /var/tmp/from_scwrl_976790102.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_976790102_b.pdb or decoys//var/tmp/from_scwrl_976790102_b.pdb.gz for input Trying /var/tmp/from_scwrl_976790102_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_976790102_b.pdb or /var/tmp/from_scwrl_976790102_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_976790102_a.pdb or decoys//var/tmp/from_scwrl_976790102_a.pdb.gz for input Trying /var/tmp/from_scwrl_976790102_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_976790102_a.pdb or /var/tmp/from_scwrl_976790102_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_976790102.pdb or /var/tmp/from_scwrl_976790102_b.pdb or /var/tmp/from_scwrl_976790102_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1729548924.pdb -s /var/tmp/to_scwrl_1729548924.seq -o /var/tmp/from_scwrl_1729548924.pdb > /var/tmp/scwrl_1729548924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1729548924.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_504160481.pdb -s /var/tmp/to_scwrl_504160481.seq -o /var/tmp/from_scwrl_504160481.pdb > /var/tmp/scwrl_504160481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504160481.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_918027940.pdb -s /var/tmp/to_scwrl_918027940.seq -o /var/tmp/from_scwrl_918027940.pdb > /var/tmp/scwrl_918027940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_918027940.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_658758570.pdb -s /var/tmp/to_scwrl_658758570.seq -o /var/tmp/from_scwrl_658758570.pdb > /var/tmp/scwrl_658758570.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_658758570.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1228247553.pdb -s /var/tmp/to_scwrl_1228247553.seq -o /var/tmp/from_scwrl_1228247553.pdb > /var/tmp/scwrl_1228247553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228247553.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_426250131.pdb -s /var/tmp/to_scwrl_426250131.seq -o /var/tmp/from_scwrl_426250131.pdb > /var/tmp/scwrl_426250131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_426250131.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1498647174.pdb -s /var/tmp/to_scwrl_1498647174.seq -o /var/tmp/from_scwrl_1498647174.pdb > /var/tmp/scwrl_1498647174.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498647174.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1960687920.pdb -s /var/tmp/to_scwrl_1960687920.seq -o /var/tmp/from_scwrl_1960687920.pdb > /var/tmp/scwrl_1960687920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960687920.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1906615122.pdb -s /var/tmp/to_scwrl_1906615122.seq -o /var/tmp/from_scwrl_1906615122.pdb > /var/tmp/scwrl_1906615122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1906615122.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1972264085.pdb -s /var/tmp/to_scwrl_1972264085.seq -o /var/tmp/from_scwrl_1972264085.pdb > /var/tmp/scwrl_1972264085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1972264085.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1855623839.pdb -s /var/tmp/to_scwrl_1855623839.seq -o /var/tmp/from_scwrl_1855623839.pdb > /var/tmp/scwrl_1855623839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855623839.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1114615135.pdb -s /var/tmp/to_scwrl_1114615135.seq -o /var/tmp/from_scwrl_1114615135.pdb > /var/tmp/scwrl_1114615135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114615135.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_998311545.pdb -s /var/tmp/to_scwrl_998311545.seq -o /var/tmp/from_scwrl_998311545.pdb > /var/tmp/scwrl_998311545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_998311545.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1912519779.pdb -s /var/tmp/to_scwrl_1912519779.seq -o /var/tmp/from_scwrl_1912519779.pdb > /var/tmp/scwrl_1912519779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1912519779.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_705817841.pdb -s /var/tmp/to_scwrl_705817841.seq -o /var/tmp/from_scwrl_705817841.pdb > /var/tmp/scwrl_705817841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_705817841.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_632915989.pdb -s /var/tmp/to_scwrl_632915989.seq -o /var/tmp/from_scwrl_632915989.pdb > /var/tmp/scwrl_632915989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632915989.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_484737745.pdb -s /var/tmp/to_scwrl_484737745.seq -o /var/tmp/from_scwrl_484737745.pdb > /var/tmp/scwrl_484737745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484737745.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_320684680.pdb -s /var/tmp/to_scwrl_320684680.seq -o /var/tmp/from_scwrl_320684680.pdb > /var/tmp/scwrl_320684680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320684680.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1668369113.pdb -s /var/tmp/to_scwrl_1668369113.seq -o /var/tmp/from_scwrl_1668369113.pdb > /var/tmp/scwrl_1668369113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1668369113.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_805670588.pdb -s /var/tmp/to_scwrl_805670588.seq -o /var/tmp/from_scwrl_805670588.pdb > /var/tmp/scwrl_805670588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805670588.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_921633146.pdb -s /var/tmp/to_scwrl_921633146.seq -o /var/tmp/from_scwrl_921633146.pdb > /var/tmp/scwrl_921633146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921633146.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_129520401.pdb -s /var/tmp/to_scwrl_129520401.seq -o /var/tmp/from_scwrl_129520401.pdb > /var/tmp/scwrl_129520401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_129520401.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1804877491.pdb -s /var/tmp/to_scwrl_1804877491.seq -o /var/tmp/from_scwrl_1804877491.pdb > /var/tmp/scwrl_1804877491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1804877491.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1775540409.pdb -s /var/tmp/to_scwrl_1775540409.seq -o /var/tmp/from_scwrl_1775540409.pdb > /var/tmp/scwrl_1775540409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775540409.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1416591772.pdb -s /var/tmp/to_scwrl_1416591772.seq -o /var/tmp/from_scwrl_1416591772.pdb > /var/tmp/scwrl_1416591772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416591772.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_444237956.pdb -s /var/tmp/to_scwrl_444237956.seq -o /var/tmp/from_scwrl_444237956.pdb > /var/tmp/scwrl_444237956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_444237956.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1621653319.pdb -s /var/tmp/to_scwrl_1621653319.seq -o /var/tmp/from_scwrl_1621653319.pdb > /var/tmp/scwrl_1621653319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621653319.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2141529940.pdb -s /var/tmp/to_scwrl_2141529940.seq -o /var/tmp/from_scwrl_2141529940.pdb > /var/tmp/scwrl_2141529940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141529940.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1750182913.pdb -s /var/tmp/to_scwrl_1750182913.seq -o /var/tmp/from_scwrl_1750182913.pdb > /var/tmp/scwrl_1750182913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750182913.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1440673943.pdb -s /var/tmp/to_scwrl_1440673943.seq -o /var/tmp/from_scwrl_1440673943.pdb > /var/tmp/scwrl_1440673943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440673943.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_970836395.pdb -s /var/tmp/to_scwrl_970836395.seq -o /var/tmp/from_scwrl_970836395.pdb > /var/tmp/scwrl_970836395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_970836395.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1332248191.pdb -s /var/tmp/to_scwrl_1332248191.seq -o /var/tmp/from_scwrl_1332248191.pdb > /var/tmp/scwrl_1332248191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332248191.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1944834424.pdb -s /var/tmp/to_scwrl_1944834424.seq -o /var/tmp/from_scwrl_1944834424.pdb > /var/tmp/scwrl_1944834424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1944834424.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1888864335.pdb -s /var/tmp/to_scwrl_1888864335.seq -o /var/tmp/from_scwrl_1888864335.pdb > /var/tmp/scwrl_1888864335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888864335.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1991006761.pdb -s /var/tmp/to_scwrl_1991006761.seq -o /var/tmp/from_scwrl_1991006761.pdb > /var/tmp/scwrl_1991006761.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991006761.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1025598331.pdb -s /var/tmp/to_scwrl_1025598331.seq -o /var/tmp/from_scwrl_1025598331.pdb > /var/tmp/scwrl_1025598331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1025598331.