# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 3.43e-01 1wdyA 285 5.49e-01 1t77A 414 8.43e-01 1tzbA 302 1.66e+00 c.80.1.1 107470 1x9iA 302 1.75e+00 1mi1A 414 2.24e+00 a.169.1.1,b.55.1.6 79137,79138 1vmaA 306 2.76e+00 a.24.13.1,c.37.1.10 108887,108888 1iseA 185 4.10e+00 d.67.3.1 90691 1ek8A 185 4.35e+00 1ek8A d.67.3.1 59444 1wmaA 276 4.71e+00 1wiwA 290 4.75e+00 1s2oA 244 6.84e+00 2cbzA 237 6.94e+00 2d4pA 141 7.03e+00 2sil 381 7.43e+00 3sil b.68.1.1 27543 1dim 381 8.24e+00 3sil b.68.1.1 27544 1sz7A 200 8.49e+00 1f0cA 305 9.38e+00 1c8oA e.1.1.1 42676 1hu4A 288 9.55e+00 1hu4A 1n5dA 288 9.59e+00 c.2.1.2 80030 1s9uA 207 1.01e+01 a.184.1.1 105390 1wc9A 169 1.23e+01 1is1A 185 1.24e+01 d.67.3.1 83704 1vih 71 1.26e+01 1vih d.51.1.1 38807 1vig 71 1.32e+01 1vih d.51.1.1 38806 2exnA 136 1.41e+01 1jae 471 1.49e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1yovA 537 1.50e+01 1c8oA 300 1.59e+01 1c8oA e.1.1.1 42677 3sil 379 1.69e+01 3sil b.68.1.1 27542 1thjA 214 1.71e+01 1qreA b.81.1.5 28072 1uanA 227 1.76e+01 c.134.1.1 99135 1htjF 210 1.90e+01 1htjF a.91.1.1 61254 1yr1A 119 2.00e+01 1odeA 122 2.25e+01 d.79.1.2 86846 1regX 122 2.39e+01 1regX d.58.27.1 39406 1v76A 96 2.40e+01 1dtoA 221 2.50e+01 1dtoA b.91.1.1 28405 1s6dA 103 2.61e+01 a.52.1.3 105307 1ufyA 122 2.64e+01 d.79.1.2 88489 1jpeA 151 2.68e+01 b.1.17.1 77146 1ufzA 83 2.82e+01 a.5.9.1 107821 1wxaA 116 2.89e+01 1ywzA 175 2.90e+01 1o57A 291 2.99e+01 a.4.5.40,c.61.1.1 92483,92484 1dmtA 696 3.01e+01 1dmtA d.92.1.4 40296 1s72W 154 3.11e+01 d.59.1.1 105342 1qreA 247 3.40e+01 1qreA b.81.1.5 28066 1l6pA 125 3.41e+01 b.1.17.1 73626 1r1hA 696 3.47e+01 d.92.1.4 104756 1fe0A 68 3.49e+01 1cc8A d.58.17.1 39345 1b13A 54 3.50e+01 1rb9 g.41.5.1 45227 1ukuA 102 3.52e+01 d.58.5.2 99533 1iro 54 3.58e+01 1rb9 g.41.5.1 45223 1ooeA 236 3.58e+01 c.2.1.2 87196 1eaf 243 3.61e+01 1eaf c.43.1.1 32617 1jj2V 154 3.65e+01 1ffkT d.59.1.1 63107 1m4vA 204 3.70e+01 b.40.2.2,d.15.6.1 74459,74460 5rxn 54 3.76e+01 1rb9 g.41.5.1 45225 1vqoW 154 3.87e+01 2fiyA 309 3.87e+01 1k7kA 221 3.95e+01 c.51.4.1 72104 1b2oA 54 3.96e+01 1rb9 g.41.5.1 45233 2a0jA 149 3.97e+01 1fieA 731 4.00e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21879,22167,22168,37109 1f00I 282 4.03e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1jrmA 104 4.03e+01 d.206.1.1 67136 4rxn 54 4.06e+01 1rb9 g.41.5.1 45226 1b2jA 54 4.08e+01 1rb9 g.41.5.1 45231 1t8sA 484 4.09e+01 c.56.2.1 106679 1dpb 243 4.12e+01 1eaf c.43.1.1 32618 2azpA 318 4.14e+01 2ygsA 92 4.29e+01 1cy5A a.77.1.3 18431 1fzyA 