# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 3.93e-02 1wmaA 276 8.47e-02 2ci1A 275 9.68e-02 2ew8A 249 2.01e-01 1ey4A 149 4.15e-01 1snc b.40.1.1 24815 1tqhA 247 4.70e-01 c.69.1.29 107225 1t77A 414 5.59e-01 1regX 122 6.32e-01 1regX d.58.27.1 39406 2b9dA 52 7.93e-01 1m93B 245 8.90e-01 8tlnE 316 1.01e+00 1hyt d.92.1.2 59075 1f2tA 149 1.33e+00 1f2tA c.37.1.12 32373 2bd0A 244 1.33e+00 1xaoA 121 1.49e+00 1zo0A 126 1.60e+00 1oz9A 150 1.65e+00 d.92.1.15 93808 1jae 471 2.04e+00 1smd b.71.1.1,c.1.8.1 27773,28760 1bebA 162 2.41e+00 1bebA b.60.1.1 27115 1g26A 31 2.46e+00 1g26A g.3.16.1 44381 1kq6A 141 2.93e+00 d.189.1.1 91020 1udxA 416 2.96e+00 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1y7bA 542 3.25e+00 1fe0A 68 3.31e+00 1cc8A d.58.17.1 39345 1xg5A 279 3.54e+00 1cjcA 460 3.66e+00 1cjcA c.3.1.1,c.4.1.1 30319,30604 1t71A 281 3.70e+00 2eifA 136 4.07e+00 1bkb b.34.5.2,b.40.4.5 24607,25339 1wiwA 290 4.39e+00 1iro 54 4.49e+00 1rb9 g.41.5.1 45223 7taa 478 4.85e+00 7taa b.71.1.1,c.1.8.1 27778,28765 1e4yA 214 5.06e+00 1zin c.37.1.1,g.41.2.1 31901,45181 2csgA 424 5.56e+00 2d4pA 141 5.88e+00 2erfA 209 6.12e+00 2bwnA 401 6.53e+00 1qlpA 394 7.03e+00 1ovaA e.1.1.1 42628 1s2oA 244 7.12e+00 1u5mA 73 7.60e+00 1ht6A 405 7.70e+00 b.71.1.1,c.1.8.1 83629,83630 1f8vA 355 7.91e+00 2bbvA b.121.4.4 23329 3bamA 213 8.37e+00 1bam c.52.1.3 33288 2bgkA 278 8.44e+00 2d83A 363 8.46e+00 1gntA 553 9.12e+00 e.26.1.1 70290 2ca6A 386 9.23e+00 1x9iA 302 9.45e+00 2c36A 285 9.55e+00 2cwxA 430 1.01e+01 1yj7A 171 1.02e+01 1mrzA 293 1.03e+01 b.43.5.1,c.26.1.3 91452,91453 1vcvA 226 1.10e+01 1g61A 228 1.13e+01 1g61A d.126.1.1 41126 1n40A 396 1.16e+01 a.104.1.1 79977 1iseA 185 1.17e+01 d.67.3.1 90691 1ocsA 162 1.18e+01 d.189.1.1 92776 2f9dA 125 1.32e+01 1muwA 386 1.34e+01 c.1.15.3 79495 2a1iA 146 1.34e+01 1w5fA 353 1.39e+01 1uanA 227 1.40e+01 c.134.1.1 99135 1edqA 540 1.43e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1k8kB 394 1.46e+01 c.55.1.1 68307 2d69A 430 1.47e+01 1izoA 417 1.48e+01 a.104.1.1 83851 1h1dA 221 1.50e+01 c.66.1.1 83452 2g03A 194 1.54e+01 1z57A 339 1.59e+01 2c07A 285 1.62e+01 1jihA 531 1.63e+01 d.240.1.1,e.8.1.7 90374,90375 1z2wA 192 1.66e+01 1utaA 81 1.71e+01 d.58.52.1 108029 1a8d 452 1.72e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1yk4A 52 1.72e+01 1sc3A 178 1.75e+01 c.17.1.1 105416 1j5pA 253 1.75e+01 