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_167630819.pdb -s /var/tmp/to_scwrl_167630819.seq -o /var/tmp/from_scwrl_167630819.pdb > /var/tmp/scwrl_167630819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_167630819.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1342170288.pdb -s /var/tmp/to_scwrl_1342170288.seq -o /var/tmp/from_scwrl_1342170288.pdb > /var/tmp/scwrl_1342170288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1342170288.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_838802604.pdb -s /var/tmp/to_scwrl_838802604.seq -o /var/tmp/from_scwrl_838802604.pdb > /var/tmp/scwrl_838802604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838802604.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2074245941.pdb -s /var/tmp/to_scwrl_2074245941.seq -o /var/tmp/from_scwrl_2074245941.pdb > /var/tmp/scwrl_2074245941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074245941.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1166950726.pdb -s /var/tmp/to_scwrl_1166950726.seq -o /var/tmp/from_scwrl_1166950726.pdb > /var/tmp/scwrl_1166950726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166950726.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_546942796.pdb -s /var/tmp/to_scwrl_546942796.seq -o /var/tmp/from_scwrl_546942796.pdb > /var/tmp/scwrl_546942796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546942796.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1041377430.pdb -s /var/tmp/to_scwrl_1041377430.seq -o /var/tmp/from_scwrl_1041377430.pdb > /var/tmp/scwrl_1041377430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1041377430.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_17778625.pdb -s /var/tmp/to_scwrl_17778625.seq -o /var/tmp/from_scwrl_17778625.pdb > /var/tmp/scwrl_17778625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_17778625.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_311978928.pdb -s /var/tmp/to_scwrl_311978928.seq -o /var/tmp/from_scwrl_311978928.pdb > /var/tmp/scwrl_311978928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_311978928.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1747195271.pdb -s /var/tmp/to_scwrl_1747195271.seq -o /var/tmp/from_scwrl_1747195271.pdb > /var/tmp/scwrl_1747195271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1747195271.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_650694614.pdb -s /var/tmp/to_scwrl_650694614.seq -o /var/tmp/from_scwrl_650694614.pdb > /var/tmp/scwrl_650694614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_650694614.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_796716674.pdb -s /var/tmp/to_scwrl_796716674.seq -o /var/tmp/from_scwrl_796716674.pdb > /var/tmp/scwrl_796716674.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796716674.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2067879951.pdb -s /var/tmp/to_scwrl_2067879951.seq -o /var/tmp/from_scwrl_2067879951.pdb > /var/tmp/scwrl_2067879951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067879951.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_171580081.pdb -s /var/tmp/to_scwrl_171580081.seq -o /var/tmp/from_scwrl_171580081.pdb > /var/tmp/scwrl_171580081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_171580081.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1602387261.pdb -s /var/tmp/to_scwrl_1602387261.seq -o /var/tmp/from_scwrl_1602387261.pdb > /var/tmp/scwrl_1602387261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602387261.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_842029450.pdb -s /var/tmp/to_scwrl_842029450.seq -o /var/tmp/from_scwrl_842029450.pdb > /var/tmp/scwrl_842029450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842029450.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_301100482.pdb -s /var/tmp/to_scwrl_301100482.seq -o /var/tmp/from_scwrl_301100482.pdb > /var/tmp/scwrl_301100482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301100482.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1259781105.pdb -s /var/tmp/to_scwrl_1259781105.seq -o /var/tmp/from_scwrl_1259781105.pdb > /var/tmp/scwrl_1259781105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259781105.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_470086213.pdb -s /var/tmp/to_scwrl_470086213.seq -o /var/tmp/from_scwrl_470086213.pdb > /var/tmp/scwrl_470086213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470086213.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1717692254.pdb -s /var/tmp/to_scwrl_1717692254.seq -o /var/tmp/from_scwrl_1717692254.pdb > /var/tmp/scwrl_1717692254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1717692254.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1704019061.pdb -s /var/tmp/to_scwrl_1704019061.seq -o /var/tmp/from_scwrl_1704019061.pdb > /var/tmp/scwrl_1704019061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704019061.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2091739532.pdb -s /var/tmp/to_scwrl_2091739532.seq -o /var/tmp/from_scwrl_2091739532.pdb > /var/tmp/scwrl_2091739532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2091739532.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1711738548.pdb -s /var/tmp/to_scwrl_1711738548.seq -o /var/tmp/from_scwrl_1711738548.pdb > /var/tmp/scwrl_1711738548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1711738548.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1306718328.pdb -s /var/tmp/to_scwrl_1306718328.seq -o /var/tmp/from_scwrl_1306718328.pdb > /var/tmp/scwrl_1306718328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306718328.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1384929828.pdb -s /var/tmp/to_scwrl_1384929828.seq -o /var/tmp/from_scwrl_1384929828.pdb > /var/tmp/scwrl_1384929828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384929828.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_535091296.pdb -s /var/tmp/to_scwrl_535091296.seq -o /var/tmp/from_scwrl_535091296.pdb > /var/tmp/scwrl_535091296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535091296.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_491482873.pdb -s /var/tmp/to_scwrl_491482873.seq -o /var/tmp/from_scwrl_491482873.pdb > /var/tmp/scwrl_491482873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_491482873.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1182280605.pdb -s /var/tmp/to_scwrl_1182280605.seq -o /var/tmp/from_scwrl_1182280605.pdb > /var/tmp/scwrl_1182280605.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182280605.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_276471984.pdb -s /var/tmp/to_scwrl_276471984.seq -o /var/tmp/from_scwrl_276471984.pdb > /var/tmp/scwrl_276471984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_276471984.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_335005987.pdb -s /var/tmp/to_scwrl_335005987.seq -o /var/tmp/from_scwrl_335005987.pdb > /var/tmp/scwrl_335005987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335005987.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_60395289.pdb -s /var/tmp/to_scwrl_60395289.seq -o /var/tmp/from_scwrl_60395289.pdb > /var/tmp/scwrl_60395289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_60395289.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_444102804.pdb -s /var/tmp/to_scwrl_444102804.seq -o /var/tmp/from_scwrl_444102804.pdb > /var/tmp/scwrl_444102804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_444102804.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1677176276.pdb -s /var/tmp/to_scwrl_1677176276.seq -o /var/tmp/from_scwrl_1677176276.pdb > /var/tmp/scwrl_1677176276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1677176276.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_899197894.pdb -s /var/tmp/to_scwrl_899197894.seq -o /var/tmp/from_scwrl_899197894.pdb > /var/tmp/scwrl_899197894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_899197894.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_370865098.pdb -s /var/tmp/to_scwrl_370865098.seq -o /var/tmp/from_scwrl_370865098.pdb > /var/tmp/scwrl_370865098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_370865098.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_696643356.pdb -s /var/tmp/to_scwrl_696643356.seq -o /var/tmp/from_scwrl_696643356.pdb > /var/tmp/scwrl_696643356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696643356.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1446140689.pdb -s /var/tmp/to_scwrl_1446140689.seq -o /var/tmp/from_scwrl_1446140689.pdb > /var/tmp/scwrl_1446140689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446140689.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1412242528.pdb -s /var/tmp/to_scwrl_1412242528.seq -o /var/tmp/from_scwrl_1412242528.pdb > /var/tmp/scwrl_1412242528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412242528.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_714421981.pdb -s /var/tmp/to_scwrl_714421981.seq -o /var/tmp/from_scwrl_714421981.pdb > /var/tmp/scwrl_714421981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714421981.