# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 9.11e-02 1fe0A 68 1.80e-01 1cc8A d.58.17.1 39345 1iro 54 2.75e-01 1rb9 g.41.5.1 45223 1wiwA 290 2.84e-01 1e4yA 214 3.53e-01 1zin c.37.1.1,g.41.2.1 31901,45181 1wdyA 285 3.62e-01 1m93B 245 6.21e-01 1z8sA 146 6.23e-01 1wmaA 276 8.42e-01 1s9uA 207 8.50e-01 a.184.1.1 105390 1yk4A 52 8.86e-01 1t77A 414 9.18e-01 1muwA 386 9.24e-01 c.1.15.3 79495 1y7bA 542 9.50e-01 1x9iA 302 1.16e+00 1brfA 53 1.26e+00 1rb9 g.41.5.1 45236 1u5mA 73 1.26e+00 1uuqA 440 1.42e+00 c.1.8.3 100015 1udxA 416 1.51e+00 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1rdg 53 1.61e+00 1rb9 g.41.5.1 45221 2ew8A 249 1.71e+00 1v3wA 173 1.75e+00 b.81.1.5 100291 1ash 150 1.87e+00 1ash a.1.1.2 15622 2exnA 136 2.20e+00 2csgA 424 2.32e+00 1tqhA 247 2.45e+00 c.69.1.29 107225 1ofcX 304 2.55e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1f0lA 535 2.65e+00 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2d4pA 141 3.01e+00 1jihA 531 3.08e+00 d.240.1.1,e.8.1.7 90374,90375 1vqrA 297 3.48e+00 6rxn 46 3.50e+00 1rb9 g.41.5.1 45222 1skz 119 3.52e+00 1skz g.3.15.1,g.3.15.1 44366,44367 1s12A 94 3.89e+00 1fcqA 350 4.01e+00 c.1.8.9 65006 1g26A 31 4.05e+00 1g26A g.3.16.1 44381 1td6A 306 4.31e+00 2bepA 159 4.61e+00 2cwxA 430 4.75e+00 2g03A 194 4.79e+00 1qoyA 318 5.10e+00 1qoyA h.4.4.1 45788 1s2oA 244 5.76e+00 2bd0A 244 5.80e+00 2cbzA 237 5.96e+00 1ywzA 175 6.11e+00 2cq2A 114 6.33e+00 1rb9 53 6.37e+00 1rb9 g.41.5.1 45214 1nzaA 103 6.43e+00 d.58.5.2 86444 2d69A 430 7.14e+00 2bl8A 103 7.37e+00 1n40A 396 7.47e+00 a.104.1.1 79977 1wcwA 261 7.60e+00 2azpA 318 7.82e+00 3bamA 213 7.98e+00 1bam c.52.1.3 33288 2b9dA 52 8.27e+00 1iseA 185 8.47e+00 d.67.3.1 90691 1i0lA 221 8.50e+00 c.61.1.1 71096 1zin 217 8.96e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1zpwX 90 9.06e+00 2b6cA 220 9.56e+00 1ufzA 83 1.02e+01 a.5.9.1 107821 2bycA 137 1.04e+01 1kq6A 141 1.05e+01 d.189.1.1 91020 1wd7A 261 1.06e+01 2aq5A 402 1.09e+01 2cspA 130 1.11e+01 1irdB 146 1.15e+01 a.1.1.2 66287 1v0wA 506 1.16e+01 d.136.1.2,d.136.1.2 108220,108221 1t8kA 77 1.17e+01 a.28.1.1 106666 1uc7A 125 1.17e+01 c.47.1.1 99163 1kqfA 1015 1.19e+01 b.52.2.2,c.81.1.1 72871,72872 1y80A 210 1.19e+01 1xodA 118 1.21e+01 1k8kB 394 1.28e+01 c.55.1.1 68307 1u69A 163 1.40e+01 d.32.1.7 107699 1aky 221 1.46e+01 1zin c.37.1.1,g.41.2.1 31896,45197 2cw5A 255 1.49e+01 1t5bA 201 1.50e+01 c.23.5.3 106433 1i9zA 347 1.54e+01 1i9yA d.151.1.2 62102 1ik9A 213 1.56e+01 b.59.1.1,h.1.11.1 66176,66177 1aep 161 1.56e+01 1aep a.63.1.1 18139 2d83A 363 1.57e+01 1e5dA 402 1.67e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1vecA 206 1.69e+01 c.37.1.19 100575 1oh4A 179 1.72e+01 b.18.1.18 92978 1v76A 96 1.74e+01 