# TARGET T0293 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0293.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.79834 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 V 0.019 0.513 0.253 0.029 0.136 0.017 0.008 0.003 0.020 0.003 0.001 2 S 0.018 0.529 0.341 0.007 0.023 0.045 0.004 0.001 0.030 0.001 0.001 3 L 0.047 0.564 0.225 0.019 0.035 0.058 0.003 0.001 0.047 0.001 0.001 4 N 0.046 0.262 0.140 0.073 0.026 0.235 0.077 0.003 0.136 0.001 0.001 5 F 0.127 0.203 0.199 0.125 0.203 0.043 0.043 0.022 0.015 0.016 0.003 6 K 0.153 0.292 0.259 0.189 0.055 0.033 0.005 0.001 0.011 0.002 0.001 7 D 0.006 0.103 0.596 0.002 0.055 0.094 0.002 0.001 0.136 0.005 0.001 8 P 0.992 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 A 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 T 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 C 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 T 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.982 0.001 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 L 0.864 0.008 0.015 0.103 0.001 0.003 0.002 0.001 0.002 0.001 0.001 20 R 0.885 0.012 0.037 0.039 0.003 0.006 0.010 0.002 0.003 0.002 0.001 21 E 0.864 0.029 0.027 0.052 0.011 0.006 0.006 0.001 0.002 0.002 0.001 22 D 0.504 0.069 0.063 0.267 0.015 0.034 0.022 0.002 0.024 0.001 0.001 23 F 0.098 0.065 0.089 0.626 0.040 0.008 0.046 0.014 0.010 0.003 0.001 24 G 0.013 0.008 0.016 0.035 0.029 0.012 0.696 0.157 0.009 0.024 0.001 25 L 0.009 0.578 0.312 0.015 0.054 0.018 0.001 0.001 0.012 0.001 0.001 26 S 0.028 0.397 0.355 0.032 0.029 0.106 0.012 0.001 0.037 0.001 0.002 27 I 0.011 0.821 0.077 0.006 0.059 0.011 0.001 0.001 0.013 0.001 0.001 28 D 0.017 0.267 0.386 0.012 0.006 0.219 0.010 0.001 0.081 0.001 0.001 29 I 0.006 0.534 0.282 0.002 0.022 0.025 0.003 0.001 0.127 0.001 0.001 30 P 0.007 0.006 0.907 0.001 0.001 0.061 0.001 0.001 0.006 0.001 0.012 31 L 0.722 0.007 0.157 0.066 0.003 0.014 0.013 0.008 0.002 0.004 0.004 32 E 0.593 0.015 0.030 0.197 0.012 0.008 0.093 0.047 0.002 0.003 0.001 33 R 0.303 0.097 0.095 0.426 0.016 0.020 0.016 0.002 0.025 0.001 0.001 34 L 0.159 0.175 0.485 0.077 0.020 0.049 0.017 0.004 0.011 0.003 0.002 35 I 0.056 0.382 0.215 0.006 0.021 0.029 0.015 0.001 0.274 0.001 0.001 36 P 0.170 0.006 0.774 0.006 0.001 0.015 0.001 0.001 0.001 0.002 0.024 37 T 0.388 0.129 0.282 0.099 0.023 0.044 0.009 0.007 0.014 0.004 0.002 38 V 0.121 0.429 0.203 0.009 0.020 0.030 0.007 0.001 0.179 0.001 0.001 39 P 0.232 0.009 0.663 0.006 0.001 0.070 0.002 0.001 0.003 0.001 0.015 40 L 0.620 0.050 0.114 0.096 0.025 0.036 0.030 0.014 0.011 0.003 0.001 41 R 0.424 0.270 0.093 0.073 0.057 0.035 0.022 0.006 0.017 0.002 0.001 42 L 0.299 0.254 0.292 0.037 0.015 0.077 0.006 0.001 0.019 0.001 0.001 43 N 0.538 0.088 0.043 0.277 0.016 0.016 0.011 0.002 0.009 0.001 0.001 44 Y 0.138 0.497 0.090 0.047 0.160 0.022 0.026 0.003 0.015 0.001 0.001 45 I 0.185 0.585 0.151 0.017 0.013 0.026 0.001 0.001 0.020 0.001 0.001 46 H 0.231 0.485 0.093 0.048 0.041 0.032 0.007 0.001 0.061 0.001 0.001 47 W 0.214 0.208 0.336 0.052 0.026 0.100 0.025 0.003 0.032 0.002 0.002 48 V 0.267 0.293 0.238 0.111 0.021 0.042 0.004 0.001 0.021 0.001 0.001 49 E 0.401 0.133 0.224 0.074 0.060 0.028 0.034 0.009 0.012 0.024 0.001