# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0293.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.9079 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 V 0.033 0.002 0.001 0.001 0.009 0.002 0.954 2 S 0.348 0.059 0.005 0.005 0.017 0.009 0.557 3 L 0.453 0.061 0.008 0.009 0.048 0.010 0.412 4 N 0.446 0.019 0.035 0.009 0.040 0.027 0.424 5 F 0.130 0.032 0.126 0.037 0.070 0.223 0.381 6 K 0.034 0.021 0.028 0.030 0.375 0.236 0.276 7 D 0.005 0.005 0.001 0.004 0.646 0.002 0.338 8 P 0.001 0.001 0.013 0.937 0.002 0.043 0.005 9 E 0.001 0.001 0.009 0.969 0.001 0.020 0.001 10 A 0.001 0.001 0.011 0.982 0.001 0.004 0.001 11 V 0.001 0.001 0.004 0.992 0.001 0.002 0.001 12 R 0.001 0.001 0.003 0.988 0.001 0.007 0.001 13 A 0.001 0.001 0.004 0.968 0.001 0.026 0.001 14 L 0.001 0.001 0.003 0.970 0.002 0.021 0.003 15 T 0.002 0.001 0.012 0.952 0.005 0.022 0.006 16 C 0.002 0.001 0.019 0.939 0.004 0.032 0.004 17 T 0.003 0.001 0.021 0.893 0.005 0.071 0.006 18 L 0.013 0.005 0.043 0.737 0.021 0.150 0.030 19 L 0.073 0.020 0.052 0.559 0.039 0.118 0.139 20 R 0.087 0.009 0.135 0.354 0.115 0.105 0.196 21 E 0.023 0.003 0.126 0.353 0.070 0.393 0.032 22 D 0.017 0.001 0.114 0.166 0.081 0.543 0.077 23 F 0.095 0.023 0.046 0.091 0.146 0.256 0.344 24 G 0.234 0.015 0.007 0.011 0.061 0.192 0.481 25 L 0.436 0.020 0.001 0.003 0.036 0.006 0.497 26 S 0.622 0.020 0.001 0.003 0.009 0.005 0.341 27 I 0.714 0.007 0.001 0.003 0.014 0.004 0.258 28 D 0.781 0.012 0.002 0.002 0.025 0.006 0.173 29 I 0.673 0.048 0.003 0.002 0.073 0.003 0.198 30 P 0.219 0.017 0.007 0.002 0.037 0.005 0.712 31 L 0.010 0.002 0.640 0.122 0.019 0.178 0.030 32 E 0.005 0.001 0.600 0.091 0.022 0.270 0.012 33 R 0.015 0.008 0.632 0.105 0.033 0.133 0.075 34 L 0.107 0.149 0.135 0.102 0.147 0.118 0.241 35 I 0.097 0.036 0.051 0.022 0.166 0.065 0.562 36 P 0.080 0.022 0.030 0.011 0.122 0.119 0.617 37 T 0.077 0.043 0.023 0.011 0.223 0.080 0.542 38 V 0.087 0.026 0.010 0.006 0.363 0.013 0.496 39 P 0.065 0.017 0.051 0.021 0.091 0.095 0.661 40 L 0.136 0.036 0.069 0.036 0.258 0.161 0.304 41 R 0.262 0.027 0.048 0.023 0.181 0.116 0.343 42 L 0.395 0.017 0.035 0.019 0.056 0.037 0.442 43 N 0.462 0.005 0.026 0.020 0.258 0.038 0.191 44 Y 0.863 0.003 0.022 0.020 0.018 0.022 0.052 45 I 0.946 0.003 0.003 0.013 0.003 0.003 0.029 46 H 0.958 0.004 0.002 0.012 0.006 0.002 0.015 47 W 0.834 0.005 0.004 0.014 0.014 0.014 0.114 48 V 0.311 0.009 0.002 0.012 0.036 0.011 0.620 49 E 0.063 0.003 0.002 0.005 0.024 0.007 0.895