1u7iA 136 1.77e+01 d.32.1.7 107724 1msk 331 1.77e+01 1msk d.173.1.1 42495 1o8xA 146 1.88e+01 c.47.1.10 86681 1vlaA 150 1.89e+01 d.227.1.2 108735 2f06A 144 1.90e+01 2etjA 250 2.01e+01 1odkA 235 2.04e+01 c.56.2.1 86863 2aa1A 144 2.09e+01 1zn8A 180 2.09e+01 1utaA 81 2.09e+01 d.58.52.1 108029 1vf8A 377 2.18e+01 1vmaA 306 2.25e+01 a.24.13.1,c.37.1.10 108887,108888 1yj7A 171 2.26e+01 1tc1A 220 2.37e+01 1tc1A c.61.1.1 34083 1fukA 165 2.39e+01 1fukA c.37.1.19 32409 1vqoQ 96 2.41e+01 1sazA 381 2.41e+01 2b81A 323 2.47e+01 1ukfA 188 2.48e+01 d.3.1.10 99488 1uanA 227 2.61e+01 c.134.1.1 99135 1ywnA 316 2.64e+01 1qi9A 556 2.71e+01 1qhbA a.111.1.2 19053 1t7rA 269 2.79e+01 a.123.1.1 106635 1hc7A 477 2.80e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1scjB 71 2.83e+01 1scjB d.58.3.2 39069 1pa7A 130 2.85e+01 a.40.1.1 94410 1xvqA 175 2.86e+01 1j2jB 45 2.94e+01 a.7.8.1 84017 1pguA 615 2.99e+01 b.69.4.1,b.69.4.1 88069,88070 1xg5A 279 3.04e+01 1evhA 112 3.08e+01 1evhA b.55.1.4 26997 1g1cA 99 3.10e+01 b.1.1.4 65078 1s7zA 117 3.10e+01 a.159.3.1 98715 1qreA 247 3.13e+01 1qreA b.81.1.5 28066 2fswA 107 3.17e+01 1hfoA 113 3.17e+01 d.80.1.3 61006 1bm8 99 3.31e+01 1bm8 d.34.1.1 38528 1j77A 209 3.33e+01 1j77A a.132.1.2 62674 1rfkA 98 3.33e+01 1x79A 98 3.34e+01 1oz9A 150 3.47e+01 d.92.1.15 93808 1k92A 455 3.48e+01 c.26.2.1,d.210.1.1 68325,68326 2cdnA 201 3.58e+01 1jae 471 3.60e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1nrzA 164 3.63e+01 c.38.1.1 86131 1ql3A 99 3.70e+01 1ycc a.3.1.1 15822 2bgkA 278 3.77e+01 1l0wA 580 3.83e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1q9uA 130 3.89e+01 d.129.7.1 96314 1v38A 78 4.09e+01 a.60.1.2 100280 1v5mA 136 4.09e+01 b.55.1.1 108379 2napA 723 4.10e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1yuzA 202 4.13e+01 1sgmA 191 4.14e+01 a.4.1.9,a.121.1.1 105537,105538 1zedA 484 4.15e+01 3sil 379 4.16e+01 3sil b.68.1.1 27542 1dbwA 126 4.24e+01 1dbwA c.23.1.1 31095 1fjnA 39 4.27e+01 1fjnA g.3.7.3 44171 1ukuA 102 4.33e+01 d.58.5.2 99533 2gkeA 274 4.36e+01 1z6oM 191 4.38e+01 1h5rA 293 4.41e+01 c.68.1.6 65623 2cs3A 93 4.44e+01 1mwwA 128 4.52e+01 d.80.1.4 91483 1kcnA 22 4.54e+01 k.30.1.2 72301 1w6kA 732 4.55e+01 1k0mA 241 4.66e+01 a.45.1.1,c.47.1.5 67949,67950 1yp2A 451 4.69e+01 1xqaA 113 4.71e+01 1rh9A 373 4.71e+01 1kafA 108 4.76e+01 d.199.1.1 68372 1t71A 281 4.79e+01 1txkA 498 4.83e+01 b.1.18.2,b.30.5.9 107425,107426 2bi7A 384 4.84e+01 1pvtA 238 4.86e+01 c.74.1.1 95189 2erfA 209 4.94e+01 1ykiA 217 4.95e+01 2cobA 70 5.01e+01 1fgkA 310 5.06e+01 1fgkA d.144.1.7 41693 1ayoA 130 5.09e+01 1ayoA b.2.4.1 22431 1yxmA 303 5.14e+01 1upkA 341 5.20e+01 a.118.1.15 99758 1gdhA 320 5.22e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 