# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0293.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.9079 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 V 0.038 0.481 0.245 0.051 0.126 0.020 0.011 0.004 0.021 0.004 0.001 2 S 0.024 0.526 0.325 0.011 0.042 0.036 0.006 0.001 0.026 0.001 0.001 3 L 0.049 0.589 0.221 0.015 0.038 0.045 0.003 0.001 0.039 0.001 0.001 4 N 0.042 0.219 0.194 0.051 0.021 0.306 0.042 0.002 0.121 0.001 0.001 5 F 0.297 0.155 0.151 0.154 0.132 0.040 0.032 0.014 0.014 0.010 0.002 6 K 0.311 0.117 0.135 0.364 0.035 0.024 0.005 0.002 0.006 0.002 0.001 7 D 0.011 0.104 0.524 0.005 0.061 0.087 0.002 0.001 0.202 0.003 0.001 8 P 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 A 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 T 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 C 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 T 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.978 0.002 0.003 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 L 0.860 0.013 0.019 0.097 0.002 0.005 0.001 0.001 0.002 0.001 0.001 20 R 0.872 0.014 0.037 0.050 0.003 0.007 0.009 0.002 0.003 0.002 0.001 21 E 0.839 0.031 0.033 0.059 0.016 0.007 0.008 0.002 0.002 0.002 0.001 22 D 0.540 0.063 0.061 0.240 0.017 0.035 0.023 0.002 0.018 0.001 0.001 23 F 0.080 0.082 0.095 0.640 0.043 0.008 0.030 0.009 0.011 0.002 0.001 24 G 0.013 0.010 0.018 0.028 0.033 0.013 0.674 0.174 0.010 0.027 0.001 25 L 0.012 0.609 0.277 0.016 0.053 0.019 0.001 0.001 0.012 0.001 0.001 26 S 0.048 0.408 0.278 0.066 0.038 0.100 0.017 0.002 0.042 0.001 0.001 27 I 0.022 0.737 0.109 0.012 0.090 0.013 0.002 0.001 0.013 0.001 0.001 28 D 0.028 0.243 0.326 0.023 0.009 0.241 0.019 0.001 0.108 0.001 0.002 29 I 0.013 0.487 0.314 0.004 0.022 0.027 0.004 0.001 0.128 0.001 0.001 30 P 0.011 0.007 0.915 0.001 0.001 0.051 0.001 0.001 0.005 0.001 0.010 31 L 0.741 0.008 0.141 0.060 0.003 0.013 0.015 0.010 0.002 0.005 0.003 32 E 0.589 0.021 0.036 0.177 0.018 0.008 0.102 0.043 0.003 0.003 0.001 33 R 0.302 0.089 0.091 0.447 0.018 0.019 0.014 0.002 0.018 0.001 0.001 34 L 0.120 0.194 0.474 0.091 0.028 0.050 0.020 0.004 0.014 0.003 0.002 35 I 0.038 0.396 0.254 0.004 0.023 0.024 0.014 0.001 0.246 0.001 0.001 36 P 0.115 0.005 0.829 0.003 0.001 0.013 0.001 0.001 0.001 0.001 0.032 37 T 0.342 0.074 0.417 0.073 0.010 0.056 0.006 0.005 0.009 0.002 0.007 38 V 0.107 0.392 0.237 0.010 0.017 0.037 0.008 0.001 0.189 0.001 0.001 39 P 0.268 0.009 0.637 0.012 0.001 0.052 0.003 0.001 0.002 0.001 0.014 40 L 0.487 0.056 0.112 0.127 0.044 0.044 0.071 0.038 0.015 0.004 0.001 41 R 0.401 0.285 0.093 0.097 0.046 0.032 0.019 0.006 0.018 0.002 0.001 42 L 0.238 0.216 0.387 0.027 0.014 0.090 0.006 0.001 0.019 0.001 0.001 43 N 0.630 0.044 0.026 0.267 0.008 0.011 0.007 0.001 0.005 0.001 0.001 44 Y 0.142 0.489 0.070 0.053 0.192 0.015 0.021 0.002 0.014 0.001 0.001 45 I 0.182 0.593 0.149 0.017 0.011 0.026 0.001 0.001 0.021 0.001 0.001 46 H 0.257 0.459 0.088 0.046 0.043 0.033 0.008 0.001 0.064 0.001 0.001 47 W 0.243 0.215 0.303 0.053 0.028 0.096 0.025 0.003 0.032 0.002 0.002 48 V 0.322 0.241 0.228 0.124 0.017 0.041 0.004 0.001 0.020 0.001 0.001 49 E 0.449 0.125 0.198 0.066 0.056 0.024 0.038 0.009 0.012 0.023 0.001