# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tqhA 247 3.12e-02 c.69.1.29 107225 1n40A 396 9.17e-02 a.104.1.1 79977 1t3gA 159 1.12e-01 1udzA 182 1.14e-01 b.51.1.1 99239 1wmaA 276 1.61e-01 2ew8A 249 1.90e-01 2ci1A 275 2.52e-01 1mrzA 293 2.91e-01 b.43.5.1,c.26.1.3 91452,91453 2cygA 312 3.07e-01 1msk 331 4.23e-01 1msk d.173.1.1 42495 1hdoA 206 4.58e-01 1he2A c.2.1.2 60965 2bh1A 250 4.85e-01 2bd0A 244 5.05e-01 2b9dA 52 5.42e-01 1udxA 416 5.53e-01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2fqxA 318 5.57e-01 2d83A 363 7.23e-01 1ey4A 149 7.84e-01 1snc b.40.1.1 24815 1m93B 245 8.32e-01 2c1xA 456 9.06e-01 1v76A 96 9.90e-01 1yj7A 171 9.92e-01 2erfA 209 1.04e+00 1bdb 277 1.08e+00 1bdb c.2.1.2 29874 1zo0A 126 1.18e+00 2gaxA 135 1.22e+00 1q9uA 130 1.25e+00 d.129.7.1 96314 1yljA 263 1.47e+00 1edqA 540 1.47e+00 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1ht6A 405 1.50e+00 b.71.1.1,c.1.8.1 83629,83630 8tlnE 316 1.52e+00 1hyt d.92.1.2 59075 1iro 54 1.52e+00 1rb9 g.41.5.1 45223 1wd7A 261 1.61e+00 1jae 471 1.62e+00 1smd b.71.1.1,c.1.8.1 27773,28760 2gk4A 232 1.68e+00 1kq6A 141 1.74e+00 d.189.1.1 91020 1regX 122 1.79e+00 1regX d.58.27.1 39406 1i24A 404 1.88e+00 c.2.1.2 83663 2end 138 1.89e+00 2end a.18.1.1 16400 1ve3A 227 2.00e+00 7taa 478 2.06e+00 7taa b.71.1.1,c.1.8.1 27778,28765 2c7pA 327 2.11e+00 1j5pA 253 2.24e+00 d.81.1.3,c.2.1.3 71577,83092 1dfmA 223 2.27e+00 1d2iA c.52.1.5 33295 2bwnA 401 2.44e+00 1shwB 181 2.50e+00 b.18.1.4 105563 2aq5A 402 2.66e+00 1g61A 228 2.89e+00 1g61A d.126.1.1 41126 1eceA 358 2.93e+00 1eceA c.1.8.3 28813 2gzqA 200 3.05e+00 1bebA 162 3.10e+00 1bebA b.60.1.1 27115 1ur1A 378 3.16e+00 c.1.8.3 99804 1xqaA 113 3.21e+00 1xaoA 121 3.22e+00 1t15A 214 3.25e+00 c.15.1.3,c.15.1.3 99067,99068 1kllA 130 3.32e+00 d.32.1.2 72720 1muwA 386 3.75e+00 c.1.15.3 79495 1e4yA 214 3.89e+00 1zin c.37.1.1,g.41.2.1 31901,45181 1w78A 422 4.03e+00 1ihoA 283 4.26e+00 1ihoA c.26.1.4 62390 2fa8A 105 4.36e+00 1gxrA 337 4.49e+00 b.69.4.1 70722 1jixA 351 4.49e+00 1c3jA c.87.1.1 63081 1kr4A 125 4.54e+00 d.58.5.2 72889 1f8vA 355 4.63e+00 2bbvA b.121.4.4 23329 1q6hA 224 4.81e+00 d.26.1.1 95975 1vcvA 226 4.81e+00 1v65A 64 5.03e+00 a.212.1.1 108393 1y7bA 542 5.05e+00 12asA 330 5.18e+00 12asA d.104.1.1 40783 1gtkA 313 5.23e+00 c.94.1.1,d.50.2.1 76346,76347 1y96B 85 5.24e+00 1oz9A 150 5.38e+00 d.92.1.15 93808 1wy7A 207 5.54e+00 2c36A 285 5.59e+00 2cw5A 255 5.71e+00 1m1cA 680 5.75e+00 