# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1regX 122 1.03e-02 1regX d.58.27.1 39406 8tlnE 316 4.45e-02 1hyt d.92.1.2 59075 1wmaA 276 4.60e-02 1t3gA 159 4.68e-02 1h1dA 221 1.08e-01 c.66.1.1 83452 2bd0A 244 1.10e-01 2ew8A 249 1.98e-01 1ht6A 405 2.32e-01 b.71.1.1,c.1.8.1 83629,83630 1iro 54 3.40e-01 1rb9 g.41.5.1 45223 1x9iA 302 4.09e-01 1bsg 266 4.43e-01 1btl e.3.1.1 42729 1g26A 31 4.80e-01 1g26A g.3.16.1 44381 1m93B 245 4.82e-01 1ey4A 149 5.48e-01 1snc b.40.1.1 24815 1j77A 209 5.54e-01 1j77A a.132.1.2 62674 2f06A 144 5.76e-01 1iv3A 152 6.11e-01 d.79.5.1 76828 1jae 471 6.20e-01 1smd b.71.1.1,c.1.8.1 27773,28760 1n40A 396 6.64e-01 a.104.1.1 79977 1m3sA 186 7.97e-01 c.80.1.3 78573 1f2tA 149 8.56e-01 1f2tA c.37.1.12 32373 1izoA 417 9.17e-01 a.104.1.1 83851 1fe0A 68 1.03e+00 1cc8A d.58.17.1 39345 1lssA 140 1.13e+00 c.2.1.9 74246 1s2oA 244 1.16e+00 1yk4A 52 1.18e+00 1wiwA 290 1.20e+00 2csgA 424 1.21e+00 1ufyA 122 1.23e+00 d.79.1.2 88489 2c36A 285 1.24e+00 1zo0A 126 1.25e+00 1tqhA 247 1.29e+00 c.69.1.29 107225 1rdg 53 1.30e+00 1rb9 g.41.5.1 45221 1zymA 258 1.36e+00 1zymA a.60.10.1,c.8.1.2 18110,30705 1naqA 112 1.47e+00 d.58.5.2 91761 1m8jA 181 1.49e+00 c.26.1.3 84875 2gk4A 232 1.55e+00 1q9uA 130 1.56e+00 d.129.7.1 96314 2cwxA 430 1.60e+00 2ci1A 275 1.65e+00 2f8lA 344 1.78e+00 1ej2A 181 1.81e+00 1f9aA c.26.1.3 59414 1ash 150 1.90e+00 1ash a.1.1.2 15622 1lt8A 406 1.92e+00 c.1.26.1 78186 2d69A 430 1.96e+00 1bd8 156 2.04e+00 1bd8 d.211.1.1 19157 1o8xA 146 2.10e+00 c.47.1.10 86681 2bpqA 373 2.18e+00 2bgkA 278 2.22e+00 2d83A 363 2.24e+00 1brfA 53 2.28e+00 1rb9 g.41.5.1 45236 1udxA 416 2.36e+00 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1u5mA 73 2.41e+00 2f9dA 125 2.47e+00 1qlpA 394 2.59e+00 1ovaA e.1.1.1 42628 2fswA 107 2.61e+00 2end 138 2.72e+00 2end a.18.1.1 16400 1ooeA 236 2.77e+00 c.2.1.2 87196 2erfA 209 2.81e+00 1msk 331 2.86e+00 1msk d.173.1.1 42495 2ca6A 386 2.90e+00 1wdyA 285 2.91e+00 2bepA 159 2.97e+00 1y7bA 542 3.01e+00 1w78A 422 3.04e+00 6rxn 46 3.20e+00 1rb9 g.41.5.1 45222 1pieA 419 3.39e+00 d.14.1.5,d.58.26.7 94706,94707 2b9dA 52 3.46e+00 1edt 271 3.50e+00 2ebn c.1.8.5 28993 1x1tA 260 3.53e+00 1bykA 255 3.98e+00 1bykA c.93.1.1 35706 1uzmA 247 4.01e+00 1z8sA 146 4.07e+00 2f2hA 773 4.09e+00 1xouB 95 4.13e+00 1sc3A 178 4.28e+00 c.17.1.1 105416 2ghrA 302 4.30e+00 1qh8B 519 4.37e+00 1qguB c.92.2.3 35634 1kq6A 141 4.39e+00 d.189.1.1 91020 2d4pA 141 4.52e+00 1kr4A 125 4.52e+00 d.58.5.2 