# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o26A 232 3.58e-01 d.207.1.1 86566 1lz1 130 1.58e+00 3lzt d.2.1.2 36415 1wmaA 276 1.72e+00 1y08A 323 2.00e+00 1g1sA 162 2.02e+00 d.169.1.1,g.3.11.1 65100,65101 1t9kA 347 2.45e+00 c.124.1.5 106721 1yfsA 465 2.77e+00 1jsf 130 2.82e+00 3lzt d.2.1.2 36410 1lokA 291 3.25e+00 c.56.5.4 78122 1cnv 299 3.32e+00 1cnv c.1.8.5 28989 2airB 153 3.59e+00 1t0bA 252 3.62e+00 c.23.16.6 106199 1xkyA 301 3.69e+00 1t2aA 375 3.81e+00 c.2.1.2 99078 2gdzA 267 4.24e+00 1hurA 180 4.26e+00 1hurA c.37.1.8 32052 1k7kA 221 4.31e+00 c.51.4.1 72104 1u0tA 307 4.39e+00 e.52.1.1 107567 1qqyA 130 4.97e+00 3lzt d.2.1.2 36586 1h49A 512 5.13e+00 c.1.8.4 83477 1vns 609 5.58e+00 1vns a.111.1.3 19061 2aumA 317 5.83e+00 2aunA 317 5.83e+00 1zrsA 317 5.83e+00 1bkcI 256 6.24e+00 1bkcA d.92.1.10 40334 2an3A 289 6.40e+00 1p5hA 428 6.72e+00 c.123.1.1 87802 1m3yA 413 7.06e+00 b.121.2.3,b.121.2.3 78579,78580 2c0rA 362 7.50e+00 1e55A 512 7.53e+00 1e70M c.1.8.4 28934 1qv9A 283 7.75e+00 c.127.1.1 96356 1n9eA 787 8.71e+00 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1xwwA 157 8.92e+00 1u5hA 273 9.02e+00 1v4pA 157 9.38e+00 1t3gA 159 9.51e+00 1uf3A 228 9.87e+00 d.159.1.6 99317 1mhyD 521 1.01e+01 1mhyD a.25.1.2 16780 2ffeA 311 1.01e+01 1xmbA 418 1.05e+01 1lqaA 346 1.10e+01 c.1.7.1 84674 1qs0A 407 1.12e+01 1qs0A c.36.1.11 31829 1w36C 1122 1.13e+01 2c07A 285 1.14e+01 2f57A 317 1.19e+01 1bkcE 256 1.21e+01 1bkcA d.92.1.10 40333 1aa8A 347 1.21e+01 1an9A 1e3aB 560 1.30e+01 1ajqB 1bsg 266 1.33e+01 1btl e.3.1.1 42729 1amy 403 1.34e+01 1jdc b.71.1.1,c.1.8.1 27799,28786 1xqwA 293 1.38e+01 1d1vA 444 1.46e+01 1nseA d.174.1.1 59101 1y0yA 353 1.48e+01 1ed5A 444 1.52e+01 1nseA d.174.1.1 42530 1d2zB 153 1.55e+01 1d2zB a.77.1.2 18439 1k8tA 510 1.63e+01 e.41.1.1 68316 2b0mA 393 1.63e+01 1t3cA 421 1.68e+01 d.92.1.7 106343 1uanA 227 1.71e+01 c.134.1.1 99135 1vf8A 377 1.72e+01 1zl0A 311 1.78e+01 1yj7A 171 1.78e+01 1kq6A 141 1.80e+01 d.189.1.1 91020 1wdtA 665 1.85e+01 1wkyA 464 1.88e+01 1heiA 451 1.94e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 2bd0A 244 1.95e+01 1mplA 349 1.99e+01 e.3.1.1 79387 2b9dA 52 2.02e+01 1ei1A 391 2.10e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1vyiA 112 2.13e+01 1ohvA 472 2.14e+01 c.67.1.4 93031 1n2sA 299 2.18e+01 c.2.1.2 79857 1b63A 333 2.21e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1e4yA 214 2.21e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1awqA 164 2.21e+01 2cpl b.62.1.1 27461 2aaa 484 2.21e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1q35A 320 2.22e+01 c.94.1.1 95661 1qwkA 317 2.23e+01 c.1.7.1 96482 1kxu 333 2.23e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1epwA 1290 2.24e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1mtzA 293 2.26e+01 c.69.1.7 79467 1o59A 355 2.30e+01 b.18.1.22,b.18.1.22 92495,92496 1jae 471 