e.42.1.1 78395 1s7zA 117 5.88e+00 a.159.3.1 98715 2bepA 159 5.92e+00 2fqpA 97 5.93e+00 1yk4A 52 5.94e+00 1s2oA 244 5.99e+00 1s5aA 150 6.00e+00 d.17.4.10 98525 1z90A 469 6.01e+00 2cwxA 430 6.39e+00 1gntA 553 6.65e+00 e.26.1.1 70290 1xg5A 279 6.87e+00 2d4pA 141 6.91e+00 1utaA 81 7.00e+00 d.58.52.1 108029 1f8mA 429 7.09e+00 1dquA c.1.12.7 29315 1g26A 31 7.14e+00 1g26A g.3.16.1 44381 1qh8B 519 7.18e+00 1qguB c.92.2.3 35634 1xhkA 187 7.19e+00 1eokA 290 7.24e+00 1eokA c.1.8.5 28991 1ub3A 220 7.25e+00 c.1.10.1 88395 1t77A 414 7.41e+00 1kwgA 645 7.65e+00 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ja9A 274 7.80e+00 c.2.1.2 62817 1ywzA 175 7.93e+00 2fb0A 94 8.13e+00 1lt8A 406 8.17e+00 c.1.26.1 78186 1n4qB 377 8.34e+00 a.102.4.3 91636 1u5mA 73 8.40e+00 2f9dA 125 8.45e+00 1bt3A 345 8.45e+00 1bt3A a.86.1.2 18507 1wiwA 290 8.61e+00 1pufB 73 8.67e+00 a.4.1.1 95132 1yzsA 121 9.00e+00 1q6uA 245 9.01e+00 d.26.1.1 95998 1uwvA 433 9.16e+00 b.40.4.12,c.66.1.40 100128,100129 1wcwA 261 9.17e+00 1ud9A 245 9.20e+00 d.131.1.2,d.131.1.2 107768,107769 1wnyA 186 9.24e+00 1wdtA 665 9.32e+00 1gj7B 253 9.41e+00 1rf6A 427 9.51e+00 d.68.2.2 97366 1xw3A 110 9.66e+00 1nzaA 103 9.75e+00 d.58.5.2 86444 1qo3C 137 9.77e+00 1qo3C d.169.1.1 42350 2bgkA 278 9.80e+00 1fe0A 68 1.00e+01 1cc8A d.58.17.1 39345 2d69A 430 1.01e+01 1ijyA 130 1.05e+01 1ijxA a.141.1.1 62517 2a1iA 146 1.07e+01 1wdyA 285 1.08e+01 1x0vA 354 1.09e+01 1brfA 53 1.11e+01 1rb9 g.41.5.1 45236 1k8kB 394 1.13e+01 c.55.1.1 68307 1xodA 118 1.13e+01 1n7hA 381 1.13e+01 c.2.1.2 80250 1vjoA 393 1.16e+01 c.67.1.3 100827 1h1yA 228 1.16e+01 c.1.2.2 76506 1xrtA 467 1.16e+01 2ca6A 386 1.17e+01 1qamA 244 1.19e+01 2ercA c.66.1.24 34220 1uanA 227 1.19e+01 c.134.1.1 99135 1ob8A 135 1.20e+01 1hc7A 477 1.21e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1ufzA 83 1.23e+01 a.5.9.1 107821 1ghpA 258 1.27e+01 1btl e.3.1.1 60520 1v7rA 186 1.27e+01 c.51.4.1 100482 1cy5A 97 1.27e+01 1cy5A a.77.1.3 18430 1du3A 130 1.30e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 2d1pA 140 1.30e+01 1rdg 53 1.31e+01 1rb9 g.41.5.1 45221 2fswA 107 1.34e+01 1jjtA 228 1.40e+01 1a7tA d.157.1.1 63139 1rewC 135 1.40e+01 g.7.1.3 97336 2a2pA 129 1.41e+01 1nh8A 304 1.41e+01 c.94.1.1,d.58.5.3 80507,80508 1r9hA 135 1.41e+01 d.26.1.1 97260 2c07A 285 1.42e+01 1cc8A 73 1.44e+01 1cc8A d.58.17.1 39343 1o8xA 146 1.46e+01 c.47.1.10 86681 1xmbA 418 1.47e+01 1zymA 258 1.48e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1g2iA 