# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ew8A 249 4.29e-02 1t3gA 159 8.85e-02 1regX 122 9.25e-02 1regX d.58.27.1 39406 2b9dA 52 2.87e-01 1mrzA 293 3.14e-01 b.43.5.1,c.26.1.3 91452,91453 2ci1A 275 3.15e-01 1wmaA 276 3.16e-01 1ht6A 405 3.35e-01 b.71.1.1,c.1.8.1 83629,83630 2bd0A 244 3.38e-01 2f9dA 125 4.47e-01 1wiwA 290 4.73e-01 1m93B 245 6.94e-01 1msk 331 7.83e-01 1msk d.173.1.1 42495 2erfA 209 7.92e-01 1jae 471 8.43e-01 1smd b.71.1.1,c.1.8.1 27773,28760 2c36A 285 9.98e-01 1ijyA 130 1.22e+00 1ijxA a.141.1.1 62517 1s7zA 117 1.40e+00 a.159.3.1 98715 1xhkA 187 1.64e+00 1tqhA 247 1.89e+00 c.69.1.29 107225 1udxA 416 1.89e+00 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1zymA 258 1.95e+00 1zymA a.60.10.1,c.8.1.2 18110,30705 8tlnE 316 2.00e+00 1hyt d.92.1.2 59075 1i24A 404 2.16e+00 c.2.1.2 83663 2cw5A 255 2.26e+00 1n40A 396 2.37e+00 a.104.1.1 79977 1m1cA 680 2.76e+00 e.42.1.1 78395 1xg5A 279 2.78e+00 1y7bA 542 2.78e+00 1jixA 351 2.94e+00 1c3jA c.87.1.1 63081 2bgkA 278 3.06e+00 1ey4A 149 3.40e+00 1snc b.40.1.1 24815 1xaoA 121 3.46e+00 1vjoA 393 3.59e+00 c.67.1.3 100827 1n4qB 377 3.62e+00 a.102.4.3 91636 2bi7A 384 3.73e+00 12asA 330 3.78e+00 12asA d.104.1.1 40783 2c1xA 456 3.88e+00 1m3sA 186 3.94e+00 c.80.1.3 78573 1v76A 96 4.07e+00 1iro 54 4.13e+00 1rb9 g.41.5.1 45223 1hdoA 206 4.16e+00 1he2A c.2.1.2 60965 1zo0A 126 4.27e+00 2gaxA 135 4.31e+00 1g61A 228 4.43e+00 1g61A d.126.1.1 41126 1u5mA 73 4.55e+00 1kq6A 141 4.58e+00 d.189.1.1 91020 1w2wB 191 4.61e+00 1wnyA 186 4.66e+00 1udzA 182 4.69e+00 b.51.1.1 99239 1bdb 277 4.75e+00 1bdb c.2.1.2 29874 1t15A 214 4.87e+00 c.15.1.3,c.15.1.3 99067,99068 2bh1A 250 4.88e+00 1z2wA 192 5.80e+00 1x9iA 302 6.02e+00 2bwnA 401 6.09e+00 1f2tA 149 6.19e+00 1f2tA c.37.1.12 32373 1gj7B 253 6.36e+00 1vcvA 226 6.53e+00 1yxmA 303 6.94e+00 1o8xA 146 7.13e+00 c.47.1.10 86681 1ro7A 259 7.28e+00 c.130.1.1 97667 1ja9A 274 7.33e+00 c.2.1.2 62817 2csgA 424 7.62e+00 1yp5A 58 8.38e+00 1r9hA 135 8.58e+00 d.26.1.1 97260 2end 138 8.88e+00 2end a.18.1.1 16400 1m8jA 181 9.38e+00 c.26.1.3 84875 1q7zA 566 9.44e+00 c.1.21.2,c.1.26.1 96090,96091 1k7kA 221 9.95e+00 c.51.4.1 72104 2fh7A 595 1.01e+01 1ej2A 181 1.08e+01 1f9aA c.26.1.3 59414 1yzsA 121 1.10e+01 1w18A 493 1.11e+01 1yljA 263 1.13e+01 1xw3A 110 1.13e+01 1x89A 178 1.17e+01 2bv5A 282 1.20e+01 1ve3A 227 1.21e+01 1fp3A 402 1.21e+01 1fp3A a.102.1.3 18842 1s5aA 150 1.22e+01 d.17.4.10 98525 1s1fA 406 1.25e+01 2fjbA 643 1.25e+01 1jnrA 643 1.25e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1wd7A 261 1.26e+01 1ud0A 113 1.29e+01 a.8.4.1 99198 1wimA 94 1.29e+01 1uzmA 247 1.30e+01 2ac3A 316 1.30e+01 2d4pA 141 1.31e+01 1w78A 422 1.31e+01 1z57A 339 1.33e+01 1muwA 