/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0292.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0292.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0292/ -e s/START_COL/1/ \ -e s/REAL_PDB/2javA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175075242 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.80412 sec, elapsed time= 5.96885 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.88211 sec, elapsed time= 6.06799 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0292 numbered 1 through 277 Created new target T0292 from T0292.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2javA expands to /projects/compbio/data/pdb/2jav.pdb.gz 2javA:Skipped atom 498, because occupancy 5.0000000e-01 <= existing 0.500 in 2javA Skipped atom 499, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 501, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 502, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 503, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 797, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 854, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1615, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1787, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1789, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1791, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1817, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 2049, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 2050, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 2051, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in 2javA Skipped atom 2053, because occupancy 0.500 <= existing 0.500 in 2javA Read 253 residues and 2014 atoms. # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.12077 sec, elapsed time= 8.37817 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 252 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -64.8406 # GDT_score(maxd=8,maxw=2.9)= -66.6197 # GDT_score(maxd=8,maxw=3.2)= -63.2901 # GDT_score(maxd=8,maxw=3.5)= -60.0843 # GDT_score(maxd=10,maxw=3.8)= -63.5007 # GDT_score(maxd=10,maxw=4)= -61.3286 # GDT_score(maxd=10,maxw=4.2)= -59.1991 # GDT_score(maxd=12,maxw=4.3)= -63.2271 # GDT_score(maxd=12,maxw=4.5)= -61.1335 # GDT_score(maxd=12,maxw=4.7)= -59.1055 # GDT_score(maxd=14,maxw=5.2)= -58.2379 # GDT_score(maxd=14,maxw=5.5)= -55.4886 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2997.000 rmsd (weighted)= 4.516 (unweighted)= 14.058 superimposing iter= 1 total_weight= 8070.398 rmsd (weighted)= 2.118 (unweighted)= 14.147 superimposing iter= 2 total_weight= 3115.719 rmsd (weighted)= 1.666 (unweighted)= 14.203 superimposing iter= 3 total_weight= 2332.821 rmsd (weighted)= 1.518 (unweighted)= 14.267 superimposing iter= 4 total_weight= 2240.870 rmsd (weighted)= 1.410 (unweighted)= 14.338 superimposing iter= 5 total_weight= 2307.184 rmsd (weighted)= 1.289 (unweighted)= 14.410 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1227401134.pdb -s /var/tmp/to_scwrl_1227401134.seq -o /var/tmp/from_scwrl_1227401134.pdb > /var/tmp/scwrl_1227401134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227401134.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -64.9402 # GDT_score(maxd=8,maxw=2.9)= -66.842 # GDT_score(maxd=8,maxw=3.2)= -63.4274 # GDT_score(maxd=8,maxw=3.5)= -60.0094 # GDT_score(maxd=10,maxw=3.8)= -63.4302 # GDT_score(maxd=10,maxw=4)= -61.1801 # GDT_score(maxd=10,maxw=4.2)= -59.0204 # GDT_score(maxd=12,maxw=4.3)= -63.0804 # GDT_score(maxd=12,maxw=4.5)= -60.9573 # GDT_score(maxd=12,maxw=4.7)= -58.8922 # GDT_score(maxd=14,maxw=5.2)= -57.9218 # GDT_score(maxd=14,maxw=5.5)= -55.0959 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_896033200.pdb -s /var/tmp/to_scwrl_896033200.seq -o /var/tmp/from_scwrl_896033200.pdb > /var/tmp/scwrl_896033200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_896033200.