149 4.32e+01 d.20.1.1 65072 1cy5A 97 4.37e+01 1cy5A a.77.1.3 18430 1uouA 474 4.41e+01 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1z6oM 191 4.42e+01 1vjoA 393 4.49e+01 c.67.1.3 100827 1jpnA 296 4.51e+01 a.24.13.1,c.37.1.10 67039,67040 1nzaA 103 4.55e+01 d.58.5.2 86444 1gmxA 108 4.57e+01 c.46.1.3 65355 1g61A 228 4.57e+01 1g61A d.126.1.1 41126 1vecA 206 4.67e+01 c.37.1.19 100575 2d2mA 140 4.95e+01 1ffkN 95 5.00e+01 1ffkN b.34.5.1 24606 1vpgA 192 5.03e+01 1m93B 245 5.03e+01 1ug1A 92 5.10e+01 b.34.2.1 99360 1rykA 69 5.26e+01 a.60.11.1 98105 1ws6A 171 5.27e+01 1ffkT 154 5.32e+01 1ffkT d.59.1.1 39527 1f13A 731 5.49e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21877,22163,22164,37107 1bd8 156 5.93e+01 1bd8 d.211.1.1 19157 2fb0A 94 5.99e+01 1cwwA 102 6.17e+01 1cy5A a.77.1.3 18434 1jj2L 194 6.25e+01 1ffkI d.12.1.2 63097 2g03A 194 6.38e+01 2f6sA 201 6.42e+01 1ad4A 266 6.51e+01 1aj2 c.1.21.1 29670 1mpyA 307 6.52e+01 1mpyA d.32.1.3,d.32.1.3 38508,38509 2bd0A 244 6.55e+01 1snc 149 6.74e+01 1snc b.40.1.1 24813 1ilyA 90 6.86e+01 c.55.4.1 71245 1sty 150 6.91e+01 1snc b.40.1.1 24812 1h5rA 293 7.00e+01 c.68.1.6 65623 1rfkA 98 7.05e+01 1fjgL 135 7.06e+01 1fjfL b.40.4.5 25346 2bgkA 278 7.07e+01 2cspA 130 7.12e+01 1umhA 184 7.13e+01 b.18.1.21 99605 1fshA 105 7.17e+01 1fshA a.4.5.31 60006 1cxpC 466 7.27e+01 1mhlC 1ge9A 184 7.33e+01 1dd5A d.67.3.1 60463 1ig8A 486 7.35e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2sns 149 7.44e+01 1snc b.40.1.1 24860 1ytlA 174 7.64e+01 1yzxA 226 7.69e+01 1mkeA 152 7.72e+01 b.55.1.4 79231 1ewxA 146 7.73e+01 1ewxA c.47.1.10 33062 1i37A 260 7.73e+01 1a28A a.123.1.1 61583 1h4lD 147 7.80e+01 a.74.1.1 70873 1qrkA 731 7.92e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21889,22187,22188,37119 1v2zA 111 8.15e+01 a.186.1.1 108300 1ik9A 213 8.22e+01 b.59.1.1,h.1.11.1 66176,66177 1irdB 146 8.24e+01 a.1.1.2 66287 1ggtB 731 8.25e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21882,22173,22174,37112 1iapA 211 8.28e+01 a.91.1.1 62119 1sskA 158 8.28e+01 b.148.1.1 105986 1j7yB 146 8.29e+01 a.1.1.2 66427 1e7lA 157 8.34e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1v3wA 173 8.48e+01 b.81.1.5 100291 1w6kA 732 8.49e+01 1gguA 731 8.50e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21885,22179,22180,37115 1uklC 61 8.55e+01 a.38.1.1 99495 1zo0A 126 8.58e+01 2cq2A 114 8.64e+01 2g09A 297 8.65e+01 2lbd 267 8.70e+01 2lbd a.123.1.1 19287 1mhlC 466 8.72e+01 1mhlC 1ls1A 295 8.93e+01 a.24.13.1,c.37.1.10 78170,78171 1nv8A 284 8.96e+01 c.66.1.30 86224