386 1.34e+01 c.1.15.3 79495 2f0aA 98 1.34e+01 1yk4A 52 1.34e+01 1pieA 419 1.35e+01 d.14.1.5,d.58.26.7 94706,94707 1ijxA 127 1.36e+01 1ijxA a.141.1.1 62511 1ash 150 1.36e+01 1ash a.1.1.2 15622 2a2pA 129 1.37e+01 1ocsA 162 1.39e+01 d.189.1.1 92776 1k8kB 394 1.41e+01 c.55.1.1 68307 1vrvA 101 1.44e+01 1vsrA 136 1.47e+01 1vsrA c.52.1.15 33332 2aq5A 402 1.48e+01 1zw8A 64 1.50e+01 2gzqA 200 1.50e+01 1gxrA 337 1.52e+01 b.69.4.1 70722 1j77A 209 1.60e+01 1j77A a.132.1.2 62674 1xi1A 575 1.61e+01 1yj7A 171 1.63e+01 1wdtA 665 1.67e+01 1ufyA 122 1.72e+01 d.79.1.2 88489 1bsg 266 1.72e+01 1btl e.3.1.1 42729 1t07A 94 1.78e+01 d.279.1.1 106196 1wcwA 261 1.78e+01 1yr1A 119 1.81e+01 1fcyA 236 1.82e+01 2lbd a.123.1.1 19282 2d83A 363 1.85e+01 1xqaA 113 1.87e+01 1ysjA 404 1.93e+01 1q6zA 528 1.97e+01 1zud2 66 1.99e+01 1h30A 422 1.99e+01 b.29.1.4,b.29.1.4 76604,76605 1t7rA 269 2.02e+01 a.123.1.1 106635 1ub3A 220 2.04e+01 c.1.10.1 88395 2ghrA 302 2.05e+01 1fe0A 68 2.06e+01 1cc8A d.58.17.1 39345 1z6oM 191 2.07e+01 1zosA 230 2.17e+01 1du3A 130 2.17e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1tqzA 133 2.20e+01 1j8mF 297 2.22e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1i5gA 144 2.24e+01 1ewxA c.47.1.10 61784 2eifA 136 2.26e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1sc3A 178 2.26e+01 c.17.1.1 105416 1rdg 53 2.32e+01 1rb9 g.41.5.1 45221 1z8kA 193 2.34e+01 1vjeA 166 2.34e+01 d.185.1.2 100807 1hz6A 72 2.35e+01 2ptl d.15.7.1 61429 1ka8A 100 2.41e+01 a.4.5.20 72241 1wkcA 184 2.42e+01 1d2vA 104 2.48e+01 1d2vA a.93.1.2 18697 2cs3A 93 2.48e+01 1nmoA 247 2.50e+01 c.135.1.1 91980 1fexA 59 2.51e+01 a.4.1.3 59803 1fmcA 255 2.53e+01 1cydA c.2.1.2 29856 1vqvA 306 2.57e+01 1g5aA 628 2.60e+01 b.71.1.1,c.1.8.1 65152,65153 1jihA 531 2.62e+01 d.240.1.1,e.8.1.7 90374,90375 1le6A 123 2.62e+01 a.133.1.2 73862 1h1dA 221 2.62e+01 c.66.1.1 83452 1wloA 136 2.64e+01 1n6jG 35 2.77e+01 1f8mA 429 2.81e+01 1dquA c.1.12.7 29315 2a1iA 146 2.92e+01 1qopB 396 2.96e+01 2tysB c.79.1.1 35270 1oz9A 150 3.11e+01 d.92.1.15 93808 1po5A 476 3.15e+01 a.104.1.1 94963 1vq2A 193 3.15e+01 1vc1A 110 3.18e+01 c.13.2.1 108493 1bebA 162 3.23e+01 1bebA b.60.1.1 27115 1evlA 401 3.24e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2fa8A 105 3.26e+01 1lenB 52 3.27e+01 2ltnB 1qusA 322 3.32e+01 1ltm d.2.1.6 36991 1lt8A 406 3.35e+01 c.1.26.1 78186 1t5iA 172 3.36e+01 c.37.1.19 106450 1sdjA 310 3.38e+01 d.21.1.2,d.21.1.2 98807,98808 1oc2A 348 3.39e+01 c.2.1.2 92765 1edt 271 3.42e+01 2ebn c.1.8.5 28993 1j58A 385 3.42e+01 b.82.1.2 71531 1gegA 256 3.43e+01 1ybvA c.2.1.2 29888 1e5mA 416 3.48e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 2bolA 314 3.63e+01 1izoA 417 3.69e+01 