d.81.1.3,c.2.1.3 71577,83092 1bm8 99 1.76e+01 1bm8 d.34.1.1 38528 1q9uA 130 1.77e+01 d.129.7.1 96314 2gzqA 200 1.84e+01 2f0aA 98 1.89e+01 1ud9A 245 1.92e+01 d.131.1.2,d.131.1.2 107768,107769 1s5aA 150 1.93e+01 d.17.4.10 98525 1m3sA 186 1.94e+01 c.80.1.3 78573 1m4vA 204 1.95e+01 b.40.2.2,d.15.6.1 74459,74460 1ash 150 2.01e+01 1ash a.1.1.2 15622 1yljA 263 2.03e+01 1gmxA 108 2.04e+01 c.46.1.3 65355 1vjqA 79 2.21e+01 k.43.1.1 100830 1uzmA 247 2.22e+01 1v65A 64 2.24e+01 a.212.1.1 108393 2f2hA 773 2.24e+01 1knvA 293 2.24e+01 c.52.1.7 68707 1tqzA 133 2.25e+01 2fb0A 94 2.26e+01 1brfA 53 2.29e+01 1rb9 g.41.5.1 45236 1gxrA 337 2.29e+01 b.69.4.1 70722 1jixA 351 2.30e+01 1c3jA c.87.1.1 63081 6rxn 46 2.30e+01 1rb9 g.41.5.1 45222 2aq5A 402 2.30e+01 2azeC 46 2.34e+01 1ja9A 274 2.35e+01 c.2.1.2 62817 1i3zA 103 2.36e+01 d.93.1.1 83667 2bepA 159 2.39e+01 1fcyA 236 2.40e+01 2lbd a.123.1.1 19282 2f06A 144 2.41e+01 1wnyA 186 2.48e+01 1zymA 258 2.50e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1eokA 290 2.53e+01 1eokA c.1.8.5 28991 1udzA 182 2.57e+01 b.51.1.1 99239 1wcwA 261 2.60e+01 1bdb 277 2.61e+01 1bdb c.2.1.2 29874 1l0wA 580 2.62e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1rdg 53 2.64e+01 1rb9 g.41.5.1 45221 1unlD 208 2.67e+01 1ry9A 145 2.67e+01 d.198.1.1 98094 1wd7A 261 2.68e+01 2cspA 130 2.68e+01 1skz 119 2.72e+01 1skz g.3.15.1,g.3.15.1 44366,44367 1ufyA 122 2.72e+01 d.79.1.2 88489 12asA 330 2.75e+01 12asA d.104.1.1 40783 1zwyA 185 2.77e+01 1xi1A 575 2.93e+01 1f2vA 219 2.97e+01 1f2vA c.23.17.1 59627 1wdtA 665 3.01e+01 1v3wA 173 3.01e+01 b.81.1.5 100291 1jl5A 454 3.03e+01 c.10.2.6 66830 1kllA 130 3.03e+01 d.32.1.2 72720 1n7hA 381 3.07e+01 c.2.1.2 80250 1nzaA 103 3.08e+01 d.58.5.2 86444 1kr4A 125 3.09e+01 d.58.5.2 72889 1s7kA 182 3.09e+01 1lriA 98 3.11e+01 a.134.1.1 74223 1h1yA 228 3.16e+01 c.1.2.2 76506 1pufB 73 3.17e+01 a.4.1.1 95132 2fliA 220 3.19e+01 2sns 149 3.20e+01 1snc b.40.1.1 24860 1o57A 291 3.23e+01 a.4.5.40,c.61.1.1 92483,92484 1ve3A 227 3.30e+01 2end 138 3.31e+01 2end a.18.1.1 16400 1ywzA 175 3.38e+01 1vjeA 166 3.40e+01 d.185.1.2 100807 1x1tA 260 3.41e+01 1gu2A 124 3.44e+01 a.3.1.1 76348 1v7rA 186 3.46e+01 c.51.4.1 100482 1n4qB 377 3.46e+01 a.102.4.3 91636 1rq2A 382 3.54e+01 c.32.1.1,d.79.2.1 105048,105049 1yqeA 282 3.60e+01 1wdyA 285 3.60e+01 1n6jG 35 3.61e+01 1gycA 499 