# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0293.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.79834 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 V 0.095 0.014 0.003 0.001 0.082 0.806 2 S 0.307 0.049 0.003 0.001 0.074 0.565 3 L 0.222 0.069 0.005 0.001 0.086 0.617 4 N 0.103 0.045 0.005 0.001 0.359 0.487 5 F 0.019 0.007 0.098 0.013 0.677 0.186 6 K 0.012 0.008 0.043 0.025 0.697 0.214 7 D 0.005 0.007 0.017 0.039 0.600 0.333 8 P 0.001 0.001 0.038 0.938 0.018 0.006 9 E 0.001 0.001 0.012 0.982 0.004 0.001 10 A 0.001 0.001 0.011 0.986 0.002 0.001 11 V 0.001 0.001 0.002 0.995 0.001 0.001 12 R 0.001 0.001 0.002 0.993 0.002 0.001 13 A 0.001 0.001 0.001 0.997 0.001 0.001 14 L 0.001 0.001 0.001 0.996 0.001 0.001 15 T 0.001 0.001 0.002 0.995 0.001 0.001 16 C 0.001 0.001 0.004 0.993 0.002 0.001 17 T 0.001 0.001 0.003 0.993 0.002 0.002 18 L 0.001 0.001 0.007 0.974 0.008 0.009 19 L 0.003 0.002 0.014 0.943 0.023 0.014 20 R 0.002 0.001 0.021 0.935 0.031 0.010 21 E 0.003 0.001 0.038 0.909 0.031 0.019 22 D 0.002 0.001 0.042 0.878 0.029 0.048 23 F 0.005 0.005 0.030 0.698 0.062 0.200 24 G 0.007 0.001 0.003 0.017 0.046 0.927 25 L 0.075 0.006 0.002 0.006 0.044 0.867 26 S 0.383 0.006 0.002 0.004 0.084 0.521 27 I 0.685 0.010 0.003 0.002 0.047 0.253 28 D 0.792 0.015 0.002 0.002 0.034 0.155 29 I 0.535 0.024 0.003 0.002 0.079 0.357 30 P 0.231 0.020 0.014 0.005 0.304 0.425 31 L 0.011 0.003 0.602 0.033 0.296 0.055 32 E 0.006 0.001 0.707 0.028 0.232 0.026 33 R 0.011 0.004 0.722 0.031 0.211 0.021 34 L 0.047 0.046 0.191 0.065 0.377 0.274 35 I 0.076 0.056 0.054 0.051 0.374 0.390 36 P 0.096 0.023 0.047 0.060 0.409 0.365 37 T 0.132 0.041 0.042 0.044 0.344 0.397 38 V 0.113 0.037 0.022 0.023 0.370 0.435 39 P 0.132 0.018 0.041 0.043 0.342 0.425 40 L 0.144 0.016 0.058 0.053 0.321 0.408 41 R 0.360 0.045 0.044 0.047 0.288 0.216 42 L 0.429 0.017 0.020 0.037 0.279 0.218 43 N 0.479 0.005 0.015 0.021 0.258 0.222 44 Y 0.905 0.005 0.004 0.013 0.041 0.033 45 I 0.952 0.002 0.002 0.012 0.012 0.020 46 H 0.955 0.001 0.002 0.013 0.012 0.016 47 W 0.891 0.002 0.002 0.024 0.018 0.063 48 V 0.646 0.007 0.002 0.022 0.042 0.282 49 E 0.416 0.007 0.004 0.021 0.111 0.441