a.104.1.1 83851 1ruwA 69 3.79e+01 2g0dA 409 3.79e+01 1o26A 232 3.79e+01 d.207.1.1 86566 1qyaA 307 3.80e+01 d.21.1.2,d.21.1.2 104653,104654 1qfxA 460 3.85e+01 1qfxA c.60.1.2 33994 1jsdA 319 3.87e+01 b.19.1.2 63258 1oo0A 147 3.89e+01 d.232.1.1 87182 1gcqC 70 3.90e+01 1gcpA b.34.2.1 60436 1vqoV 71 3.94e+01 1s95A 333 3.95e+01 d.159.1.3 105375 1hfoA 113 3.99e+01 d.80.1.3 61006 1x1tA 260 4.07e+01 1kopA 223 4.12e+01 2cba b.74.1.1 27966 2cfxA 144 4.17e+01 1yqeA 282 4.22e+01 1edqA 540 4.28e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1pufB 73 4.32e+01 a.4.1.1 95132 1cbf 285 4.34e+01 1cbf c.90.1.1 35587 1bm8 99 4.36e+01 1bm8 d.34.1.1 38528 1gg4A 452 4.37e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1g6hA 257 4.39e+01 1gajA c.37.1.12 60318 1xphA 150 4.43e+01 2f2hA 773 4.45e+01 2ez9A 603 4.47e+01 1qr0A 228 4.50e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1wdyA 285 4.54e+01 1m7vA 363 4.55e+01 d.174.1.1 78748 1brfA 53 4.59e+01 1rb9 g.41.5.1 45236 7taa 478 4.62e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1xouB 95 4.65e+01 1jfbA 404 4.69e+01 a.104.1.1 66624 1nh1A 330 4.70e+01 e.45.1.1 91871 1g26A 31 4.70e+01 1g26A g.3.16.1 44381 1x9pA 523 4.75e+01 1utaA 81 4.79e+01 d.58.52.1 108029 1fm4A 159 4.81e+01 1bv1 d.129.3.1 76186 2dexX 671 4.89e+01 1lriA 98 4.89e+01 a.134.1.1 74223 2bkxA 242 4.94e+01 1js3A 486 4.96e+01 c.67.1.6 67215 1vp4A 425 5.01e+01 1r5tA 142 5.05e+01 c.97.1.1 104812 1vqoX 92 5.08e+01 1v7rA 186 5.11e+01 c.51.4.1 100482 1vmeA 410 5.12e+01 c.23.5.1,d.157.1.3 108893,108894 1cewI 108 5.14e+01 1cewI d.17.1.2 37999 1gqiA 708 5.16e+01 c.1.8.10,d.92.2.2 76279,76280 3bamA 213 5.20e+01 1bam c.52.1.3 33288 1zn8A 180 5.24e+01 1dp4A 435 5.26e+01 1dp4A c.93.1.1 35710 1ihoA 283 5.35e+01 1ihoA c.26.1.4 62390 1d1qA 161 5.36e+01 1dg9A c.44.1.1 32642 1csn 298 5.45e+01 1csn d.144.1.7 41664 1jfuA 186 5.47e+01 c.47.1.10 62940 2aibA 98 5.49e+01 1qh4A 380 5.63e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1v54K 56 5.65e+01 f.23.5.1 100332 1lla 628 5.67e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1zpxA 23 5.68e+01 1g94A 448 5.68e+01 b.71.1.1,c.1.8.1 65169,65170 1qu1A 155 5.71e+01 1qu1A h.3.1.1 45670 3seb 238 5.73e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1q9uA 130 5.76e+01 d.129.7.1 96314 1szhA 161 5.76e+01 a.226.1.1 106157 1ty9A 222 5.78e+01 2aioA 269 5.81e+01 1v5aA 28 5.82e+01 2d1pB 119 5.83e+01 2aa1A 144 5.85e+01 1jfrA 262 5.89e+01 1jfrA c.69.1.16 34724 1rb9 53 5.90e+01 1rb9 g.41.5.1 45214 6rxn 46 5.91e+01 1rb9 g.41.5.1 45222 1epwA 1290 5.98e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1wbhA 214 5.98e+01 1eceA 358 6.02e+01 1eceA c.1.8.3 28813 1pyoA 167 6.05e+01 c.17.1.1 95370 1h2cA 140 