3.67e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1w78A 422 3.70e+01 1j2jB 45 3.81e+01 a.7.8.1 84017 2cs3A 93 3.83e+01 2fa8A 105 3.89e+01 1vqoV 71 4.07e+01 1rypI 222 4.09e+01 d.153.1.4 41877 1j77A 209 4.11e+01 1j77A a.132.1.2 62674 1y7lA 316 4.11e+01 1iv3A 152 4.11e+01 d.79.5.1 76828 2arhA 203 4.12e+01 1ofcX 304 4.12e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1rf6A 427 4.15e+01 d.68.2.2 97366 1shwB 181 4.15e+01 b.18.1.4 105563 1xodA 118 4.17e+01 1wwjA 105 4.22e+01 2fqpA 97 4.24e+01 1o7zA 77 4.27e+01 d.9.1.1 86660 1bsg 266 4.27e+01 1btl e.3.1.1 42729 2fswA 107 4.29e+01 1s7zA 117 4.30e+01 a.159.3.1 98715 1v5aA 28 4.34e+01 1kamA 194 4.42e+01 c.26.1.3 72254 16vpA 366 4.44e+01 16vpA d.180.1.1 42601 1yr1A 119 4.48e+01 1qv1A 195 4.48e+01 a.39.1.5 96347 1g6hA 257 4.49e+01 1gajA c.37.1.12 60318 1v76A 96 4.56e+01 1d2fA 390 4.58e+01 1d2fA c.67.1.3 34411 1fexA 59 4.59e+01 a.4.1.3 59803 2b81A 323 4.63e+01 1rgxA 114 4.65e+01 g.77.1.1 104932 1z7xW 461 4.66e+01 1zosA 230 4.67e+01 2f1kA 279 4.69e+01 2fnjC 96 4.69e+01 1p5tA 127 4.73e+01 b.55.1.2 94148 1i5gA 144 4.74e+01 1ewxA c.47.1.10 61784 1i8kA 107 4.75e+01 b.1.1.1 71130 2c1xA 456 4.83e+01 1yuzA 202 4.90e+01 1os8A 223 4.94e+01 b.47.1.1 93481 1vecA 206 4.99e+01 c.37.1.19 100575 1uc2A 481 4.99e+01 d.261.1.1 99161 1j9lA 247 4.99e+01 c.106.1.1 62762 1msk 331 5.06e+01 1msk d.173.1.1 42495 1wimA 94 5.12e+01 2aibA 98 5.16e+01 1io0A 185 5.21e+01 c.10.1.1 76753 1weyA 104 5.22e+01 1pa4A 116 5.26e+01 d.52.7.1 94409 1vddA 228 5.29e+01 e.49.1.1 108519 1ihoA 283 5.43e+01 1ihoA c.26.1.4 62390 1to2I 64 5.45e+01 1aie 31 5.52e+01 1aie a.53.1.1 17829 1rb9 53 5.57e+01 1rb9 g.41.5.1 45214 1xouB 95 5.60e+01 1gj7B 253 5.68e+01 1qusA 322 5.68e+01 1ltm d.2.1.6 36991 2eu9A 355 5.75e+01 1xdnA 277 5.81e+01 1ejdA 419 5.90e+01 1uae d.68.2.2 39576 1o8xA 146 5.95e+01 c.47.1.10 86681 1lssA 140 5.96e+01 c.2.1.9 74246 1vg0A 650 5.97e+01 c.3.1.3,d.16.1.6 108596,108597 1b12A 248 5.97e+01 1b12A b.87.1.2 28388 1hdoA 206 6.00e+01 1he2A c.2.1.2 60965 1td6A 306 6.07e+01 2foyA 260 6.09e+01 1evlA 401 6.10e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1ufzA 83 6.21e+01 a.5.9.1 107821 1vsrA 136 6.26e+01 1vsrA c.52.1.15 33332 2awpA 198 6.27e+01 1zdrA 164 6.29e+01 1qh8B 519 6.29e+01 1qguB c.92.2.3 35634 2bycA 137 6.30e+01 1fm4A 159 6.42e+01 1bv1 d.129.3.1 76186 1ruwA 69 6.53e+01 1evhA 112 6.57e+01 1evhA