72889 2aq5A 402 4.66e+00 1xqaA 113 4.75e+00 1f0lA 535 4.80e+00 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1k87A 669 4.87e+00 a.176.1.1,c.1.23.2 77286,77287 1xdnA 277 4.88e+00 1rvkA 382 4.88e+00 c.1.11.2,d.54.1.1 97928,97929 1h1yA 228 5.19e+00 c.1.2.2 76506 1y51A 88 5.29e+00 2fb0A 94 5.38e+00 1mrzA 293 5.43e+00 b.43.5.1,c.26.1.3 91452,91453 1yqeA 282 5.44e+00 1aie 31 5.52e+00 1aie a.53.1.1 17829 1stzA 338 5.67e+00 a.4.5.51,d.110.2.3 106009,106010 1v76A 96 5.82e+00 1jysA 242 5.82e+00 c.56.2.1 77216 1kafA 108 5.82e+00 d.199.1.1 68372 2ez9A 603 5.84e+00 1gntA 553 5.87e+00 e.26.1.1 70290 1ukuA 102 5.88e+00 d.58.5.2 99533 1nzaA 103 5.96e+00 d.58.5.2 86444 1t5iA 172 6.34e+00 c.37.1.19 106450 1muwA 386 6.35e+00 c.1.15.3 79495 1uanA 227 6.48e+00 c.134.1.1 99135 1k8kB 394 6.50e+00 c.55.1.1 68307 1ornA 226 6.51e+00 a.96.1.1 87342 1a8d 452 6.66e+00 1a8d b.29.1.6,b.42.4.2 24262,25607 2c30A 321 6.81e+00 1sv0C 82 6.99e+00 a.60.1.1 106037 1xodA 118 7.00e+00 1vjoA 393 7.32e+00 c.67.1.3 100827 1oo0A 147 7.44e+00 d.232.1.1 87182 1g61A 228 7.68e+00 1g61A d.126.1.1 41126 1s7zA 117 7.76e+00 a.159.3.1 98715 2ge3A 170 7.82e+00 1ud9A 245 7.84e+00 d.131.1.2,d.131.1.2 107768,107769 1xaoA 121 7.92e+00 1ne9A 335 8.08e+00 d.108.1.4,d.108.1.4 91839,91840 1vgmA 378 8.14e+00 1wcwA 261 8.17e+00 1pgvA 197 8.23e+00 c.10.1.1 88073 1yxmA 303 8.23e+00 1tr9A 341 8.47e+00 2bh1A 250 8.47e+00 1js3A 486 8.54e+00 c.67.1.6 67215 1ro7A 259 8.88e+00 c.130.1.1 97667 1oz9A 150 8.94e+00 d.92.1.15 93808 1c0pA 363 8.95e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1ijyA 130 9.15e+00 1ijxA a.141.1.1 62517 1rb9 53 9.19e+00 1rb9 g.41.5.1 45214 1o26A 232 9.20e+00 d.207.1.1 86566 1goiA 499 9.38e+00 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2fliA 220 9.54e+00 1vjqA 79 9.54e+00 k.43.1.1 100830 1hx0A 496 9.70e+00 b.71.1.1,c.1.8.1 61346,61347 2fjbA 643 9.72e+00 1twiA 434 9.78e+00 b.49.2.3,c.1.6.1 107399,107400 1geeA 261 1.00e+01 c.2.1.2 90509 1wd7A 261 1.00e+01 2f0aA 98 1.01e+01 1i5gA 144 1.05e+01 1ewxA c.47.1.10 61784 1xw3A 110 1.06e+01 1evlA 401 1.06e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1ia8A 289 1.07e+01 1ia8A d.144.1.7 62112 1ka8A 100 1.11e+01 a.4.5.20 72241 4ubpA 101 1.11e+01 1ubpA d.8.1.1 37352 1roaA 122 1.12e+01 d.17.1.2 105024 2c1xA 456 1.13e+01 1jflA 228 1.15e+01 c.78.2.1,c.78.2.1 71656,71657 1m4iA 181 1.18e+01 d.108.1.1 74457 1fukA 165 1.19e+01 1fukA c.37.1.19 32409 1t71A 281 1.24e+01 1e4yA 214 