# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0293.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.79834 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 V 0.042 0.001 0.001 0.001 0.008 0.001 0.946 2 S 0.550 0.044 0.004 0.004 0.013 0.010 0.375 3 L 0.593 0.041 0.006 0.006 0.024 0.005 0.326 4 N 0.637 0.009 0.026 0.005 0.034 0.015 0.273 5 F 0.273 0.022 0.069 0.017 0.063 0.102 0.456 6 K 0.094 0.033 0.013 0.019 0.388 0.082 0.370 7 D 0.011 0.005 0.001 0.003 0.497 0.001 0.481 8 P 0.001 0.001 0.019 0.920 0.003 0.053 0.006 9 E 0.001 0.001 0.008 0.972 0.001 0.018 0.001 10 A 0.001 0.001 0.009 0.986 0.001 0.003 0.001 11 V 0.001 0.001 0.003 0.994 0.001 0.001 0.001 12 R 0.001 0.001 0.002 0.993 0.001 0.004 0.001 13 A 0.001 0.001 0.002 0.985 0.001 0.012 0.001 14 L 0.001 0.001 0.002 0.986 0.001 0.010 0.001 15 T 0.001 0.001 0.004 0.984 0.001 0.009 0.002 16 C 0.001 0.001 0.006 0.982 0.001 0.010 0.001 17 T 0.001 0.001 0.006 0.970 0.001 0.021 0.001 18 L 0.004 0.001 0.015 0.909 0.005 0.059 0.007 19 L 0.027 0.009 0.024 0.827 0.016 0.059 0.037 20 R 0.043 0.005 0.081 0.695 0.051 0.063 0.062 21 E 0.007 0.001 0.068 0.655 0.020 0.241 0.009 22 D 0.009 0.001 0.075 0.339 0.041 0.491 0.044 23 F 0.051 0.017 0.041 0.129 0.115 0.413 0.234 24 G 0.166 0.011 0.007 0.010 0.060 0.300 0.446 25 L 0.353 0.015 0.001 0.003 0.033 0.005 0.591 26 S 0.735 0.019 0.001 0.002 0.008 0.005 0.229 27 I 0.825 0.006 0.001 0.002 0.009 0.003 0.153 28 D 0.845 0.008 0.002 0.001 0.022 0.004 0.119 29 I 0.692 0.041 0.003 0.001 0.070 0.002 0.191 30 P 0.193 0.014 0.006 0.001 0.036 0.004 0.747 31 L 0.009 0.002 0.678 0.076 0.023 0.174 0.038 32 E 0.003 0.001 0.641 0.057 0.025 0.262 0.010 33 R 0.011 0.005 0.681 0.092 0.030 0.128 0.052 34 L 0.112 0.133 0.150 0.135 0.131 0.115 0.224 35 I 0.134 0.046 0.064 0.031 0.149 0.067 0.509 36 P 0.114 0.020 0.037 0.014 0.095 0.126 0.594 37 T 0.122 0.042 0.038 0.017 0.283 0.097 0.401 38 V 0.107 0.013 0.012 0.008 0.600 0.014 0.247 39 P 0.117 0.014 0.061 0.024 0.084 0.076 0.623 40 L 0.272 0.038 0.081 0.038 0.186 0.112 0.273 41 R 0.466 0.029 0.041 0.014 0.119 0.101 0.229 42 L 0.625 0.010 0.025 0.009 0.036 0.023 0.271 43 N 0.622 0.004 0.015 0.011 0.180 0.029 0.140 44 Y 0.915 0.002 0.010 0.009 0.012 0.015 0.038 45 I 0.963 0.002 0.001 0.007 0.002 0.002 0.023 46 H 0.972 0.003 0.001 0.007 0.003 0.002 0.011 47 W 0.881 0.004 0.002 0.009 0.009 0.010 0.084 48 V 0.419 0.008 0.002 0.010 0.035 0.013 0.513 49 E 0.107 0.004 0.002 0.005 0.036 0.009 0.837