166 1.50e+01 1g2iA c.23.16.2 31438 6rxn 46 1.51e+01 1rb9 g.41.5.1 45222 1wkcA 184 1.51e+01 1suwA 249 1.51e+01 e.52.1.1 106027 1pbyA 489 1.52e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2ez9A 603 1.52e+01 1ou8A 111 1.52e+01 b.136.1.1 93543 1o57A 291 1.53e+01 a.4.5.40,c.61.1.1 92483,92484 1ej2A 181 1.53e+01 1f9aA c.26.1.3 59414 1quqB 121 1.54e+01 1quqB b.40.4.3 25305 2csgA 424 1.55e+01 1rgxA 114 1.57e+01 g.77.1.1 104932 1w18A 493 1.59e+01 1cjcA 460 1.59e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1m8jA 181 1.59e+01 c.26.1.3 84875 1ryaA 160 1.60e+01 d.113.1.5 105122 1evlA 401 1.62e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1sk4A 163 1.63e+01 d.118.1.1 105664 2be1A 339 1.63e+01 2cbiA 594 1.66e+01 1z0sA 278 1.68e+01 1ijxA 127 1.69e+01 1ijxA a.141.1.1 62511 1knvA 293 1.71e+01 c.52.1.7 68707 1z7xW 461 1.72e+01 1bm8 99 1.73e+01 1bm8 d.34.1.1 38528 1wfwA 74 1.77e+01 1ohzB 60 1.78e+01 a.139.1.1 93044 1k7kA 221 1.79e+01 c.51.4.1 72104 2bllA 345 1.80e+01 1wvqA 167 1.81e+01 1h30A 422 1.85e+01 b.29.1.4,b.29.1.4 76604,76605 1izoA 417 1.86e+01 a.104.1.1 83851 2f1kA 279 1.86e+01 1i5gA 144 1.90e+01 1ewxA c.47.1.10 61784 2an3A 289 1.91e+01 1tqzA 133 1.92e+01 1j2jB 45 1.92e+01 a.7.8.1 84017 1sdjA 310 1.92e+01 d.21.1.2,d.21.1.2 98807,98808 1w2wB 191 1.94e+01 1fukA 165 1.99e+01 1fukA c.37.1.19 32409 1zz1A 369 2.01e+01 2b5gA 171 2.02e+01 1id0A 152 2.05e+01 d.122.1.3 66111 1ml4A 308 2.06e+01 c.78.1.1,c.78.1.1 79255,79256 1heiA 451 2.07e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1j77A 209 2.08e+01 1j77A a.132.1.2 62674 1jfbA 404 2.11e+01 a.104.1.1 66624 1vkyA 347 2.14e+01 e.53.1.1 108696 1evhA 112 2.16e+01 1evhA b.55.1.4 26997 1kjyB 36 2.16e+01 1ufyA 122 2.20e+01 d.79.1.2 88489 1js3A 486 2.20e+01 c.67.1.6 67215 1y7lA 316 2.23e+01 2arhA 203 2.27e+01 1yr1A 119 2.32e+01 2bycA 137 2.33e+01 1gxjA 186 2.39e+01 d.215.1.1 70707 1zwyA 185 2.42e+01 1tr9A 341 2.42e+01 2f2hA 773 2.43e+01 1gg4A 452 2.44e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1qyaA 307 2.48e+01 d.21.1.2,d.21.1.2 104653,104654 1qyrA 252 2.50e+01 c.66.1.24 104657 1mzbA 136 2.50e+01 a.4.5.42 91497 1xi1A 575 2.52e+01 2c0hA 353 2.52e+01 1mixA 206 2.54e+01 a.11.2.1,b.55.1.5 79166,79167 1lssA 140 2.54e+01 c.2.1.9 74246 1o26A 232 2.59e+01 d.207.1.1 86566 1i19A 561 2.59e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1dg9A 157 2.60e+01 1dg9A c.44.1.1 32637 1j3mA 129 2.62e+01 d.129.7.1 