1.24e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1wdtA 665 1.25e+01 1dfmA 223 1.25e+01 1d2iA c.52.1.5 33295 1j1iA 296 1.28e+01 c.69.1.10 83977 2fqxA 318 1.28e+01 2bryA 497 1.29e+01 1q0rA 298 1.30e+01 c.69.1.28 95508 1q7lA 198 1.30e+01 c.56.5.4 96044 1zvkA 358 1.32e+01 1k47A 337 1.33e+01 d.14.1.5,d.58.26.4 72040,72041 1l0wA 580 1.34e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1kamA 194 1.35e+01 c.26.1.3 72254 1unlD 208 1.36e+01 1rgxA 114 1.36e+01 g.77.1.1 104932 2furA 209 1.37e+01 1r1hA 696 1.38e+01 d.92.1.4 104756 1iruK 201 1.39e+01 d.153.1.4 71362 1kveB 77 1.39e+01 1kveB 2fymA 431 1.39e+01 1ur1A 378 1.40e+01 c.1.8.3 99804 1ctf 74 1.41e+01 1ctf d.45.1.1 38759 1w5fA 353 1.41e+01 1ywzA 175 1.44e+01 1wekA 217 1.45e+01 1p4xA 250 1.46e+01 a.4.5.28,a.4.5.28 87784,87785 1afwA 393 1.46e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1jnrA 643 1.49e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1v5mA 136 1.49e+01 b.55.1.1 108379 1sxvA 172 1.49e+01 1o7zA 77 1.50e+01 d.9.1.1 86660 2g2dA 193 1.51e+01 1ihoA 283 1.51e+01 1ihoA c.26.1.4 62390 1in0A 163 1.52e+01 d.58.49.1,d.58.49.1 83694,83695 1t07A 94 1.54e+01 d.279.1.1 106196 2fcjA 119 1.55e+01 1xg5A 279 1.57e+01 1buoA 121 1.59e+01 1buoA d.42.1.1 38631 1du3A 130 1.59e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1vqoX 92 1.60e+01 2bycA 137 1.60e+01 1le6A 123 1.65e+01 a.133.1.2 73862 1vmeA 410 1.65e+01 c.23.5.1,d.157.1.3 108893,108894 1dbfA 127 1.65e+01 2chsA d.79.1.2 39761 1s5aA 150 1.67e+01 d.17.4.10 98525 1h4vB 421 1.69e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1y7lA 316 1.70e+01 1gqiA 708 1.70e+01 c.1.8.10,d.92.2.2 76279,76280 7taa 478 1.70e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1ob8A 135 1.71e+01 1no7A 604 1.74e+01 e.48.1.1 92016 1t7rA 269 1.74e+01 a.123.1.1 106635 1uptB 60 1.77e+01 a.193.1.1 99768 1ofcX 304 1.78e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2f5xA 312 1.79e+01 1ebfA 358 1.79e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1k7kA 221 1.80e+01 c.51.4.1 72104 2fnjC 96 1.81e+01 2b9eA 303 1.82e+01 1z7xW 461 1.82e+01 1wwzA 159 1.83e+01 1vr6A 350 1.90e+01 2exnA 136 1.90e+01 1e4cP 215 1.93e+01 2fua c.74.1.1 34969 1yzsA 121 1.93e+01 1wyuA 438 1.94e+01 1ospO 257 1.94e+01 1ospO b.76.1.1 27971 2fckA 181 1.95e+01 1f2vA 219 1.96e+01 1f2vA c.23.17.1 59627 1lzlA 323 1.97e+01 c.69.1.2 78306 1c93A 265 1.97e+01 2ebn c.1.8.5 28998 1w53A 84 1.98e+01 a.186.1.2 109175 1kmvA 186 1.99e+01 c.71.1.1 72757 1edqA 540 