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1758119618.pdb -s /var/tmp/to_scwrl_1758119618.seq -o /var/tmp/from_scwrl_1758119618.pdb > /var/tmp/scwrl_1758119618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758119618.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1011954153.pdb -s /var/tmp/to_scwrl_1011954153.seq -o /var/tmp/from_scwrl_1011954153.pdb > /var/tmp/scwrl_1011954153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1011954153.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1365116595.pdb -s /var/tmp/to_scwrl_1365116595.seq -o /var/tmp/from_scwrl_1365116595.pdb > /var/tmp/scwrl_1365116595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365116595.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_407352645.pdb -s /var/tmp/to_scwrl_407352645.seq -o /var/tmp/from_scwrl_407352645.pdb > /var/tmp/scwrl_407352645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_407352645.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_932350457.pdb -s /var/tmp/to_scwrl_932350457.seq -o /var/tmp/from_scwrl_932350457.pdb > /var/tmp/scwrl_932350457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932350457.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1536696676.pdb -s /var/tmp/to_scwrl_1536696676.seq -o /var/tmp/from_scwrl_1536696676.pdb > /var/tmp/scwrl_1536696676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536696676.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2009739906.pdb -s /var/tmp/to_scwrl_2009739906.seq -o /var/tmp/from_scwrl_2009739906.pdb > /var/tmp/scwrl_2009739906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2009739906.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1774379906.pdb -s /var/tmp/to_scwrl_1774379906.seq -o /var/tmp/from_scwrl_1774379906.pdb > /var/tmp/scwrl_1774379906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774379906.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1837797158.pdb -s /var/tmp/to_scwrl_1837797158.seq -o /var/tmp/from_scwrl_1837797158.pdb > /var/tmp/scwrl_1837797158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1837797158.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1122037364.pdb -s /var/tmp/to_scwrl_1122037364.seq -o /var/tmp/from_scwrl_1122037364.pdb > /var/tmp/scwrl_1122037364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1122037364.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_96982472.pdb -s /var/tmp/to_scwrl_96982472.seq -o /var/tmp/from_scwrl_96982472.pdb > /var/tmp/scwrl_96982472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_96982472.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1408005766.pdb -s /var/tmp/to_scwrl_1408005766.seq -o /var/tmp/from_scwrl_1408005766.pdb > /var/tmp/scwrl_1408005766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408005766.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_678572779.pdb -s /var/tmp/to_scwrl_678572779.seq -o /var/tmp/from_scwrl_678572779.pdb > /var/tmp/scwrl_678572779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678572779.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_41238357.pdb -s /var/tmp/to_scwrl_41238357.seq -o /var/tmp/from_scwrl_41238357.pdb > /var/tmp/scwrl_41238357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41238357.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_972260668.pdb -s /var/tmp/to_scwrl_972260668.seq -o /var/tmp/from_scwrl_972260668.pdb > /var/tmp/scwrl_972260668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972260668.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1985291107.pdb -s /var/tmp/to_scwrl_1985291107.seq -o /var/tmp/from_scwrl_1985291107.pdb > /var/tmp/scwrl_1985291107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1985291107.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1426168185.pdb -s /var/tmp/to_scwrl_1426168185.seq -o /var/tmp/from_scwrl_1426168185.pdb > /var/tmp/scwrl_1426168185.log sh: line 1: 1545 Killed scwrl3 -i /var/tmp/to_scwrl_1426168185.pdb -s /var/tmp/to_scwrl_1426168185.seq -o /var/tmp/from_scwrl_1426168185.pdb >/var/tmp/scwrl_1426168185.log Error: Couldn't open file /var/tmp/from_scwrl_1426168185.pdb or /var/tmp/from_scwrl_1426168185.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1426168185_b.pdb or decoys//var/tmp/from_scwrl_1426168185_b.pdb.gz for input Trying /var/tmp/from_scwrl_1426168185_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1426168185_b.pdb or /var/tmp/from_scwrl_1426168185_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1426168185_a.pdb or decoys//var/tmp/from_scwrl_1426168185_a.pdb.gz for input Trying /var/tmp/from_scwrl_1426168185_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1426168185_a.pdb or /var/tmp/from_scwrl_1426168185_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1426168185.pdb or /var/tmp/from_scwrl_1426168185_b.pdb or /var/tmp/from_scwrl_1426168185_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1507351963.pdb -s /var/tmp/to_scwrl_1507351963.seq -o /var/tmp/from_scwrl_1507351963.pdb > /var/tmp/scwrl_1507351963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1507351963.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_329290333.pdb -s /var/tmp/to_scwrl_329290333.seq -o /var/tmp/from_scwrl_329290333.pdb > /var/tmp/scwrl_329290333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329290333.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_460965144.pdb -s /var/tmp/to_scwrl_460965144.seq -o /var/tmp/from_scwrl_460965144.pdb > /var/tmp/scwrl_460965144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460965144.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1783823948.pdb -s /var/tmp/to_scwrl_1783823948.seq -o /var/tmp/from_scwrl_1783823948.pdb > /var/tmp/scwrl_1783823948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783823948.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_664296321.pdb -s /var/tmp/to_scwrl_664296321.seq -o /var/tmp/from_scwrl_664296321.pdb > /var/tmp/scwrl_664296321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_664296321.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_521360434.pdb -s /var/tmp/to_scwrl_521360434.seq -o /var/tmp/from_scwrl_521360434.pdb > /var/tmp/scwrl_521360434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521360434.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_80443105.pdb -s /var/tmp/to_scwrl_80443105.seq -o /var/tmp/from_scwrl_80443105.pdb > /var/tmp/scwrl_80443105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80443105.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_193988950.pdb -s /var/tmp/to_scwrl_193988950.seq -o /var/tmp/from_scwrl_193988950.pdb > /var/tmp/scwrl_193988950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_193988950.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1420558327.pdb -s /var/tmp/to_scwrl_1420558327.seq -o /var/tmp/from_scwrl_1420558327.pdb > /var/tmp/scwrl_1420558327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420558327.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_451308203.pdb -s /var/tmp/to_scwrl_451308203.seq -o /var/tmp/from_scwrl_451308203.pdb > /var/tmp/scwrl_451308203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_451308203.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_890632306.pdb -s /var/tmp/to_scwrl_890632306.seq -o /var/tmp/from_scwrl_890632306.pdb > /var/tmp/scwrl_890632306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_890632306.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_719215370.pdb -s /var/tmp/to_scwrl_719215370.seq -o /var/tmp/from_scwrl_719215370.pdb > /var/tmp/scwrl_719215370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719215370.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1863550731.pdb -s /var/tmp/to_scwrl_1863550731.seq -o /var/tmp/from_scwrl_1863550731.pdb > /var/tmp/scwrl_1863550731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1863550731.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1605054287.pdb -s /var/tmp/to_scwrl_1605054287.seq -o /var/tmp/from_scwrl_1605054287.pdb > /var/tmp/scwrl_1605054287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1605054287.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_329851341.pdb -s /var/tmp/to_scwrl_329851341.seq -o /var/tmp/from_scwrl_329851341.pdb > /var/tmp/scwrl_329851341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329851341.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_728021237.pdb -s /var/tmp/to_scwrl_728021237.seq -o /var/tmp/from_scwrl_728021237.pdb > /var/tmp/scwrl_728021237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728021237.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_822687236.pdb -s /var/tmp/to_scwrl_822687236.seq -o /var/tmp/from_scwrl_822687236.pdb > /var/tmp/scwrl_822687236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822687236.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_737203986.pdb -s /var/tmp/to_scwrl_737203986.seq -o /var/tmp/from_scwrl_737203986.pdb > /var/tmp/scwrl_737203986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_737203986.