6.09e+01 b.31.1.1 83462 2sqcA 631 6.19e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1vg0A 650 6.24e+01 c.3.1.3,d.16.1.6 108596,108597 1lzlA 323 6.28e+01 c.69.1.2 78306 2cdcA 366 6.29e+01 1hc7A 477 6.30e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1ornA 226 6.40e+01 a.96.1.1 87342 1xtqA 177 6.41e+01 1wt9B 123 6.45e+01 2c7pA 327 6.46e+01 1ugpA 203 6.46e+01 d.149.1.1 107831 1qtnB 95 6.46e+01 1pauB 1o7zA 77 6.50e+01 d.9.1.1 86660 2a2mA 258 6.51e+01 1bt3A 345 6.52e+01 1bt3A a.86.1.2 18507 1qmhA 347 6.52e+01 1qmhA c.47.2.1,d.68.2.1 33082,39568 1kwgA 645 6.65e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ni4B 341 6.69e+01 c.36.1.7,c.48.1.2 85729,85730 1qv1A 195 6.70e+01 a.39.1.5 96347 1weyA 104 6.75e+01 1z4rA 168 6.76e+01 2ddfA 257 6.77e+01 1fljA 260 6.80e+01 2cba b.74.1.1 27954 1vkyA 347 6.83e+01 e.53.1.1 108696 1aie 31 6.85e+01 1aie a.53.1.1 17829 1rgzA 363 6.95e+01 e.3.1.1 97457 1smd 496 6.97e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1x9gA 200 7.06e+01 c.33.1.3 109527 1o4vA 183 7.07e+01 c.23.8.1 86628 1o57A 291 7.08e+01 a.4.5.40,c.61.1.1 92483,92484 2fqxA 318 7.13e+01 1ob8A 135 7.19e+01 1rf8B 100 7.19e+01 a.210.1.1 97371 1a3aA 148 7.25e+01 1a3aA d.112.1.1 40917 1twiA 434 7.26e+01 b.49.2.3,c.1.6.1 107399,107400 1p4qA 52 7.31e+01 j.96.1.1 87777 1p1jA 533 7.31e+01 c.2.1.3,d.81.1.3 87687,87688 1w6uA 302 7.35e+01 2axyA 73 7.40e+01 1geeA 261 7.47e+01 c.2.1.2 90509 2culA 232 7.47e+01 1n9eA 787 7.49e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1r9wA 145 7.53e+01 d.89.1.2 97264 1j5pA 253 7.53e+01 d.81.1.3,c.2.1.3 71577,83092 2eu9A 355 7.58e+01 2f8lA 344 7.59e+01 1tqjA 230 7.61e+01 c.1.2.2 107228 1lfdA 87 7.63e+01 1lfdA d.15.1.5 37622 1zboA 210 7.67e+01 1ryaA 160 7.73e+01 d.113.1.5 105122 2ffeA 311 7.81e+01 1th7A 81 7.87e+01 1l8bA 190 7.87e+01 d.86.1.1 73683 1nulA 152 8.03e+01 1nulA c.61.1.1 34011 1vddA 228 8.07e+01 e.49.1.1 108519 1zemA 262 8.16e+01 1c93A 265 8.19e+01 2ebn c.1.8.5 28998 1h1yA 228 8.27e+01 c.1.2.2 76506 1mwmA 320 8.30e+01 c.55.1.1,c.55.1.1 79580,79581 1s2oA 244 8.33e+01 1gd0A 122 8.39e+01 1dptA d.80.1.3 39834 1dkqA 410 8.42e+01 1dklA c.60.1.2 33998 1ynbA 173 8.43e+01 1yh1A 359 8.43e+01 1nffA 260 8.47e+01 c.2.1.2 80457 1va0A 239 8.58e+01 1stzA 338 8.59e+01 a.4.5.51,d.110.2.3 106009,106010 2cwxA 430 8.68e+01 1ur1A 378 8.69e+01 c.1.8.3 99804 2b67A 204 8.71e+01 1yhtA 367 8.73e+01 1jftA 340 8.74e+01 a.35.1.5,c.93.1.1 66652,66653 1jl5A 454 8.75e+01 c.10.2.6 66830 1gmxA 108 8.77e+01 c.46.1.3 65355 3eipA 84 8.84e+01 3eipA d.26.2.1 38434 2b5gA 171 8.84e+01 1ofcX 304 8.96e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1roaA 122 8.98e+01 d.17.1.2 105024 1lki 180 8.99e+01 1lki a.26.1.1 16829