2.02e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1xmxA 385 2.03e+01 2g2cA 167 2.03e+01 1n4qB 377 2.06e+01 a.102.4.3 91636 1eokA 290 2.08e+01 1eokA c.1.8.5 28991 1vmaA 306 2.08e+01 a.24.13.1,c.37.1.10 108887,108888 1lfdA 87 2.09e+01 1lfdA d.15.1.5 37622 1gdhA 320 2.09e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1lmzA 187 2.13e+01 a.96.1.4 74037 1f00I 282 2.16e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1gtkA 313 2.17e+01 c.94.1.1,d.50.2.1 76346,76347 1v7rA 186 2.18e+01 c.51.4.1 100482 1sk4A 163 2.20e+01 d.118.1.1 105664 1x89A 178 2.20e+01 1mpgA 282 2.21e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1n13A 52 2.22e+01 d.155.1.2 85248 1g6hA 257 2.23e+01 1gajA c.37.1.12 60318 1gegA 256 2.25e+01 1ybvA c.2.1.2 29888 1b5pA 385 2.26e+01 c.67.1.1 90403 1ew4A 106 2.26e+01 1ew4A d.82.2.1 40023 1zmdA 474 2.29e+01 1w2wB 191 2.30e+01 1tf0B 53 2.31e+01 a.8.1.2 106825 2fe5A 94 2.34e+01 1v5aA 28 2.35e+01 1odkA 235 2.38e+01 c.56.2.1 86863 1gxrA 337 2.39e+01 b.69.4.1 70722 1jihA 531 2.39e+01 d.240.1.1,e.8.1.7 90374,90375 1vecA 206 2.39e+01 c.37.1.19 100575 1s1fA 406 2.39e+01 1q7zA 566 2.39e+01 c.1.21.2,c.1.26.1 96090,96091 1cg2A 393 2.40e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1uwvA 433 2.41e+01 b.40.4.12,c.66.1.40 100128,100129 1uc7A 125 2.44e+01 c.47.1.1 99163 1ejdA 419 2.45e+01 1uae d.68.2.2 39576 1j5uA 136 2.56e+01 d.208.1.1 71584 1mtpA 323 2.56e+01 e.1.1.1 85107 1fjnA 39 2.56e+01 1fjnA g.3.7.3 44171 1na3A 91 2.58e+01 k.38.1.1 85481 1hc7A 477 2.59e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1axh 37 2.60e+01 1axh g.3.6.2 44109 1zn8A 180 2.60e+01 1gycA 499 2.61e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2gkpA 167 2.63e+01 1f8vA 355 2.64e+01 2bbvA b.121.4.4 23329 1gqzA 274 2.65e+01 d.21.1.1,d.21.1.1 83311,83312 1n1fA 159 2.66e+01 a.26.1.3 79803 1tbuA 118 2.66e+01 2cdcA 366 2.67e+01 1m4vA 204 2.68e+01 b.40.2.2,d.15.6.1 74459,74460 1lmb3 92 2.69e+01 1lmb3 1fecA 490 2.70e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1fp3A 402 2.70e+01 1fp3A a.102.1.3 18842 1ofuX 119 2.72e+01 c.37.1.22 86976 1vjeA 166 2.77e+01 d.185.1.2 100807 1i8nA 126 2.77e+01 1i8nA g.10.1.2 61976 1zemA 262 2.77e+01 1ub3A 220 2.78e+01 c.1.10.1 88395 1xhkA 187 2.79e+01 1gqnA 252 2.80e+01 c.1.10.1 90514 1zh2A 121 2.80e+01 1cbf 285 2.84e+01 1cbf c.90.1.1 35587 3bamA 213 2.84e+01 1bam c.52.1.3 33288 1mxeE 25 2.86e+01 1i0dA 332 2.86e+01 1pscA c.1.9.3 61487 1cjcA 460 