103836 2g03A 194 2.64e+01 1zccA 248 2.67e+01 1ne9A 335 2.71e+01 d.108.1.4,d.108.1.4 91839,91840 1ooeA 236 2.76e+01 c.2.1.2 87196 1rb9 53 2.77e+01 1rb9 g.41.5.1 45214 2d1pB 119 2.81e+01 1siqA 392 2.81e+01 a.29.3.1,e.6.1.1 105585,105586 1u7iA 136 2.82e+01 d.32.1.7 107724 1s95A 333 2.83e+01 d.159.1.3 105375 2ge3A 170 2.84e+01 1stzA 338 2.85e+01 a.4.5.51,d.110.2.3 106009,106010 1s98A 107 2.86e+01 b.124.1.1 105377 1wleA 501 2.87e+01 1kamA 194 2.87e+01 c.26.1.3 72254 1bsg 266 2.89e+01 1btl e.3.1.1 42729 1vqoV 71 2.89e+01 1xniA 118 2.91e+01 1fp3A 402 2.92e+01 1fp3A a.102.1.3 18842 1g1tA 157 2.93e+01 d.169.1.1,g.3.11.1 65104,65105 1u5hA 273 2.95e+01 1yxmA 303 2.97e+01 1t71A 281 3.05e+01 1wt9B 123 3.06e+01 1gegA 256 3.07e+01 1ybvA c.2.1.2 29888 1t1gA 364 3.08e+01 c.41.1.2 106246 2eifA 136 3.09e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1n6jG 35 3.10e+01 1ucdA 190 3.17e+01 d.124.1.1 107767 2cdnA 201 3.17e+01 1qtnB 95 3.17e+01 1pauB 1f2vA 219 3.18e+01 1f2vA c.23.17.1 59627 1shfA 59 3.20e+01 1bbzA b.34.2.1 24462 2f06A 144 3.21e+01 1tt7A 330 3.24e+01 1ze3D 125 3.25e+01 1vqoN 187 3.26e+01 1v54B 227 3.28e+01 b.6.1.2,f.17.2.1 100322,100323 1xdnA 277 3.29e+01 1a3aA 148 3.33e+01 1a3aA d.112.1.1 40917 1dpe 507 3.35e+01 1dpe c.94.1.1 35799 1rvkA 382 3.37e+01 c.1.11.2,d.54.1.1 97928,97929 2fliA 220 3.38e+01 2f0aA 98 3.38e+01 1a34A 159 3.39e+01 1a34A b.121.7.1 23286 1sfxA 109 3.42e+01 a.4.5.50 105505 1lba 146 3.46e+01 1lba d.118.1.1 41062 2foyA 260 3.46e+01 1kafA 108 3.48e+01 d.199.1.1 68372 1vsrA 136 3.49e+01 1vsrA c.52.1.15 33332 1fljA 260 3.51e+01 2cba b.74.1.1 27954 1s2xA 206 3.53e+01 a.47.3.1 105229 1vchA 175 3.56e+01 1m3sA 186 3.60e+01 c.80.1.3 78573 1hfoA 113 3.62e+01 d.80.1.3 61006 2culA 232 3.65e+01 1fexA 59 3.66e+01 a.4.1.3 59803 1kshB 152 3.71e+01 b.1.18.8 72915 1fm4A 159 3.71e+01 1bv1 d.129.3.1 76186 1lc5A 364 3.76e+01 c.67.1.1 73827 1fo8A 343 3.77e+01 1foaA c.68.1.10 59927 1tqyA 424 3.77e+01 c.95.1.1,c.95.1.1 107245,107246 1jdc 429 3.79e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1mtpA 323 3.80e+01 e.1.1.1 85107 1tkiA 321 3.81e+01 1tkiA d.144.1.7 41638 1s1fA 406 3.81e+01 2c30A 321 3.86e+01 1rypI 222 3.88e+01 d.153.1.4 41877 1j8mF 297 3.94e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1djtA 64 3.94e+01 1aho g.3.7.1 44132 1lugA 259 3.95e+01 b.74.1.1 91127 2aa1A 144 3.95e+01 1e5mA 416 3.97e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 2azeC 46 3.97e+01 1qlpA 394 