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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0293 MGC3329, Homo sapiens, 250 res
    • gi|7466917|pir||H65005_188:410 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72), hypothetical, aroC 3'region - Escherichia coli (strain K-12) [Taxonomy]
    • gi|73967246|ref|XP_868505.1|_42:291 PREDICTED: similar to Hypothetical UPF0049 protein ZK1128.2 in chromosome III isoform 2 [Canis familiaris]
    • gi|73967244|ref|XP_537774.2|_42:291 PREDICTED: similar to Hypothetical UPF0049 protein ZK1128.2 in chromosome III isoform 1 [Canis familiaris]
    • gi|68178496|ref|ZP_00551615.1|_61:289 Modification methylase HemK [Desulfuromonas acetoxidans DSM 684]
    • gi|67981456|gb|EAM70893.1| Modification methylase HemK [Desulfuromonas acetoxidans DSM 684]
    • gi|88192213|pdb|2B3T|A_55:275 Chain A, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc [Taxonomy]
    • gi|60593724|pdb|1VQ1|B_78:289 Chain B, Crystal Structure Of N5-Glutamine Methyltransferase, Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At 2.80 A Resolution [Taxonomy]
    • gi|60593723|pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase, Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At 2.80 A Resolution [Taxonomy]
    • gi|75854124|ref|ZP_00761838.1|_12:212 COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Vibrio sp. Ex25]
    • gi|68178647|ref|ZP_00551759.1|_12:244 Methyltransferase small [Desulfuromonas acetoxidans DSM 684]
    • gi|67981300|gb|EAM70746.1| Methyltransferase small [Desulfuromonas acetoxidans DSM 684]
    • gi|38372568|sp|Q885T9|UBIG_PSESM_2:175 3-demethylubiquinone-9 3-methyltransferase (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) [Taxonomy]
    • gi|42571805|ref|NP_973993.1|_224:427 S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ phosphoethanolamine N-methyltransferase [Arabidopsis thaliana]
    • gi|75854516|ref|ZP_00762205.1|_193:396 COG2230: Cyclopropane fatty acid synthase and related methyltransferases [Vibrio sp. Ex25]
    • gi|33567903|emb|CAE31816.1|_166:325 conserved hypothetical protein [