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1660371693.pdb -s /var/tmp/to_scwrl_1660371693.seq -o /var/tmp/from_scwrl_1660371693.pdb > /var/tmp/scwrl_1660371693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660371693.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_211900265.pdb -s /var/tmp/to_scwrl_211900265.seq -o /var/tmp/from_scwrl_211900265.pdb > /var/tmp/scwrl_211900265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211900265.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_599460245.pdb -s /var/tmp/to_scwrl_599460245.seq -o /var/tmp/from_scwrl_599460245.pdb > /var/tmp/scwrl_599460245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599460245.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1287267953.pdb -s /var/tmp/to_scwrl_1287267953.seq -o /var/tmp/from_scwrl_1287267953.pdb > /var/tmp/scwrl_1287267953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287267953.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2049697423.pdb -s /var/tmp/to_scwrl_2049697423.seq -o /var/tmp/from_scwrl_2049697423.pdb > /var/tmp/scwrl_2049697423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2049697423.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1721497609.pdb -s /var/tmp/to_scwrl_1721497609.seq -o /var/tmp/from_scwrl_1721497609.pdb > /var/tmp/scwrl_1721497609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1721497609.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1384250425.pdb -s /var/tmp/to_scwrl_1384250425.seq -o /var/tmp/from_scwrl_1384250425.pdb > /var/tmp/scwrl_1384250425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384250425.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1310219542.pdb -s /var/tmp/to_scwrl_1310219542.seq -o /var/tmp/from_scwrl_1310219542.pdb > /var/tmp/scwrl_1310219542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1310219542.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_252586742.pdb -s /var/tmp/to_scwrl_252586742.seq -o /var/tmp/from_scwrl_252586742.pdb > /var/tmp/scwrl_252586742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252586742.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1425488783.pdb -s /var/tmp/to_scwrl_1425488783.seq -o /var/tmp/from_scwrl_1425488783.pdb > /var/tmp/scwrl_1425488783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1425488783.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_134996563.pdb -s /var/tmp/to_scwrl_134996563.seq -o /var/tmp/from_scwrl_134996563.pdb > /var/tmp/scwrl_134996563.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_134996563.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_90394202.pdb -s /var/tmp/to_scwrl_90394202.seq -o /var/tmp/from_scwrl_90394202.pdb > /var/tmp/scwrl_90394202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_90394202.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_704173322.pdb -s /var/tmp/to_scwrl_704173322.seq -o /var/tmp/from_scwrl_704173322.pdb > /var/tmp/scwrl_704173322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704173322.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1642348527.pdb -s /var/tmp/to_scwrl_1642348527.seq -o /var/tmp/from_scwrl_1642348527.pdb > /var/tmp/scwrl_1642348527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642348527.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_419684536.pdb -s /var/tmp/to_scwrl_419684536.seq -o /var/tmp/from_scwrl_419684536.pdb > /var/tmp/scwrl_419684536.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419684536.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1165138466.pdb -s /var/tmp/to_scwrl_1165138466.seq -o /var/tmp/from_scwrl_1165138466.pdb > /var/tmp/scwrl_1165138466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165138466.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1278688828.pdb -s /var/tmp/to_scwrl_1278688828.seq -o /var/tmp/from_scwrl_1278688828.pdb > /var/tmp/scwrl_1278688828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1278688828.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1083980856.pdb -s /var/tmp/to_scwrl_1083980856.seq -o /var/tmp/from_scwrl_1083980856.pdb > /var/tmp/scwrl_1083980856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083980856.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1686498900.pdb -s /var/tmp/to_scwrl_1686498900.seq -o /var/tmp/from_scwrl_1686498900.pdb > /var/tmp/scwrl_1686498900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686498900.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1359131933.pdb -s /var/tmp/to_scwrl_1359131933.seq -o /var/tmp/from_scwrl_1359131933.pdb > /var/tmp/scwrl_1359131933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1359131933.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1277969806.pdb -s /var/tmp/to_scwrl_1277969806.seq -o /var/tmp/from_scwrl_1277969806.pdb > /var/tmp/scwrl_1277969806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1277969806.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_959573581.pdb -s /var/tmp/to_scwrl_959573581.seq -o /var/tmp/from_scwrl_959573581.pdb > /var/tmp/scwrl_959573581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_959573581.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1810440136.pdb -s /var/tmp/to_scwrl_1810440136.seq -o /var/tmp/from_scwrl_1810440136.pdb > /var/tmp/scwrl_1810440136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1810440136.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_21118465.pdb -s /var/tmp/to_scwrl_21118465.seq -o /var/tmp/from_scwrl_21118465.pdb > /var/tmp/scwrl_21118465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_21118465.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1678788950.pdb -s /var/tmp/to_scwrl_1678788950.seq -o /var/tmp/from_scwrl_1678788950.pdb > /var/tmp/scwrl_1678788950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678788950.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1526507221.pdb -s /var/tmp/to_scwrl_1526507221.seq -o /var/tmp/from_scwrl_1526507221.pdb > /var/tmp/scwrl_1526507221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526507221.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1626172752.pdb -s /var/tmp/to_scwrl_1626172752.seq -o /var/tmp/from_scwrl_1626172752.pdb > /var/tmp/scwrl_1626172752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626172752.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2008640292.pdb -s /var/tmp/to_scwrl_2008640292.seq -o /var/tmp/from_scwrl_2008640292.pdb > /var/tmp/scwrl_2008640292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2008640292.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_107044811.pdb -s /var/tmp/to_scwrl_107044811.seq -o /var/tmp/from_scwrl_107044811.pdb > /var/tmp/scwrl_107044811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107044811.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_301376341.pdb -s /var/tmp/to_scwrl_301376341.seq -o /var/tmp/from_scwrl_301376341.pdb > /var/tmp/scwrl_301376341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301376341.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_598360631.pdb -s /var/tmp/to_scwrl_598360631.seq -o /var/tmp/from_scwrl_598360631.pdb > /var/tmp/scwrl_598360631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598360631.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1767416505.pdb -s /var/tmp/to_scwrl_1767416505.seq -o /var/tmp/from_scwrl_1767416505.pdb > /var/tmp/scwrl_1767416505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1767416505.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_513276606.pdb -s /var/tmp/to_scwrl_513276606.seq -o /var/tmp/from_scwrl_513276606.pdb > /var/tmp/scwrl_513276606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513276606.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1197820876.pdb -s /var/tmp/to_scwrl_1197820876.seq -o /var/tmp/from_scwrl_1197820876.pdb > /var/tmp/scwrl_1197820876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197820876.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_907200812.pdb -s /var/tmp/to_scwrl_907200812.seq -o /var/tmp/from_scwrl_907200812.pdb > /var/tmp/scwrl_907200812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_907200812.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_415490383.pdb -s /var/tmp/to_scwrl_415490383.seq -o /var/tmp/from_scwrl_415490383.pdb > /var/tmp/scwrl_415490383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_415490383.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_771834839.pdb -s /var/tmp/to_scwrl_771834839.seq -o /var/tmp/from_scwrl_771834839.pdb > /var/tmp/scwrl_771834839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_771834839.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_143967590.pdb -s /var/tmp/to_scwrl_143967590.seq -o /var/tmp/from_scwrl_143967590.pdb > /var/tmp/scwrl_143967590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143967590.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1725709925.pdb -s /var/tmp/to_scwrl_1725709925.seq -o /var/tmp/from_scwrl_1725709925.pdb > /var/tmp/scwrl_1725709925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1725709925.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1024421581.pdb -s /var/tmp/to_scwrl_1024421581.seq -o /var/tmp/from_scwrl_1024421581.pdb > /var/tmp/scwrl_1024421581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1024421581.