# List of top-scoring protein chains for T0293.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 8.76e-01 1t9oA 54 1.28e+00 1smmA 54 3.30e+00 g.41.5.1 98923 1uuqA 440 3.37e+00 c.1.8.3 100015 1e4yA 214 3.38e+00 1zin c.37.1.1,g.41.2.1 31901,45181 1akeA 214 3.39e+00 1zin c.37.1.1,g.41.2.1 31905,45185 1e4vA 214 3.55e+00 1zin c.37.1.1,g.41.2.1 31903,45183 1t9qA 54 4.14e+00 1mof 55 4.22e+00 1mof h.3.2.1 46324 1c09A 54 4.27e+00 1rb9 g.41.5.1 45228 1t9pA 54 4.74e+00 1s24A 87 4.80e+00 g.41.5.1 98366 1b13A 54 6.08e+00 1rb9 g.41.5.1 45227 1iro 54 6.33e+00 1rb9 g.41.5.1 45223 1b2jA 54 6.39e+00 1rb9 g.41.5.1 45231 1b2oA 54 6.51e+00 1rb9 g.41.5.1 45233 1s9uA 207 6.75e+00 a.184.1.1 105390 1xe3A 245 7.91e+00 5rxn 54 8.59e+00 1rb9 g.41.5.1 45225 1h1dA 221 9.82e+00 c.66.1.1 83452 1be7 54 1.19e+01 1rb9 g.41.5.1 45232 1iu5A 53 1.22e+01 g.41.5.1 71434 1qoyA 318 1.23e+01 1qoyA h.4.4.1 45788 1eh1A 185 1.36e+01 1dd5A d.67.3.1 39565 1cr1A 296 1.40e+01 1cr1A c.37.1.11 32286 1e0jA 289 1.41e+01 1cr1A c.37.1.11 32290 1vecA 206 1.53e+01 c.37.1.19 100575 1g26A 31 1.53e+01 1g26A g.3.16.1 44381 2fviA 301 1.53e+01 1yk4A 52 1.66e+01 1yk5A 53 1.79e+01 1dpb 243 1.84e+01 1eaf c.43.1.1 32618 1x5kA 124 1.87e+01 1u5mA 73 1.92e+01 1x9iA 302 1.93e+01 2fekA 167 1.97e+01 1ywzA 175 1.98e+01 1dpd 243 2.09e+01 1eaf c.43.1.1 32624 1dpc 243 2.09e+01 1eaf c.43.1.1 32619 1eae 243 2.11e+01 1eaf c.43.1.1 32625 1o8xA 146 2.11e+01 c.47.1.10 86681 1lqbD 34 2.26e+01 1uzeA 589 2.48e+01 d.92.1.5 108174 1e8jA 52 2.58e+01 g.41.5.1 64796 1rdg 53 2.64e+01 1rb9 g.41.5.1 45221 1ayoA 130 2.68e+01 1ayoA b.2.4.1 22431 1brfA 53 2.71e+01 1rb9 g.41.5.1 45236 1bq8A 54 2.76e+01 1rb9 g.41.5.1 45237 1t5bA 201 2.77e+01 c.23.5.3 106433 1odkA 235 2.82e+01 c.56.2.1 86863 1vf8A 377 2.95e+01 1y7bA 542 2.96e+01 1r1dA 247 3.09e+01 c.69.1.29 96813 1q57A 503 3.12e+01 c.37.1.11,e.13.1.2 95867,95868 1utuA 108 3.13e+01 1msk 331 3.14e+01 1msk d.173.1.1 42495 2f4eA 180 3.18e+01 1tqhA 247 3.21e+01 c.69.1.29 107225 2c9yA 242 3.25e+01 2fmmE 133 3.33e+01 1wwvA 91 3.37e+01 1edyA 134 3.49e+01 1ayoA b.2.4.1 22428 1ak2 233 3.61e+01 1zin c.37.1.1,g.41.2.1 31894,45195 2fnjC 96 3.61e+01 2c9wC 97 3.64e+01 1lm8H 20 3.90e+01 2exnA 136 4.00e+01 2ayvA 166 4.08e+01 1vcbB 112 4.16e+01 1vcbB d.42.1.1 38633 1jj2P 95 4.20e+01 1ffkN b.34.5.1 63101 2csgA 424 4.22e+01 1vqoQ 96 4.25e+01 1spwA 39 4.38e+01 2fswA 107 4.38e+01 2ftcM 110 4.40e+01 1prxA 224 4.42e+01 1prxA c.47.1.10 33076 2ci1A 275 4.61e+01 2cw5A 255 4.63e+01 1regX 122 4.76e+01 1regX d.58.27.1 39406 1skz 119 4.93e+01 1skz g.3.15.1,g.3.15.1 44366,44367 2c6zA 284 4.99e+01 1naqA 112 5.06e+01 d.58.5.2 91761 1v5mA 136 5.13e+01 b.55.1.1 108379 2a0jA 149 5.18e+01 2cq2A 114 5.44e+01 2c3aA 286 5.44e+01 2erfA 209 5.57e+01 6rxn 46 5.61e+01 1rb9 g.41.5.1 45222 1z78A 215 5.79e+01 1zo0A 126 5.99e+01 1erw 105 6.06e+01 1erv c.47.1.1 32745 1s1hO 65 6.12e+01 i.1.1.1 105167 1k7yA 577 6.13e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 3sil 379 6.16e+01 3sil b.68.1.1 27542 2sil 381 6.18e+01 3sil b.68.1.1 27543 2fliA 220 6.20e+01 1qk8A 146 6.25e+01 1ewxA c.47.1.10 33061 1ewxA 146 6.26e+01 1ewxA c.47.1.10 33062 1f0lA 535 6.29e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2c36A 285 6.35e+01 1vrsD 134 6.38e+01 8rxnA 52 6.40e+01 1rb9 g.41.5.1 45215 1t77A 414 6.43e+01 1xygA 359 6.46e+01 1rb9 53 6.47e+01 1rb9 g.41.5.1 45214 1za4A 251 6.58e+01 1l2gA 287 6.67e+01 b.1.1.1 91048 1wwmA 190 6.67e+01 1jmaA 290 6.77e+01 b.1.1.1 63177 1pguA 615 6.78e+01 b.69.4.1,b.69.4.1 88069,88070 1ezkA 153 6.96e+01 1ewxA c.47.1.10 33063 1okdA 154 6.97e+01 c.47.1.10 93249 1fjnA 39 7.10e+01 1fjnA g.3.7.3 44171 1v29B 229 7.13e+01 2f06A 144 7.39e+01 1qcqA 148 7.42e+01 1u9aA d.20.1.1 38329 1z8sA 146 7.46e+01 1y25A 165 7.54e+01 1o7kA 131 7.65e+01 d.189.1.1 81144 1xvqA 175 7.69e+01 1sp1 29 7.85e+01 g.37.1.1 45051 1wiwA 290 7.87e+01 1gd5A 130 7.94e+01 1gd5A d.189.1.1 60439 1xxgA 233 7.99e+01 2rdvA 52 8.09e+01 1rb9 g.41.5.1 45217 2b9dA 52 8.22e+01 2bepA 159 8.29e+01 2cspA 130 8.35e+01 1nmsA 249 8.44e+01 c.17.1.1 85879 1kq6A 141 8.71e+01 d.189.1.1 91020 1qx3A 257 8.77e+01 c.17.1.1 96515 1cp3A 277 8.86e+01 1pauA c.17.1.1 30992 1iruA 246 8.88e+01 d.153.1.4 71352 1uc7A 125 8.89e+01 c.47.1.1 99163