2.34e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1ut8A 291 2.34e+01 a.60.7.1,c.120.1.2 99908,99909 1a8l 226 2.39e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2fp4B 395 2.42e+01 1p2fA 220 2.45e+01 a.4.6.1,c.23.1.1 87720,87721 1mucA 373 2.45e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1h0hA 977 2.48e+01 b.52.2.2,c.81.1.1 76435,76436 1yhtA 367 2.53e+01 1ll2A 333 2.57e+01 c.68.1.14 74005 1vb5A 276 2.70e+01 4ubpC 570 2.70e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1fecA 490 2.79e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1s7zA 117 2.79e+01 a.159.3.1 98715 1thjA 214 2.80e+01 1qreA b.81.1.5 28072 1h1yA 228 2.84e+01 c.1.2.2 76506 1ysjA 404 2.88e+01 1ppjB 439 2.96e+01 d.185.1.1,d.185.1.1 104254,104255 2gfhA 260 2.98e+01 1ympA 135 2.99e+01 1wdyA 285 3.05e+01 1sz7A 200 3.07e+01 1gadO 330 3.07e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1sflA 238 3.08e+01 1zkcA 197 3.10e+01 1ghsA 306 3.14e+01 1aq0A c.1.8.3 28840 1h4rA 314 3.15e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1ydnA 295 3.17e+01 1ua7A 422 3.19e+01 b.71.1.1,c.1.8.1 107759,107760 1lniA 96 3.23e+01 d.1.1.2 74046 1zosA 230 3.27e+01 1py5A 326 3.35e+01 d.144.1.7 104389 1kmoA 774 3.50e+01 f.4.3.3 72753 1phk 298 3.56e+01 1cdkA d.144.1.7 41635 2ap1A 327 3.77e+01 1vi6A 208 3.82e+01 c.23.15.1 100736 1ht6A 405 3.88e+01 b.71.1.1,c.1.8.1 83629,83630 1ex0A 731 3.93e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2bvyA 475 3.95e+01 1j08A 226 3.95e+01 c.47.1.2,c.47.1.2 83855,83856 2fnaA 357 4.05e+01 2fazA 78 4.07e+01 1fiy 883 4.07e+01 1fiy c.1.12.3 29307 1bw0A 416 4.08e+01 1bw0A c.67.1.1 34385 1n40A 396 4.15e+01 a.104.1.1 79977 1suwA 249 4.20e+01 e.52.1.1 106027 1uu1A 335 4.22e+01 c.67.1.1 99993 1cid 177 4.25e+01 1cid b.1.1.1,b.1.1.3 19740,21679 2adcA 229 4.30e+01 1x7oA 287 4.45e+01 1aerA 205 4.48e+01 1aerA d.166.1.1 42249 2atfA 200 4.48e+01 1x88A 359 4.48e+01 1pi4A 358 4.54e+01 e.3.1.1 94700 1nxcA 478 4.57e+01 a.102.2.1 92293 2auaA 224 4.60e+01 1anv 356 4.60e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1txgA 335 4.65e+01 1l0gA 358 4.74e+01 e.3.1.1 73400 1tag 324 4.77e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1eudA 311 4.79e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1ji6A 589 4.81e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 3pmgA 561 4.83e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1xc3A 302 4.85e+01 1zxxA 319 4.93e+01 1fsyA 358 4.95e+01 1gceA e.3.1.1 60016 2culA 232 4.95e+01 1zs7A 190 5.00e+01 1eq1A 166 5.02e+01 a.63.1.1 64910 1pgvA 197 5.05e+01 c.10.1.1 88073 1mrzA 293 5.17e+01 b.43.5.1,c.26.1.3 91452,91453 1iro 54 5.23e+01 1rb9 g.41.5.1 45223 1n0qA 93 5.28e+01 k.37.1.1 79754 1gk9B 557 5.28e+01 1x3lA 440 5.41e+01 1uylA 236 5.50e+01 d.122.1.1 108147 1dszA 86 5.51e+01 2nllB g.39.1.2 45129 2c6qA 351 5.56e+01 1pk6C 129 5.58e+01 b.22.1.1 94803 1f1xA 322 5.58e+01 