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1569456373.pdb -s /var/tmp/to_scwrl_1569456373.seq -o /var/tmp/from_scwrl_1569456373.pdb > /var/tmp/scwrl_1569456373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569456373.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1860706489.pdb -s /var/tmp/to_scwrl_1860706489.seq -o /var/tmp/from_scwrl_1860706489.pdb > /var/tmp/scwrl_1860706489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860706489.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1114815783.pdb -s /var/tmp/to_scwrl_1114815783.seq -o /var/tmp/from_scwrl_1114815783.pdb > /var/tmp/scwrl_1114815783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114815783.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_126146049.pdb -s /var/tmp/to_scwrl_126146049.seq -o /var/tmp/from_scwrl_126146049.pdb > /var/tmp/scwrl_126146049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126146049.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1355571369.pdb -s /var/tmp/to_scwrl_1355571369.seq -o /var/tmp/from_scwrl_1355571369.pdb > /var/tmp/scwrl_1355571369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1355571369.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1534500319.pdb -s /var/tmp/to_scwrl_1534500319.seq -o /var/tmp/from_scwrl_1534500319.pdb > /var/tmp/scwrl_1534500319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1534500319.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1291284515.pdb -s /var/tmp/to_scwrl_1291284515.seq -o /var/tmp/from_scwrl_1291284515.pdb > /var/tmp/scwrl_1291284515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1291284515.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_486776551.pdb -s /var/tmp/to_scwrl_486776551.seq -o /var/tmp/from_scwrl_486776551.pdb > /var/tmp/scwrl_486776551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_486776551.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_470997529.pdb -s /var/tmp/to_scwrl_470997529.seq -o /var/tmp/from_scwrl_470997529.pdb > /var/tmp/scwrl_470997529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470997529.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_830299769.pdb -s /var/tmp/to_scwrl_830299769.seq -o /var/tmp/from_scwrl_830299769.pdb > /var/tmp/scwrl_830299769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_830299769.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1845908484.pdb -s /var/tmp/to_scwrl_1845908484.seq -o /var/tmp/from_scwrl_1845908484.pdb > /var/tmp/scwrl_1845908484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845908484.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1748967335.pdb -s /var/tmp/to_scwrl_1748967335.seq -o /var/tmp/from_scwrl_1748967335.pdb > /var/tmp/scwrl_1748967335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748967335.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1789873349.pdb -s /var/tmp/to_scwrl_1789873349.seq -o /var/tmp/from_scwrl_1789873349.pdb > /var/tmp/scwrl_1789873349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789873349.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1508864973.pdb -s /var/tmp/to_scwrl_1508864973.seq -o /var/tmp/from_scwrl_1508864973.pdb > /var/tmp/scwrl_1508864973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508864973.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1770085800.pdb -s /var/tmp/to_scwrl_1770085800.seq -o /var/tmp/from_scwrl_1770085800.pdb > /var/tmp/scwrl_1770085800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770085800.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1321178652.pdb -s /var/tmp/to_scwrl_1321178652.seq -o /var/tmp/from_scwrl_1321178652.pdb > /var/tmp/scwrl_1321178652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1321178652.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_887888548.pdb -s /var/tmp/to_scwrl_887888548.seq -o /var/tmp/from_scwrl_887888548.pdb > /var/tmp/scwrl_887888548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887888548.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1248774906.pdb -s /var/tmp/to_scwrl_1248774906.seq -o /var/tmp/from_scwrl_1248774906.pdb > /var/tmp/scwrl_1248774906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1248774906.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1182335297.pdb -s /var/tmp/to_scwrl_1182335297.seq -o /var/tmp/from_scwrl_1182335297.pdb > /var/tmp/scwrl_1182335297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182335297.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_994933360.pdb -s /var/tmp/to_scwrl_994933360.seq -o /var/tmp/from_scwrl_994933360.pdb > /var/tmp/scwrl_994933360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994933360.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1550151247.pdb -s /var/tmp/to_scwrl_1550151247.seq -o /var/tmp/from_scwrl_1550151247.pdb > /var/tmp/scwrl_1550151247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550151247.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1780695929.pdb -s /var/tmp/to_scwrl_1780695929.seq -o /var/tmp/from_scwrl_1780695929.pdb > /var/tmp/scwrl_1780695929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780695929.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_614866218.pdb -s /var/tmp/to_scwrl_614866218.seq -o /var/tmp/from_scwrl_614866218.pdb > /var/tmp/scwrl_614866218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_614866218.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_2063427854.pdb -s /var/tmp/to_scwrl_2063427854.seq -o /var/tmp/from_scwrl_2063427854.pdb > /var/tmp/scwrl_2063427854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2063427854.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_831033159.pdb -s /var/tmp/to_scwrl_831033159.seq -o /var/tmp/from_scwrl_831033159.pdb > /var/tmp/scwrl_831033159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831033159.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 225 ; scwrl3 -i /var/tmp/to_scwrl_1522067029.pdb -s /var/tmp/to_scwrl_1522067029.seq -o /var/tmp/from_scwrl_1522067029.pdb > /var/tmp/scwrl_1522067029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522067029.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 67.0408 sec, elapsed time= 1607.66 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 94.1497 shub_TS1 costs 0 real_cost = 100.922 nFOLD_TS5-scwrl costs 0 real_cost = 262.883 nFOLD_TS5 costs 0 real_cost = 359.138 nFOLD_TS4-scwrl costs 0 real_cost = 245.33 nFOLD_TS4 costs 0 real_cost = 358.593 nFOLD_TS3-scwrl costs 0 real_cost = 187.559 nFOLD_TS3 costs 0 real_cost = 266.889 nFOLD_TS2-scwrl costs 0 real_cost = 271.798 nFOLD_TS2 costs 0 real_cost = 385.796 nFOLD_TS1-scwrl costs 0 real_cost = 145.734 nFOLD_TS1 costs 0 real_cost = 232.699 mGen-3D_TS1-scwrl costs 0 real_cost = 149.464 mGen-3D_TS1 costs 0 real_cost = 236.226 keasar-server_TS5-scwrl costs 0 real_cost = 83.3009 keasar-server_TS5 costs 0 real_cost = 77.1008 keasar-server_TS4-scwrl costs 0 real_cost = 87.9641 keasar-server_TS4 costs 0 real_cost = 84.6011 keasar-server_TS3-scwrl costs 0 real_cost = 71.4952 keasar-server_TS3 costs 0 real_cost = 68.8669 keasar-server_TS2-scwrl costs 0 real_cost = 85.1356 keasar-server_TS2 costs 0 real_cost = 86.6741 keasar-server_TS1-scwrl costs 0 real_cost = 66.925 keasar-server_TS1 costs 0 real_cost = 61.652 karypis.srv_TS5-scwrl costs 0 real_cost = 144.789 karypis.srv_TS5 costs 0 real_cost = 143.963 karypis.srv_TS4-scwrl costs 0 real_cost = 184.753 karypis.srv_TS4 costs 0 real_cost = 183.223 karypis.srv_TS3-scwrl costs 0 real_cost = 138.064 karypis.srv_TS3 costs 0 real_cost = 137.106 karypis.srv_TS2-scwrl costs 0 real_cost = 79.2618 karypis.srv_TS2 costs 0 real_cost = 76.962 karypis.srv_TS1-scwrl costs 0 real_cost = 46.0765 karypis.srv_TS1 costs 0 real_cost = 41.8458 karypis.srv.4_TS1-scwrl costs 0 real_cost = 344.441 karypis.srv.4_TS1 costs 0 real_cost = 344.44 karypis.srv.2_TS5-scwrl costs 0 real_cost = 86.7216 karypis.srv.2_TS5 costs 0 real_cost = 86.7213 karypis.srv.2_TS4-scwrl costs 0 real_cost = 47.637 karypis.srv.2_TS4 costs 0 real_cost = 47.4676 karypis.srv.2_TS3-scwrl costs 0 real_cost = 157.036 karypis.srv.2_TS3 costs 0 real_cost = 157.031 karypis.srv.2_TS2-scwrl costs 0 real_cost = 86.1024 karypis.srv.2_TS2 costs 0 real_cost = 86.6165 karypis.srv.2_TS1-scwrl costs 0 real_cost = 61.8122 karypis.srv.2_TS1 costs 0 real_cost = 62.0004 gtg_AL5-scwrl costs 0 real_cost = 384.132 gtg_AL5 costs 0 real_cost = 467.727 gtg_AL4-scwrl costs 0 real_cost = 395.052 gtg_AL4 costs 0 real_cost = 477.683 gtg_AL3-scwrl costs 0 real_cost = 311.662 gtg_AL3 costs 0 real_cost = 404.075 gtg_AL2-scwrl costs 0 real_cost = 324.939 gtg_AL2 costs 0 real_cost = 438.467 gtg_AL1-scwrl costs 0 real_cost = 316.91 gtg_AL1 costs 0 real_cost = 366.279 forecast-s_AL5-scwrl costs 0 real_cost = 278.599 forecast-s_AL5 costs 0 real_cost = 394.772 forecast-s_AL4-scwrl costs 0 real_cost = 225.49 forecast-s_AL4 costs 0 real_cost = 327.23 forecast-s_AL3-scwrl costs 0 real_cost = 259.066 forecast-s_AL3 