# List of top-scoring protein chains for T0293.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3gA 159 2.42e+00 1uuqA 440 4.55e+00 c.1.8.3 100015 1wmaA 276 1.14e+01 1s9uA 207 1.19e+01 a.184.1.1 105390 2cq2A 114 1.32e+01 1h1dA 221 1.45e+01 c.66.1.1 83452 1mof 55 1.52e+01 1mof h.3.2.1 46324 1v76A 96 1.75e+01 2fviA 301 2.66e+01 1cr1A 296 2.93e+01 1cr1A c.37.1.11 32286 1e0jA 289 2.93e+01 1cr1A c.37.1.11 32290 2cw5A 255 3.04e+01 1vf8A 377 3.10e+01 1t8sA 484 3.15e+01 c.56.2.1 106679 2ersA 66 3.40e+01 1n5dA 288 3.71e+01 c.2.1.2 80030 1e4yA 214 3.78e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1akeA 214 3.78e+01 1zin c.37.1.1,g.41.2.1 31905,45185 1qoyA 318 3.82e+01 1qoyA h.4.4.1 45788 1e4vA 214 3.86e+01 1zin c.37.1.1,g.41.2.1 31903,45183 1s24A 87 3.95e+01 g.41.5.1 98366 1t71A 281 4.09e+01 1v5mA 136 4.10e+01 b.55.1.1 108379 1smmA 54 4.15e+01 g.41.5.1 98923 1x5qA 110 4.21e+01 1regX 122 4.27e+01 1regX d.58.27.1 39406 1y25A 165 4.78e+01 1u5mA 73 4.81e+01 1xvqA 175 4.89e+01 1t9oA 54 4.94e+01 1t9qA 54 5.23e+01 1f80D 81 5.40e+01 1acp a.28.1.1 59686 1q57A 503 5.43e+01 c.37.1.11,e.13.1.2 95867,95868 1x3oA 80 5.44e+01 1r1dA 247 5.54e+01 c.69.1.29 96813 1tqhA 247 5.61e+01 c.69.1.29 107225 1s1hO 65 5.95e+01 i.1.1.1 105167 2f1vA 197 6.09e+01 2aw4X 63 6.25e+01 1tw3A 360 6.26e+01 a.4.5.29,c.66.1.12 107373,107374 2g2dA 193 6.30e+01 1i13A 221 6.39e+01 c.61.1.1 71098 1tc1A 220 6.43e+01 1tc1A c.61.1.1 34083 1i0lA 221 6.45e+01 c.61.1.1 71096 1hy8A 76 6.45e+01 a.28.1.1 65959 1tc2A 221 6.47e+01 1tc1A c.61.1.1 34085 1i14A 221 6.50e+01 c.61.1.1 71100 1i0iA 221 6.50e+01 c.61.1.1 71094 1p18A 221 6.50e+01 c.61.1.1 104053 1ywzA 175 6.65e+01 1x5kA 124 6.69e+01 2ayvA 166 6.74e+01 1t77A 414 6.86e+01 1g3kA 174 6.95e+01 1nedA d.153.1.4 41989 1wiwA 290 6.95e+01 1c09A 54 7.04e+01 1rb9 g.41.5.1 45228 1t9pA 54 7.23e+01 5rxn 54 7.24e+01 1rb9 g.41.5.1 45225 1i9zA 347 7.27e+01 1i9yA d.151.1.2 62102 1b2jA 54 7.59e+01 1rb9 g.41.5.1 45231 1b13A 54 7.60e+01 1rb9 g.41.5.1 45227 2avaA 82 7.65e+01 1iro 54 7.70e+01 1rb9 g.41.5.1 45223 1b2oA 54 7.74e+01 1rb9 g.41.5.1 45233 1xe3A 245 7.80e+01 1iu5A 53 7.85e+01 g.41.5.1 71434 2ftcM 110 8.01e+01 1ufzA 83 8.18e+01 a.5.9.1 107821 1x9iA 302 8.20e+01 1t5bA 201 8.29e+01 c.23.5.3 106433 1xtmA 175 8.33e+01 1g26A 31 8.48e+01 1g26A g.3.16.1 44381 1uanA 227 8.56e+01 c.134.1.1 99135 1zu4A 320 8.58e+01 1isnA 323 8.69e+01 a.11.2.1,b.55.1.5,d.15.1.4 71400,71401,71402 1qcqA 148 8.97e+01 1u9aA d.20.1.1 38329