2.88e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1wbhA 214 2.88e+01 1qv1A 195 2.88e+01 a.39.1.5 96347 1vc1A 110 2.88e+01 c.13.2.1 108493 1rq2A 382 2.90e+01 c.32.1.1,d.79.2.1 105048,105049 1pswA 348 2.92e+01 c.87.1.7 88287 1svvA 359 2.95e+01 c.67.1.1 106054 1vsrA 136 2.97e+01 1vsrA c.52.1.15 33332 1zw0A 66 2.97e+01 1z2lA 423 2.97e+01 2irfG 113 2.98e+01 2irfG a.4.5.23 16185 2bj7A 138 2.99e+01 2c07A 285 3.00e+01 1ys7A 233 3.02e+01 2gkeA 274 3.06e+01 1r6xA 395 3.08e+01 b.122.1.3,c.26.1.5 97167,97168 1s2xA 206 3.08e+01 a.47.3.1 105229 1z2wA 192 3.11e+01 1qzzA 374 3.12e+01 a.4.5.29,c.66.1.12 96719,96720 1o57A 291 3.13e+01 a.4.5.40,c.61.1.1 92483,92484 1mvoA 136 3.13e+01 c.23.1.1 79513 2g03A 194 3.15e+01 1n2eA 300 3.16e+01 c.26.1.4 85268 2b8nA 429 3.17e+01 1n13B 113 3.17e+01 1rypI 222 3.18e+01 d.153.1.4 41877 1rqpA 299 3.20e+01 b.141.1.1,c.132.1.1 97754,97755 1fexA 59 3.22e+01 a.4.1.3 59803 1n7hA 381 3.23e+01 c.2.1.2 80250 1fp1D 372 3.25e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1ucrA 78 3.30e+01 a.4.5.45 99188 1fgkA 310 3.31e+01 1fgkA d.144.1.7 41693 2gw6A 123 3.32e+01 1sfxA 109 3.32e+01 a.4.5.50 105505 1j2jB 45 3.33e+01 a.7.8.1 84017 2chnA 716 3.33e+01 2aplA 157 3.34e+01 1tqzA 133 3.34e+01 2arhA 203 3.34e+01 2cspA 130 3.39e+01 1qd1A 325 3.42e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1rewA 114 3.42e+01 g.17.1.2 97334 1pea 385 3.42e+01 1pea c.93.1.1 35662 1vqoQ 96 3.43e+01 1ynbA 173 3.44e+01 1qopB 396 3.44e+01 2tysB c.79.1.1 35270 1vpdA 299 3.45e+01 1ov2A 99 3.46e+01 a.13.1.1 93580 1wnaA 131 3.47e+01 1o4vA 183 3.47e+01 c.23.8.1 86628 2azeC 46 3.48e+01 1ohzB 60 3.48e+01 a.139.1.1 93044 1j8mF 297 3.51e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1t77A 414 3.54e+01 1yuzA 202 3.54e+01 1gk7A 39 3.54e+01 h.1.20.1 70212 1iseA 185 3.55e+01 d.67.3.1 90691 1i27A 73 3.56e+01 1i27A a.4.5.30 61555 1i8kA 107 3.56e+01 b.1.1.1 71130 1aep 161 3.56e+01 1aep a.63.1.1 18139 1pyoA 167 3.57e+01 c.17.1.1 95370 1w6uA 302 3.60e+01 1p1jA 533 3.62e+01 c.2.1.3,d.81.1.3 87687,87688 1sheA 103 3.64e+01 d.274.1.1 105551 1q8fA 313 3.67e+01 c.70.1.1 96203 1rf6A 427 3.69e+01 d.68.2.2 97366 1f8mA 429 3.71e+01 1dquA c.1.12.7 29315 1d2fA 390 3.72e+01 1d2fA c.67.1.3 34411 2ae2A 260 3.74e+01 1bdb c.2.1.2 29945 1flcA 432 3.75e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1tt7A 330 3.76e+01 1weyA 104 3.76e+01 1shfA 59 3.76e+01 1bbzA b.34.2.1 24462 1e5mA 416 3.78e+01 1dd8A 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