costs 0 real_cost = 354.925 forecast-s_AL2-scwrl costs 0 real_cost = 367.88 forecast-s_AL2 costs 0 real_cost = 445.946 forecast-s_AL1-scwrl costs 0 real_cost = 152.986 forecast-s_AL1 costs 0 real_cost = 276.367 beautshotbase_TS1-scwrl costs 0 real_cost = 64.2068 beautshotbase_TS1 costs 0 real_cost = 62.0863 beautshot_TS1-scwrl costs 0 real_cost = 74.7243 beautshot_TS1 costs 0 real_cost = 73.4137 Zhang-Server_TS5-scwrl costs 0 real_cost = 37.7498 Zhang-Server_TS5 costs 0 real_cost = 41.7582 Zhang-Server_TS4-scwrl costs 0 real_cost = 25.155 Zhang-Server_TS4 costs 0 real_cost = 32.5733 Zhang-Server_TS3-scwrl costs 0 real_cost = 25.155 Zhang-Server_TS3 costs 0 real_cost = 32.5733 Zhang-Server_TS2-scwrl costs 0 real_cost = 21.4064 Zhang-Server_TS2 costs 0 real_cost = 30.5484 Zhang-Server_TS1-scwrl costs 0 real_cost = 6.96567 Zhang-Server_TS1 costs 0 real_cost = 6.77017 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 370.345 UNI-EID_sfst_AL5 costs 0 real_cost = 428.2 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 319.998 UNI-EID_sfst_AL4 costs 0 real_cost = 381.13 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 198.669 UNI-EID_sfst_AL3 costs 0 real_cost = 284.039 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 244.024 UNI-EID_sfst_AL2 costs 0 real_cost = 318.204 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 170.235 UNI-EID_sfst_AL1 costs 0 real_cost = 265.85 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 96.7839 UNI-EID_expm_TS1 costs 0 real_cost = 202.579 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 290.132 UNI-EID_bnmx_TS5 costs 0 real_cost = 407.651 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 330.02 UNI-EID_bnmx_TS4 costs 0 real_cost = 426.577 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 219.525 UNI-EID_bnmx_TS3 costs 0 real_cost = 329.562 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 185.999 UNI-EID_bnmx_TS2 costs 0 real_cost = 300.767 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 144.54 UNI-EID_bnmx_TS1 costs 0 real_cost = 248.352 SPARKS2_TS5-scwrl costs 0 real_cost = 155.278 SPARKS2_TS5 costs 0 real_cost = 156.176 SPARKS2_TS4-scwrl costs 0 real_cost = 156.534 SPARKS2_TS4 costs 0 real_cost = 163.621 SPARKS2_TS3-scwrl costs 0 real_cost = 115.24 SPARKS2_TS3 costs 0 real_cost = 116.047 SPARKS2_TS2-scwrl costs 0 real_cost = 45.653 SPARKS2_TS2 costs 0 real_cost = 50.6948 SPARKS2_TS1-scwrl costs 0 real_cost = 51.0081 SPARKS2_TS1 costs 0 real_cost = 47.2816 SP4_TS5-scwrl costs 0 real_cost = 176.103 SP4_TS5 costs 0 real_cost = 182.112 SP4_TS4-scwrl costs 0 real_cost = 289.829 SP4_TS4 costs 0 real_cost = 289.25 SP4_TS3-scwrl costs 0 real_cost = 132.201 SP4_TS3 costs 0 real_cost = 128.997 SP4_TS2-scwrl costs 0 real_cost = 37.7825 SP4_TS2 costs 0 real_cost = 34.7871 SP4_TS1-scwrl costs 0 real_cost = 60.0481 SP4_TS1 costs 0 real_cost = 70.0215 SP3_TS5-scwrl costs 0 real_cost = 202.056 SP3_TS5 costs 0 real_cost = 199.488 SP3_TS4-scwrl costs 0 real_cost = 266.52 SP3_TS4 costs 0 real_cost = 269.509 SP3_TS3-scwrl costs 0 real_cost = 128.654 SP3_TS3 costs 0 real_cost = 128.283 SP3_TS2-scwrl costs 0 real_cost = 31.4644 SP3_TS2 costs 0 real_cost = 38.5752 SP3_TS1-scwrl costs 0 real_cost = 67.2971 SP3_TS1 costs 0 real_cost = 74.353 SAM_T06_server_TS5-scwrl costs 0 real_cost = 291.221 SAM_T06_server_TS5 costs 0 real_cost = 252.45 SAM_T06_server_TS4-scwrl costs 0 real_cost = 226.379 SAM_T06_server_TS4 costs 0 real_cost = 197.718 SAM_T06_server_TS3-scwrl costs 0 real_cost = 240.254 SAM_T06_server_TS3 costs 0 real_cost = 188.475 SAM_T06_server_TS2-scwrl costs 0 real_cost = 323.207 SAM_T06_server_TS2 costs 0 real_cost = 226.723 SAM_T06_server_TS1-scwrl costs 0 real_cost = 102.601 SAM_T06_server_TS1 costs 0 real_cost = 104.557 SAM-T99_AL5-scwrl costs 0 real_cost = 224.621 SAM-T99_AL5 costs 0 real_cost = 337.91 SAM-T99_AL4-scwrl costs 0 real_cost = 227.013 SAM-T99_AL4 costs 0 real_cost = 337.194 SAM-T99_AL3-scwrl costs 0 real_cost = 231.812 SAM-T99_AL3 costs 0 real_cost = 342.959 SAM-T99_AL2-scwrl costs 0 real_cost = 157.201 SAM-T99_AL2 costs 0 real_cost = 282.498 SAM-T99_AL1-scwrl costs 0 real_cost = 165.635 SAM-T99_AL1 costs 0 real_cost = 293.131 SAM-T02_AL5-scwrl costs 0 real_cost = 198.766 SAM-T02_AL5 costs 0 real_cost = 314.019 SAM-T02_AL4-scwrl costs 0 real_cost = 190.813 SAM-T02_AL4 costs 0 real_cost = 311.46 SAM-T02_AL3-scwrl costs 0 real_cost = 142.616 SAM-T02_AL3 costs 0 real_cost = 276.804 SAM-T02_AL2-scwrl costs 0 real_cost = 147.959 SAM-T02_AL2 costs 0 real_cost = 274.882 SAM-T02_AL1-scwrl costs 0 real_cost = 180.967 SAM-T02_AL1 costs 0 real_cost = 297.038 ROKKY_TS5-scwrl costs 0 real_cost = 102.445 ROKKY_TS5 costs 0 real_cost = 106.33 ROKKY_TS4-scwrl costs 0 real_cost = 88.2994 ROKKY_TS4 costs 0 real_cost = 91.8858 ROKKY_TS3-scwrl costs 0 real_cost = 87.1901 ROKKY_TS3 costs 0 real_cost = 94.9538 ROKKY_TS2-scwrl costs 0 real_cost = 62.2626 ROKKY_TS1-scwrl costs 0 real_cost = 73.2137 ROKKY_TS1 costs 0 real_cost = 80.4639 ROBETTA_TS5-scwrl costs 0 real_cost = 26.8241 ROBETTA_TS5 costs 0 real_cost = 26.1958 ROBETTA_TS4-scwrl costs 0 real_cost = 55.1703 ROBETTA_TS4 costs 0 real_cost = 51.4758 ROBETTA_TS3-scwrl costs 0 real_cost = 58.5442 ROBETTA_TS3 costs 0 real_cost = 54.9154 ROBETTA_TS2-scwrl costs 0 real_cost = 112.943 ROBETTA_TS2 costs 0 real_cost = 118.21 ROBETTA_TS1-scwrl costs 0 real_cost = 72.2758 ROBETTA_TS1 costs 0 real_cost = 76.4415 RAPTOR_TS5-scwrl costs 0 real_cost = 156.011 RAPTOR_TS5 costs 0 real_cost = 165.237 RAPTOR_TS4-scwrl costs 0 real_cost = 115.19 RAPTOR_TS4 costs 0 real_cost = 116.893 RAPTOR_TS3-scwrl costs 0 real_cost = 133.31 RAPTOR_TS3 costs 0 real_cost = 130.677 RAPTOR_TS2-scwrl costs 0 real_cost = 37.0061 RAPTOR_TS2 costs 0 real_cost = 42.8942 RAPTOR_TS1-scwrl costs 0 real_cost = 40.6897 RAPTOR_TS1 costs 0 real_cost = 40.7057 RAPTORESS_TS5-scwrl costs 0 real_cost = 276.145 RAPTORESS_TS5 costs 0 real_cost = 287.462 RAPTORESS_TS4-scwrl costs 0 real_cost = 142.783 RAPTORESS_TS4 costs 0 real_cost = 152.628 RAPTORESS_TS3-scwrl costs 0 real_cost = 104.086 RAPTORESS_TS3 costs 0 real_cost = 106.894 RAPTORESS_TS2-scwrl costs 0 real_cost = 138.423 RAPTORESS_TS2 costs 0 real_cost = 132.233 RAPTORESS_TS1-scwrl costs 0 real_cost = 75.9842 RAPTORESS_TS1 costs 0 real_cost = 89.546 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 84.4534 RAPTOR-ACE_TS5 costs 0 real_cost = 88.4558 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 67.2971 RAPTOR-ACE_TS4 costs 0 real_cost = 74.353 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 21.3902 RAPTOR-ACE_TS3 costs 0 real_cost = 35.155 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 62.4348 RAPTOR-ACE_TS2 costs 0 real_cost = 76.4099 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 73.2386 RAPTOR-ACE_TS1 costs 0 real_cost = 81.0224 Pmodeller6_TS5-scwrl costs 0 real_cost = 23.5026 Pmodeller6_TS5 costs 0 real_cost = 22.0008 Pmodeller6_TS4-scwrl costs 0 real_cost = 20.9394 Pmodeller6_TS4 costs 0 real_cost = 18.4277 Pmodeller6_TS3-scwrl costs 0 real_cost = 68.6469 Pmodeller6_TS3 costs 0 real_cost = 66.033 Pmodeller6_TS2-scwrl costs 0 real_cost = 55.5071 Pmodeller6_TS2 costs 0 real_cost = 57.5818 Pmodeller6_TS1-scwrl costs 0 real_cost = 55.1703 Pmodeller6_TS1 costs 0 real_cost = 51.4758 Phyre-2_TS5-scwrl costs 0 real_cost = 174.285 Phyre-2_TS5 costs 0 real_cost = 164.449 Phyre-2_TS4-scwrl costs 0 real_cost = 227.17 Phyre-2_TS4 costs 0 real_cost = 222.186 Phyre-2_TS3-scwrl costs 0 real_cost = 209.857 Phyre-2_TS3 costs 0 real_cost = 205.928 Phyre-2_TS2-scwrl costs 0 real_cost = 204.51 Phyre-2_TS2 costs 0 real_cost = 203.403 Phyre-2_TS1-scwrl costs 0 real_cost = 210.625 Phyre-2_TS1 costs 0 real_cost = 202.215 Phyre-1_TS1-scwrl costs 0 real_cost = 274.357 Phyre-1_TS1 costs 0 real_cost = 258.862 Pcons6_TS5-scwrl costs 0 real_cost = 58.1685 Pcons6_TS5 costs 0 real_cost = 54.8462 Pcons6_TS4-scwrl costs 0 real_cost = 44.7762 Pcons6_TS4 costs 0 real_cost = 42.6289 Pcons6_TS3-scwrl costs 0 real_cost = 28.8594 Pcons6_TS3 costs 0 real_cost = 23.8301 Pcons6_TS2-scwrl costs 0 real_cost = 26.6449 Pcons6_TS2 costs 0 real_cost = 22.9015 Pcons6_TS1-scwrl costs 0 real_cost = 28.116 Pcons6_TS1 costs 0 real_cost = 24.2196 PROTINFO_TS5-scwrl costs 0 real_cost = 173.408 PROTINFO_TS5 costs 0 real_cost = 177.051 PROTINFO_TS4-scwrl costs 0 real_cost = 78.2204 PROTINFO_TS4 costs 0 real_cost = 77.6424 PROTINFO_TS3-scwrl costs 0 real_cost = 65.2989 PROTINFO_TS3 costs 0 real_cost = 65.8943 PROTINFO_TS2-scwrl costs 0 real_cost = 53.1935 PROTINFO_TS2 costs 0 real_cost = 53.4016 PROTINFO_TS1-scwrl costs 0 real_cost = 75.1834 PROTINFO_TS1 costs 0 real_cost = 75.6348 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 100.318 PROTINFO-AB_TS4 costs 0 real_cost = 102.206 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 97.3071 PROTINFO-AB_TS3 costs 0 real_cost = 95.3207 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 101.518 PROTINFO-AB_TS2 costs 0 real_cost = 105.854 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 97.5872 PROTINFO-AB_TS1 