b.55.1.4 26997 2ez9A 603 6.63e+01 1e5mA 416 6.64e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1ftrA 296 6.64e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1no7A 604 6.71e+01 e.48.1.1 92016 1v5mA 136 6.71e+01 b.55.1.1 108379 1ln4A 104 6.73e+01 d.68.4.1 74043 1ornA 226 6.78e+01 a.96.1.1 87342 1zpxA 23 6.84e+01 1xg8A 111 6.85e+01 2g2cA 167 6.87e+01 1f0xA 571 6.90e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1yw4A 341 7.06e+01 1ghpA 258 7.13e+01 1btl e.3.1.1 60520 1wt9B 123 7.16e+01 1cy5A 97 7.21e+01 1cy5A a.77.1.3 18430 2fe5A 94 7.22e+01 2c6cA 707 7.24e+01 1sr9A 644 7.25e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1gqzA 274 7.35e+01 d.21.1.1,d.21.1.1 83311,83312 1pieA 419 7.44e+01 d.14.1.5,d.58.26.7 94706,94707 1lt8A 406 7.49e+01 c.1.26.1 78186 2irfG 113 7.49e+01 2irfG a.4.5.23 16185 1xtzA 264 7.57e+01 1h5rA 293 7.57e+01 c.68.1.6 65623 1jnrA 643 7.66e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1zemA 262 7.68e+01 1obbA 480 7.69e+01 c.2.1.5,d.162.1.2 86760,86761 1t5iA 172 7.73e+01 c.37.1.19 106450 2bywA 418 7.76e+01 1stzA 338 7.76e+01 a.4.5.51,d.110.2.3 106009,106010 1mtpA 323 7.78e+01 e.1.1.1 85107 1k7kA 221 7.80e+01 c.51.4.1 72104 2fjbA 643 7.83e+01 1xqaA 113 7.90e+01 1pyoA 167 7.96e+01 c.17.1.1 95370 1lugA 259 7.97e+01 b.74.1.1 91127 1z90A 469 7.99e+01 2cxkA 95 8.00e+01 1gpuA 680 8.02e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1tp6A 128 8.05e+01 d.17.4.12 107184 1ooeA 236 8.11e+01 c.2.1.2 87196 1z6oM 191 8.18e+01 1n13A 52 8.22e+01 d.155.1.2 85248 1tr9A 341 8.24e+01 1rvkA 382 8.25e+01 c.1.11.2,d.54.1.1 97928,97929 1g1tA 157 8.25e+01 d.169.1.1,g.3.11.1 65104,65105 1ucdA 190 8.37e+01 d.124.1.1 107767 2gaxA 135 8.39e+01 1i24A 404 8.40e+01 c.2.1.2 83663 1o26A 232 8.43e+01 d.207.1.1 86566 1yzsA 121 8.45e+01 1xw3A 110 8.51e+01 1x79A 98 8.55e+01 1hc7A 477 8.60e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2gkeA 274 8.60e+01 1cozA 129 8.65e+01 1cozA c.26.1.2 31598 1s98A 107 8.68e+01 b.124.1.1 105377 1le6A 123 8.72e+01 a.133.1.2 73862 2cbiA 594 8.75e+01 1pgvA 197 8.77e+01 c.10.1.1 88073 1sxvA 172 8.80e+01 1ud0A 113 8.81e+01 a.8.4.1 99198 1wvqA 167 8.82e+01 1naqA 112 8.84e+01 d.58.5.2 91761 1f0lA 535 8.96e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1p3dA 475 8.96e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1lgpA 116 8.96e+01 b.26.1.2 73890