3.99e+01 1ovaA e.1.1.1 42628 2b81A 323 4.00e+01 2bywA 418 4.02e+01 1x9iA 302 4.03e+01 2f5tX 233 4.07e+01 1lla 628 4.09e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1nw1A 429 4.10e+01 d.144.1.8 86286 1vjqA 79 4.15e+01 k.43.1.1 100830 1hz6A 72 4.15e+01 2ptl d.15.7.1 61429 1x1tA 260 4.25e+01 1bgk 37 4.27e+01 1bgk g.19.1.1 44875 1gycA 499 4.27e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1jpyA 137 4.27e+01 g.17.1.6 67065 1wruA 379 4.31e+01 1qyiA 384 4.34e+01 c.108.1.13 96595 1dj0A 264 4.37e+01 1dj0A d.265.1.1 90337 1lzlA 323 4.37e+01 c.69.1.2 78306 1cozA 129 4.39e+01 1cozA c.26.1.2 31598 1b63A 333 4.43e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1xwwA 157 4.43e+01 1kopA 223 4.43e+01 2cba b.74.1.1 27966 1ocsA 162 4.45e+01 d.189.1.1 92776 1b4bA 71 4.46e+01 1b4aA d.74.2.1 39718 1ytlA 174 4.48e+01 1yqeA 282 4.49e+01 1x89A 178 4.50e+01 1t07A 94 4.51e+01 d.279.1.1 106196 1ys7A 233 4.53e+01 1fv5A 36 4.54e+01 1fv5A g.37.1.2 45075 1p3dA 475 4.56e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1th7A 81 4.56e+01 1kyqA 274 4.59e+01 c.2.1.11,e.37.1.1 73281,73282 1h3gA 601 4.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1aoeA 192 4.63e+01 1aoeA c.71.1.1 34923 2fcjA 119 4.65e+01 1t5iA 172 4.70e+01 c.37.1.19 106450 1aie 31 4.72e+01 1aie a.53.1.1 17829 1rp3B 88 4.78e+01 a.137.11.1 97681 1wb4A 297 4.80e+01 1n2eA 300 4.81e+01 c.26.1.4 85268 1pv1A 299 4.83e+01 1ug4A 60 4.83e+01 1mdoA 393 4.91e+01 c.67.1.4 79013 1f0xA 571 4.92e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1iseA 185 4.93e+01 d.67.3.1 90691 1ctf 74 5.01e+01 1ctf d.45.1.1 38759 1jl5A 454 5.02e+01 c.10.2.6 66830 1nbaA 264 5.07e+01 1nbaA c.33.1.3 31753 1vggA 161 5.07e+01 1ukuA 102 5.16e+01 d.58.5.2 99533 1sq5A 308 5.16e+01 c.37.1.6 105882 1q02A 52 5.19e+01 a.5.2.1 95490 1ysjA 404 5.19e+01 1csn 298 5.21e+01 1csn d.144.1.7 41664 1nn5A 215 5.22e+01 c.37.1.1 85892 1ruwA 69 5.23e+01 1sheA 103 5.28e+01 d.274.1.1 105551 1fcyA 236 5.29e+01 2lbd a.123.1.1 19282 1ni4B 341 5.29e+01 c.36.1.7,c.48.1.2 85729,85730 1na3A 91 5.40e+01 k.38.1.1 85481 1ash 150 5.41e+01 1ash a.1.1.2 15622 1dhn 121 5.41e+01 1dhn d.96.1.3 40663 2ccjA 205 5.46e+01 2cspA 130 5.48e+01 1rq2A 382 5.50e+01 c.32.1.1,d.79.2.1 105048,105049 2aneA 125 5.52e+01 1zud2 66 5.53e+01 1a3c 181 5.56e+01 1a3c c.61.1.1 34095 1j2zA 270 5.56e+01 b.81.1.1 90805 1gefA 123 5.60e+01 1gefA c.52.1.18 60465 1otjA 283 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