# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0293.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.9079 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 V 0.048 0.008 0.002 0.001 0.062 0.879 2 S 0.233 0.048 0.003 0.001 0.064 0.652 3 L 0.164 0.072 0.003 0.001 0.077 0.683 4 N 0.079 0.049 0.004 0.001 0.318 0.549 5 F 0.013 0.007 0.136 0.027 0.641 0.177 6 K 0.008 0.006 0.070 0.049 0.681 0.185 7 D 0.003 0.006 0.034 0.082 0.648 0.227 8 P 0.001 0.001 0.051 0.918 0.023 0.007 9 E 0.001 0.001 0.015 0.979 0.005 0.001 10 A 0.001 0.001 0.016 0.981 0.003 0.001 11 V 0.001 0.001 0.003 0.993 0.002 0.001 12 R 0.001 0.001 0.003 0.990 0.003 0.002 13 A 0.001 0.001 0.002 0.994 0.002 0.001 14 L 0.001 0.001 0.002 0.992 0.003 0.002 15 T 0.001 0.001 0.005 0.988 0.004 0.002 16 C 0.001 0.001 0.008 0.983 0.005 0.002 17 T 0.002 0.001 0.005 0.986 0.004 0.003 18 L 0.005 0.001 0.010 0.952 0.012 0.021 19 L 0.012 0.005 0.016 0.896 0.034 0.036 20 R 0.008 0.002 0.029 0.864 0.072 0.026 21 E 0.007 0.001 0.079 0.784 0.084 0.045 22 D 0.005 0.002 0.074 0.789 0.059 0.072 23 F 0.013 0.010 0.038 0.619 0.098 0.222 24 G 0.013 0.002 0.002 0.015 0.045 0.923 25 L 0.097 0.010 0.001 0.008 0.043 0.841 26 S 0.310 0.008 0.002 0.005 0.101 0.573 27 I 0.540 0.010 0.003 0.002 0.070 0.375 28 D 0.670 0.017 0.003 0.002 0.051 0.256 29 I 0.425 0.031 0.005 0.002 0.105 0.432 30 P 0.172 0.024 0.018 0.005 0.350 0.432 31 L 0.010 0.003 0.615 0.026 0.293 0.053 32 E 0.008 0.002 0.719 0.026 0.217 0.029 33 R 0.016 0.007 0.698 0.035 0.216 0.027 34 L 0.053 0.058 0.136 0.049 0.372 0.333 35 I 0.076 0.066 0.028 0.023 0.304 0.504 36 P 0.101 0.029 0.024 0.022 0.339 0.485 37 T 0.103 0.049 0.023 0.016 0.275 0.534 38 V 0.062 0.036 0.013 0.010 0.369 0.509 39 P 0.061 0.019 0.028 0.024 0.435 0.433 40 L 0.056 0.016 0.054 0.044 0.431 0.399 41 R 0.198 0.054 0.056 0.056 0.380 0.257 42 L 0.262 0.020 0.032 0.050 0.342 0.294 43 N 0.327 0.007 0.026 0.030 0.304 0.306 44 Y 0.816 0.009 0.011 0.027 0.070 0.066 45 I 0.914 0.004 0.006 0.021 0.024 0.032 46 H 0.923 0.002 0.006 0.019 0.021 0.029 47 W 0.791 0.006 0.006 0.036 0.035 0.125 48 V 0.414 0.012 0.005 0.025 0.070 0.474 49 E 0.207 0.008 0.005 0.019 0.119 0.642