d.32.1.3,d.32.1.3 83208,83209 2gsaA 432 5.64e+01 2gsaA c.67.1.4 34446 2masA 314 5.65e+01 2masA c.70.1.1 34810 1xaoA 121 5.66e+01 1zq4A 693 5.77e+01 1vprA 374 5.83e+01 1wosA 364 5.83e+01 b.44.2.1,d.250.1.1 109468,109469 1dqpA 230 5.85e+01 1dqnA c.61.1.1 34069 1p1xA 260 5.86e+01 c.1.10.1 104060 1iysA 262 5.87e+01 e.3.1.1 90723 2rmcA 182 5.87e+01 2cpl b.62.1.1 27491 2a6hE 99 5.88e+01 1f46A 140 5.89e+01 1f46A d.129.4.1 59643 2bznA 351 5.96e+01 1bza 262 6.02e+01 1btl e.3.1.1 42701 1a3c 181 6.05e+01 1a3c c.61.1.1 34095 1vj0A 380 6.05e+01 b.35.1.2,c.2.1.1 100786,100787 1bd8 156 6.07e+01 1bd8 d.211.1.1 19157 1lmq 129 6.12e+01 3lzt d.2.1.2 36588 1zowA 313 6.13e+01 1reqB 637 6.15e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1hr6B 443 6.16e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 2cwcA 303 6.19e+01 1enfA 212 6.20e+01 3seb b.40.2.2,d.15.6.1 25198,37787 2a8jA 420 6.22e+01 1qopB 396 6.25e+01 2tysB c.79.1.1 35270 1b9oA 123 6.42e+01 3lzt d.2.1.2 36597 1zaiA 363 6.44e+01 1dg9A 157 6.45e+01 1dg9A c.44.1.1 32637 1onxA 390 6.55e+01 b.92.1.7,c.1.9.13 87176,87177 1gvnB 287 6.58e+01 c.37.1.21 76354 2g8mA 264 6.61e+01 1iugA 352 6.69e+01 c.67.1.3 90699 1xx6A 191 6.77e+01 1xo7A 166 6.78e+01 1e9rA 437 6.84e+01 c.37.1.11 64827 1h2bA 359 6.95e+01 b.35.1.2,c.2.1.1 90543,90544 1s9uA 207 6.98e+01 a.184.1.1 105390 1vquA 374 7.11e+01 1cr5A 189 7.14e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1zbtA 371 7.14e+01 2g30A 258 7.19e+01 1xwfA 431 7.23e+01 1o7kA 131 7.33e+01 d.189.1.1 81144 1zd0A 150 7.35e+01 1ukmB 128 7.35e+01 d.169.1.1 99500 1jv1A 505 7.39e+01 c.68.1.5 71892 2a40B 260 7.54e+01 2ac2A 309 7.57e+01 1kypA 237 7.62e+01 d.22.1.1 73280 1ddgA 374 7.70e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1i3zA 103 7.73e+01 d.93.1.1 83667 1tzbA 302 7.76e+01 c.80.1.1 107470 2ffyA 358 7.77e+01 1hy7A 173 7.80e+01 d.92.1.11 65957 1v8eA 224 7.94e+01 1jmxA 494 8.00e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1kb9G 125 8.02e+01 f.27.1.1 77322 1xk7A 408 8.06e+01 1hr6A 475 8.07e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1edqA 540 8.13e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1k07A 263 8.13e+01 d.157.1.1 77218 1hrhA 136 8.15e+01 1rthA c.55.3.1 33577 1c0eA 157 8.16e+01 1dg9A c.44.1.1 32638 1t5oA 351 8.16e+01 c.124.1.5 106459 1ob8A 135 8.23e+01 2ng1 293 8.28e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1b7yB 785 8.34e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2a9iA 113 8.40e+01 1jfrA 262 8.41e+01 1jfrA c.69.1.16 34724 2d2jA 329 8.41e+01 1brmA 367 8.45e+01 1brmA c.2.1.3,d.81.1.1 30030,39945 1qbkB 890 8.46e+01 1qbkB a.118.1.1 19127 1a8rA 221 8.50e+01 1a8rA d.96.1.1 40587 1nuyA 337 8.55e+01 e.7.1.1 86213 1y75A 118 8.69e+01 1in4A 334 8.79e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1e94F 449 8.86e+01 1do0A c.37.1.20 32443 1oi0A 124 8.99e+01 c.97.3.1 93045