costs 0 real_cost = 101.33 POMYSL_TS5-scwrl costs 0 real_cost = 319.628 POMYSL_TS5 costs 0 real_cost = 322.497 POMYSL_TS4-scwrl costs 0 real_cost = 338.231 POMYSL_TS4 costs 0 real_cost = 338.959 POMYSL_TS3-scwrl costs 0 real_cost = 310.995 POMYSL_TS3 costs 0 real_cost = 311.166 POMYSL_TS2-scwrl costs 0 real_cost = 326.682 POMYSL_TS2 costs 0 real_cost = 325.049 POMYSL_TS1-scwrl costs 0 real_cost = 323.855 POMYSL_TS1 costs 0 real_cost = 325.936 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 128.823 NN_PUT_lab_TS1 costs 0 real_cost = 135.349 MetaTasser_TS5-scwrl costs 0 real_cost = 79.7668 MetaTasser_TS5 costs 0 real_cost = 80.6376 MetaTasser_TS4-scwrl costs 0 real_cost = 46.4289 MetaTasser_TS4 costs 0 real_cost = 54.1251 MetaTasser_TS3-scwrl costs 0 real_cost = 61.042 MetaTasser_TS3 costs 0 real_cost = 62.6007 MetaTasser_TS2-scwrl costs 0 real_cost = 73.1897 MetaTasser_TS2 costs 0 real_cost = 84.2461 MetaTasser_TS1-scwrl costs 0 real_cost = 84.032 MetaTasser_TS1 costs 0 real_cost = 80.6287 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 105.778 Ma-OPUS-server_TS5 costs 0 real_cost = 111.025 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 130.754 Ma-OPUS-server_TS4 costs 0 real_cost = 132.84 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 61.181 Ma-OPUS-server_TS3 costs 0 real_cost = 63.8421 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 109.922 Ma-OPUS-server_TS2 costs 0 real_cost = 124.816 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 64.7721 Ma-OPUS-server_TS1 costs 0 real_cost = 73.3012 LOOPP_TS5-scwrl costs 0 real_cost = 50.8633 LOOPP_TS5 costs 0 real_cost = 56.7919 LOOPP_TS4-scwrl costs 0 real_cost = 91.3484 LOOPP_TS4 costs 0 real_cost = 102.036 LOOPP_TS3-scwrl costs 0 real_cost = 56.6492 LOOPP_TS3 costs 0 real_cost = 57.3156 LOOPP_TS2-scwrl costs 0 real_cost = 83.4801 LOOPP_TS2 costs 0 real_cost = 88.9688 LOOPP_TS1-scwrl costs 0 real_cost = 53.2994 LOOPP_TS1 costs 0 real_cost = 55.9894 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 511.885 Huber-Torda-Server_TS5 costs 0 real_cost = 558.451 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 480.19 Huber-Torda-Server_TS4 costs 0 real_cost = 536.201 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 513.839 Huber-Torda-Server_TS3 costs 0 real_cost = 578.186 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 549.62 Huber-Torda-Server_TS2 costs 0 real_cost = 589.448 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 472.932 Huber-Torda-Server_TS1 costs 0 real_cost = 526.821 HHpred3_TS1-scwrl costs 0 real_cost = 25.8659 HHpred3_TS1 costs 0 real_cost = 32.0213 HHpred2_TS1-scwrl costs 0 real_cost = 24.6723 HHpred2_TS1 costs 0 real_cost = 31.2649 HHpred1_TS1-scwrl costs 0 real_cost = 19.9921 HHpred1_TS1 costs 0 real_cost = 23.2134 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 40.8975 GeneSilicoMetaServer_TS5 costs 0 real_cost = 46.3866 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 55.9009 GeneSilicoMetaServer_TS3 costs 0 real_cost = 64.9548 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 93.1252 GeneSilicoMetaServer_TS2 costs 0 real_cost = 97.973 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 75.185 GeneSilicoMetaServer_TS1 costs 0 real_cost = 84.7621 FUNCTION_TS5-scwrl costs 0 real_cost = 159.15 FUNCTION_TS5 costs 0 real_cost = 171.083 FUNCTION_TS4-scwrl costs 0 real_cost = 204.426 FUNCTION_TS4 costs 0 real_cost = 202.073 FUNCTION_TS3-scwrl costs 0 real_cost = 47.0134 FUNCTION_TS3 costs 0 real_cost = 55.0181 FUNCTION_TS2-scwrl costs 0 real_cost = 96.3542 FUNCTION_TS2 costs 0 real_cost = 95.574 FUNCTION_TS1-scwrl costs 0 real_cost = 40.1455 FUNCTION_TS1 costs 0 real_cost = 48.5364 FUGUE_AL5-scwrl costs 0 real_cost = 303.609 FUGUE_AL5 costs 0 real_cost = 403.746 FUGUE_AL4-scwrl costs 0 real_cost = 278.265 FUGUE_AL4 costs 0 real_cost = 429.629 FUGUE_AL3-scwrl costs 0 real_cost = 169.149 FUGUE_AL3 costs 0 real_cost = 292.686 FUGUE_AL2-scwrl costs 0 real_cost = 276.853 FUGUE_AL2 costs 0 real_cost = 394.289 FUGUE_AL1-scwrl costs 0 real_cost = 142.313 FUGUE_AL1 costs 0 real_cost = 274.806 FUGMOD_TS5-scwrl costs 0 real_cost = 216.749 FUGMOD_TS5 costs 0 real_cost = 218.659 FUGMOD_TS4-scwrl costs 0 real_cost = 214.612 FUGMOD_TS4 costs 0 real_cost = 216.806 FUGMOD_TS3-scwrl costs 0 real_cost = 76.9256 FUGMOD_TS2-scwrl costs 0 real_cost = 153.829 FUGMOD_TS2 costs 0 real_cost = 158.754 FUGMOD_TS1-scwrl costs 0 real_cost = 77.91 FUGMOD_TS1 costs 0 real_cost = 86.1365 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 309.835 FPSOLVER-SERVER_TS1 costs 0 real_cost = 314.516 FORTE2_AL5-scwrl costs 0 real_cost = 248.653 FORTE2_AL5 costs 0 real_cost = 387.807 FORTE2_AL4-scwrl costs 0 real_cost = 198.51 FORTE2_AL4 costs 0 real_cost = 334.95 FORTE2_AL3-scwrl costs 0 real_cost = 295.271 FORTE2_AL3 costs 0 real_cost = 451.686 FORTE2_AL2-scwrl costs 0 real_cost = 323.138 FORTE2_AL2 costs 0 real_cost = 454.671 FORTE2_AL1-scwrl costs 0 real_cost = 302.844 FORTE2_AL1 costs 0 real_cost = 458.414 FORTE1_AL5-scwrl costs 0 real_cost = 289.744 FORTE1_AL5 costs 0 real_cost = 449.468 FORTE1_AL4-scwrl costs 0 real_cost = 303.691 FORTE1_AL4 costs 0 real_cost = 456.673 FORTE1_AL3-scwrl costs 0 real_cost = 248.653 FORTE1_AL3 costs 0 real_cost = 387.807 FORTE1_AL2-scwrl costs 0 real_cost = 294.792 FORTE1_AL2 costs 0 real_cost = 435.746 FORTE1_AL1-scwrl costs 0 real_cost = 264.39 FORTE1_AL1 costs 0 real_cost = 424.567 FOLDpro_TS5-scwrl costs 0 real_cost = 232.177 FOLDpro_TS5 costs 0 real_cost = 236.377 FOLDpro_TS4-scwrl costs 0 real_cost = 223.382 FOLDpro_TS4 costs 0 real_cost = 227.379 FOLDpro_TS3-scwrl costs 0 real_cost = 201.05 FOLDpro_TS3 costs 0 real_cost = 211.053 FOLDpro_TS2-scwrl costs 0 real_cost = 216.429 FOLDpro_TS2 costs 0 real_cost = 222.212 FOLDpro_TS1-scwrl costs 0 real_cost = 175.163 FOLDpro_TS1 costs 0 real_cost = 183.879 FAMS_TS5-scwrl costs 0 real_cost = 44.7802 FAMS_TS5 costs 0 real_cost = 50.387 FAMS_TS4-scwrl costs 0 real_cost = 50.8287 FAMS_TS4 costs 0 real_cost = 60.338 FAMS_TS3-scwrl costs 0 real_cost = 50.8287 FAMS_TS3 costs 0 real_cost = 60.338 FAMS_TS2-scwrl costs 0 real_cost = 47.0134 FAMS_TS2 costs 0 real_cost = 55.0181 FAMS_TS1-scwrl costs 0 real_cost = 40.1455 FAMS_TS1 costs 0 real_cost = 48.5364 FAMSD_TS5-scwrl costs 0 real_cost = 46.3781 FAMSD_TS5 costs 0 real_cost = 54.4416 FAMSD_TS4-scwrl costs 0 real_cost = 50.8287 FAMSD_TS4 costs 0 real_cost = 60.338 FAMSD_TS3-scwrl costs 0 real_cost = 67.603 FAMSD_TS3 costs 0 real_cost = 75.5702 FAMSD_TS2-scwrl costs 0 real_cost = 120.648 FAMSD_TS2 costs 0 real_cost = 120.36 FAMSD_TS1-scwrl costs 0 real_cost = 28.1287 FAMSD_TS1 costs 0 real_cost = 29.8035 Distill_TS5-scwrl costs 0 real_cost = 538.247 Distill_TS4-scwrl costs 0 real_cost = 558.069 Distill_TS3-scwrl costs 0 real_cost = 543.836 Distill_TS2-scwrl costs 0 real_cost = 522.114 Distill_TS1-scwrl costs 0 real_cost = 534.244 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 330.089 CaspIta-FOX_TS5 costs 0 real_cost = 322.031 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 184.602 CaspIta-FOX_TS4 costs 0 real_cost = 175.401 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 150.342 CaspIta-FOX_TS3 costs 0 real_cost = 142.171 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 29.9116 CaspIta-FOX_TS2 costs 0 real_cost = 24.0842 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 142.187 CaspIta-FOX_TS1 costs 0 real_cost = 135.414 CIRCLE_TS5-scwrl costs 0 real_cost = 88.0808 CIRCLE_TS5 costs 0 real_cost = 89.8784 CIRCLE_TS4-scwrl costs 0 real_cost = 78.7236 CIRCLE_TS4 costs 0 real_cost = 86.5394 CIRCLE_TS3-scwrl costs 0 real_cost = 32.1901 CIRCLE_TS3 costs 0 real_cost = 37.1433 CIRCLE_TS2-scwrl costs 0 real_cost = 50.8287 CIRCLE_TS2 costs 0 real_cost = 60.338 CIRCLE_TS1-scwrl costs 0 real_cost = 44.7802 CIRCLE_TS1 costs 0 real_cost = 50.387 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 96.2253 Bilab-ENABLE_TS5 costs 0 real_cost = 96.1959 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 134.789 Bilab-ENABLE_TS4 costs 0 real_cost = 134.785 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 74.2474 Bilab-ENABLE_TS3 costs 0 real_cost = 74.273 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 94.589 Bilab-ENABLE_TS2 costs 0 real_cost = 94.5776 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 99.2688 Bilab-ENABLE_TS1 costs 0 real_cost = 100.045 BayesHH_TS1-scwrl costs 0 real_cost = 30.6291 BayesHH_TS1 costs 0 real_cost = 29.7225 ABIpro_TS5-scwrl costs 0 real_cost = 246.533 ABIpro_TS5 costs 0 real_cost = 245.96 ABIpro_TS4-scwrl costs 0 real_cost = 255.772 ABIpro_TS4 costs 0 real_cost = 255.53 ABIpro_TS3-scwrl costs 0 real_cost = 276.856 ABIpro_TS3 costs 0 real_cost = 276.857 ABIpro_TS2-scwrl costs 0 real_cost = 236.288 ABIpro_TS2 costs 0 real_cost = 236.29 ABIpro_TS1-scwrl costs 0 real_cost = 272.442 ABIpro_TS1 costs 0 real_cost = 272.453 3Dpro_TS5-scwrl costs 0 real_cost = 255.339 3Dpro_TS5 costs 0 real_cost = 255.772 3Dpro_TS4-scwrl costs 0 real_cost = 232.947 3Dpro_TS4 costs 0 real_cost = 235.325 