2f0aA 98 5.28e+01 1weyA 104 5.29e+01 1jflA 228 5.31e+01 c.78.2.1,c.78.2.1 71656,71657 1gxrA 337 5.35e+01 b.69.4.1 70722 1l1eA 287 5.45e+01 c.66.1.18 73454 1b12A 248 5.48e+01 1b12A b.87.1.2 28388 2apxA 112 5.58e+01 1gcvB 136 5.59e+01 1cg5B a.1.1.2 15589 1aihA 170 5.72e+01 1aihA d.163.1.1 42149 1m7vA 363 5.73e+01 d.174.1.1 78748 2cfuA 658 5.74e+01 1r5rA 119 5.79e+01 a.39.2.1 97104 1ucpA 91 5.85e+01 a.77.1.5 99186 1yzxA 226 5.89e+01 1ugpA 203 5.89e+01 d.149.1.1 107831 1zo0A 126 5.94e+01 1vjqA 79 5.97e+01 k.43.1.1 100830 1n13B 113 6.08e+01 1m65A 245 6.10e+01 c.6.3.1 84847 1eteA 134 6.12e+01 1eteA a.26.1.2 16869 1f00I 282 6.21e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2f4eA 180 6.22e+01 1qwgA 251 6.24e+01 c.1.27.1 96473 1idpA 172 6.30e+01 d.17.4.1 83685 1rgxA 114 6.38e+01 g.77.1.1 104932 2d5xB 146 6.42e+01 2ci1A 275 6.55e+01 16vpA 366 6.59e+01 16vpA d.180.1.1 42601 1r9hA 135 6.66e+01 d.26.1.1 97260 1lt8A 406 6.68e+01 c.1.26.1 78186 1s5aA 150 6.89e+01 d.17.4.10 98525 1sk4A 163 6.97e+01 d.118.1.1 105664 1axh 37 6.98e+01 1axh g.3.6.2 44109 1tf0B 53 7.02e+01 a.8.1.2 106825 1nykA 165 7.08e+01 b.33.1.1 86408 2bbdA 350 7.12e+01 1zw8A 64 7.21e+01 1i3dA 146 7.21e+01 a.1.1.2 61587 1cjcA 460 7.22e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1z4rA 168 7.22e+01 1uzmA 247 7.22e+01 1bhdA 118 7.27e+01 1bkrA a.40.1.1 17398 1ufyA 122 7.27e+01 d.79.1.2 88489 1cy5A 97 7.29e+01 1cy5A a.77.1.3 18430 2g0dA 409 7.35e+01 2bc4A 211 7.54e+01 2gujA 155 7.55e+01 1wmuB 146 7.61e+01 a.1.1.2 109417 2fliA 220 7.62e+01 1vr7A 142 7.63e+01 2etxA 209 7.65e+01 1mof 55 7.73e+01 1mof h.3.2.1 46324 2f8lA 344 7.79e+01 1uvjA 664 7.81e+01 e.8.1.6 100045 1pb1A 416 7.82e+01 c.77.1.1 88014 1zhaA 267 7.84e+01 1kr4A 125 7.90e+01 d.58.5.2 72889 1inp 400 7.90e+01 1inp e.7.1.1 42972 1szhA 161 7.94e+01 a.226.1.1 106157 1vqoV 71 8.00e+01 1pba 81 8.01e+01 1pytA d.58.3.1 39067 1pe1A 267 8.01e+01 c.1.10.4 94591 1t46A 313 8.07e+01 d.144.1.7 106397 1v5aA 28 8.07e+01 1du3A 130 8.07e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1zdrA 164 8.15e+01 1fmeA 28 8.17e+01 k.12.1.1 59878 1pufB 73 8.20e+01 a.4.1.1 95132 1lmb3 92 8.23e+01 1lmb3 2fb0A 94 8.23e+01 1fx2A 235 8.32e+01 1fx2A d.58.29.1 39430 1gqzA 274 8.35e+01 d.21.1.1,d.21.1.1 83311,83312 1yr1A 119 8.35e+01 1r1hA 696 8.37e+01 d.92.1.4 104756 1vjyA 303 8.40e+01 d.144.1.7 108633 1tr8A 102 8.48e+01 3dfr 162 8.48e+01 3dfr c.71.1.1 34880 1sxvA 172 8.61e+01 1p5tA 127 8.65e+01 b.55.1.2 94148 1dmhA 311 8.66e+01 1dmhA b.3.6.1 22633 1ht6A 405 8.66e+01 b.71.1.1,c.1.8.1 83629,83630 1g3kA 174 8.69e+01 1nedA d.153.1.4 41989 1xouB 95 8.82e+01 1i5gA 144 8.88e+01 1ewxA c.47.1.10 61784 1pzxA 289 8.92e+01 c.119.1.1 95484 1z7xW 461 8.92e+01