3Dpro_TS3-scwrl costs 0 real_cost = 221.671 3Dpro_TS3 costs 0 real_cost = 231.611 3Dpro_TS2-scwrl costs 0 real_cost = 165.332 3Dpro_TS2 costs 0 real_cost = 173.389 3Dpro_TS1-scwrl costs 0 real_cost = 175.163 3Dpro_TS1 costs 0 real_cost = 183.879 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 150.298 3D-JIGSAW_TS5 costs 0 real_cost = 156.997 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 149.883 3D-JIGSAW_TS4 costs 0 real_cost = 151.733 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 152.627 3D-JIGSAW_TS3 costs 0 real_cost = 159.606 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 181.284 3D-JIGSAW_TS2 costs 0 real_cost = 186.489 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 140.449 3D-JIGSAW_TS1 costs 0 real_cost = 142.285 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 92.288 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 94.6101 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 299.322 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 298.612 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 295.492 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 294.789 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 308.144 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 303.03 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 310.382 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 306.973 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 172.226 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 169.337 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 165.395 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 162.114 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 151.143 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 148.374 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 161.812 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 159.288 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 155.983 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 152.819 shift232over2FromTry8.renum.pdb.gz costs 0 real_cost = 129.302 shift232over1FromTry8.renum.pdb.gz costs 0 real_cost = 126.703 shift232over1.2andMoveH33-37.renum.pdb.gz costs 0 real_cost = 130.985 shift232over1.2FromTry8.renum.pdb.gz costs 0 real_cost = 127.497 shift232over1.1FromTry8.renum.pdb.gz costs 0 real_cost = 127.822 lineup230and245take1.9rotateNtermSlide33-37helix.renum.pdb.gz costs 0 real_cost = 125.578 lineup230and245take1.2rotateNterminusAndMove.renum.pdb.gz costs 0 real_cost = 124.921 fromTry4.proto.pdb.gz costs 0 real_cost = 126.766 chimera1.pdb.gz costs 0 real_cost = 231.966 chimera-try5-server.pdb.gz costs 0 real_cost = 124.947 chimera-try5-align2.pdb.gz costs 0 real_cost = 126.456 T0293.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 129.476 T0293.try9-opt2.pdb.gz costs 0 real_cost = 128.597 T0293.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 130.867 T0293.try9-opt1.pdb.gz costs 0 real_cost = 132.289 T0293.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 128.842 T0293.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 124.739 T0293.try8-opt2.pdb.gz costs 0 real_cost = 126.117 T0293.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 127.094 T0293.try8-opt1.pdb.gz costs 0 real_cost = 123.265 T0293.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 121.328 T0293.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 124.795 T0293.try7-opt2.pdb.gz costs 0 real_cost = 124.614 T0293.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 124.841 T0293.try7-opt1.pdb.gz costs 0 real_cost = 126.623 T0293.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 125.538 T0293.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 122.605 T0293.try6-opt2.pdb.gz costs 0 real_cost = 125.451 T0293.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 127.353 T0293.try6-opt1.pdb.gz costs 0 real_cost = 123.22 T0293.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 121.728 T0293.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 130.68 T0293.try5-opt2.pdb.gz costs 0 real_cost = 128.647 T0293.try5-opt1.pdb.gz costs 0 real_cost = 128.415 T0293.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 127.256 T0293.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 118.43 T0293.try4-opt2.pdb.gz costs 0 real_cost = 114.621 T0293.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 117.105 T0293.try4-opt1.pdb.gz costs 0 real_cost = 115.269 T0293.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 113.837 T0293.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 188.57 T0293.try3-opt2.pdb.gz costs 0 real_cost = 186.163 T0293.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 191.392 T0293.try3-opt1.pdb.gz costs 0 real_cost = 187.429 T0293.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 185.888 T0293.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 201.221 T0293.try2-opt2.pdb.gz costs 0 real_cost = 204.671 T0293.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 205.908 T0293.try2-opt1.pdb.gz costs 0 real_cost = 203.771 T0293.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 199.619 T0293.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 131.035 T0293.try17-opt2.pdb.gz costs 0 real_cost = 131.073 T0293.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 130.339 T0293.try17-opt1.pdb.gz costs 0 real_cost = 132.12 T0293.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 128.43 T0293.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 115.721 T0293.try16-opt2.pdb.gz costs 0 real_cost = 115.263 T0293.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 119.036 T0293.try16-opt1.pdb.gz costs 0 real_cost = 118.165 T0293.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 116.327 T0293.try15-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 94.4419 T0293.try15-opt2.pdb.gz costs 0 real_cost = 95.4683 T0293.try15-opt2.gromacs0.pdb.gz costs 0 real_cost = 96.884 T0293.try15-opt1.pdb.gz costs 0 real_cost = 99.6398 T0293.try15-opt1-scwrl.pdb.gz costs 0 real_cost = 97.395 T0293.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 129.287 T0293.try14-opt2.pdb.gz costs 0 real_cost = 130.948 T0293.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 132.337 T0293.try14-opt1.pdb.gz costs 0 real_cost = 129.278 T0293.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 126.675 T0293.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 134.026 T0293.try13-opt2.pdb.gz costs 0 real_cost = 135.283 T0293.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 135.359 T0293.try13-opt1.pdb.gz costs 0 real_cost = 137.017 T0293.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 132.931 T0293.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 129.211 T0293.try12-opt2.pdb.gz costs 0 real_cost = 130.795 T0293.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 133.979 T0293.try12-opt1.pdb.gz costs 0 real_cost = 130.432 T0293.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 127.654 T0293.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 132.279 T0293.try11-opt2.pdb.gz costs 0 real_cost = 132.332 T0293.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 132.694 T0293.try11-opt1.pdb.gz costs 0 real_cost = 132.839 T0293.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 130.35 T0293.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 126.882 T0293.try10-opt2.pdb.gz costs 0 real_cost = 123.371 T0293.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 124.98 T0293.try10-opt1.pdb.gz costs 0 real_cost = 126.271 T0293.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 124.323 T0293.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 214.767 T0293.try1-opt2.pdb.gz costs 0 real_cost = 215.382 T0293.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 213.558 T0293.try1-opt1.pdb.gz costs 0 real_cost = 209.003 T0293.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 210.657 ../model5.ts-submitted costs 0 real_cost = 234.841 ../model4.ts-submitted costs 0 real_cost = 114.426 ../model3.ts-submitted costs 0 real_cost = 126.34 ../model2.ts-submitted costs 0 real_cost = 115.441 ../model1.ts-submitted costs 0 real_cost = 131.065 align5 costs 0 real_cost = 374.309 align4 costs 0 real_cost = 283.466 align3 costs 0 real_cost = 380.473 align2 costs 0 real_cost = 180.994 align1 costs 0 real_cost = 215.562 T0293.try1-opt2.pdb costs 0 real_cost = 215.507 model5-scwrl costs 0 real_cost = 339.947 model5.ts-submitted costs 0 real_cost = 234.841 model4-scwrl costs 0 real_cost = 115.195 model4.ts-submitted costs 0 real_cost = 114.426 model3-scwrl costs 0 real_cost = 123.628 model3.ts-submitted costs 0 real_cost = 126.34 model2-scwrl costs 0 real_cost = 114.276 model2.ts-submitted costs 0 real_cost = 115.441 model1-scwrl costs 0 real_cost = 129.44 model1.ts-submitted costs 0 real_cost = 131.061 2h00A costs 0 real_cost = -854.2 # command:CPU_time= 1489.47 sec, elapsed time= 3030.75 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty make: *** No rule to make target `decoys/evaluate_1.rdb'. make: Target `decoys/evaluate_1.pretty' not remade because of errors.