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -79.2829 # GDT_score(maxd=8,maxw=2.9)= -83.9734 # GDT_score(maxd=8,maxw=3.2)= -80.2853 # GDT_score(maxd=8,maxw=3.5)= -76.3438 # GDT_score(maxd=10,maxw=3.8)= -78.4357 # GDT_score(maxd=10,maxw=4)= -75.9053 # GDT_score(maxd=10,maxw=4.2)= -73.3838 # GDT_score(maxd=12,maxw=4.3)= -76.8598 # GDT_score(maxd=12,maxw=4.5)= -74.4264 # GDT_score(maxd=12,maxw=4.7)= -72.0251 # GDT_score(maxd=14,maxw=5.2)= -70.0789 # GDT_score(maxd=14,maxw=5.5)= -66.7477 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2033565767.pdb -s /var/tmp/to_scwrl_2033565767.seq -o /var/tmp/from_scwrl_2033565767.pdb > /var/tmp/scwrl_2033565767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2033565767.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -64.9402 # GDT_score(maxd=8,maxw=2.9)= -66.2768 # GDT_score(maxd=8,maxw=3.2)= -62.7798 # GDT_score(maxd=8,maxw=3.5)= -59.3596 # GDT_score(maxd=10,maxw=3.8)= -62.8521 # GDT_score(maxd=10,maxw=4)= -60.6642 # GDT_score(maxd=10,maxw=4.2)= -58.5793 # GDT_score(maxd=12,maxw=4.3)= -62.6063 # GDT_score(maxd=12,maxw=4.5)= -60.5641 # GDT_score(maxd=12,maxw=4.7)= -58.658 # GDT_score(maxd=14,maxw=5.2)= -57.9534 # GDT_score(maxd=14,maxw=5.5)= -55.3165 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_580681159.pdb -s /var/tmp/to_scwrl_580681159.seq -o /var/tmp/from_scwrl_580681159.pdb > /var/tmp/scwrl_580681159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_580681159.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.876494 # GDT_score = -57.5697 # GDT_score(maxd=8,maxw=2.9)= -60.1007 # GDT_score(maxd=8,maxw=3.2)= -56.7997 # GDT_score(maxd=8,maxw=3.5)= -53.6295 # GDT_score(maxd=10,maxw=3.8)= -56.55 # GDT_score(maxd=10,maxw=4)= -54.5483 # GDT_score(maxd=10,maxw=4.2)= -52.654 # GDT_score(maxd=12,maxw=4.3)= -56.1616 # GDT_score(maxd=12,maxw=4.5)= -54.311 # GDT_score(maxd=12,maxw=4.7)= -52.5334 # GDT_score(maxd=14,maxw=5.2)= -51.7535 # GDT_score(maxd=14,maxw=5.5)= -49.3926 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_422146986.pdb -s /var/tmp/to_scwrl_422146986.seq -o /var/tmp/from_scwrl_422146986.pdb > /var/tmp/scwrl_422146986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422146986.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0292.try1-opt2.pdb looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -48.4064 # GDT_score(maxd=8,maxw=2.9)= -50.5607 # GDT_score(maxd=8,maxw=3.2)= -48.6014 # GDT_score(maxd=8,maxw=3.5)= -46.3997 # GDT_score(maxd=10,maxw=3.8)= -47.6005 # GDT_score(maxd=10,maxw=4)= -46.1434 # GDT_score(maxd=10,maxw=4.2)= -44.6929 # GDT_score(maxd=12,maxw=4.3)= -46.7211 # GDT_score(maxd=12,maxw=4.5)= -45.3202 # GDT_score(maxd=12,maxw=4.7)= -43.9524 # GDT_score(maxd=14,maxw=5.2)= -42.924 # GDT_score(maxd=14,maxw=5.5)= -41.0051 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2997.000 rmsd (weighted)= 18.158 (unweighted)= 21.341 superimposing iter= 1 total_weight= 4329.542 rmsd (weighted)= 11.844 (unweighted)= 21.518 superimposing iter= 2 total_weight= 2772.322 rmsd (weighted)= 9.487 (unweighted)= 22.178 superimposing iter= 3 total_weight= 3247.376 rmsd (weighted)= 6.836 (unweighted)= 22.789 superimposing iter= 4 total_weight= 3716.570 rmsd (weighted)= 4.632 (unweighted)= 23.009 superimposing iter= 5 total_weight= 3597.854 rmsd (weighted)= 3.245 (unweighted)= 23.161 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)N165.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)H166.N and (T0292)S169.N only 0.000 apart, marking (T0292)H166.N as missing WARNING: atoms too close: (T0292)H166.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)H166.CA as missing WARNING: atoms too close: (T0292)F231.C and (T0292)R232.C only 0.000 apart, marking (T0292)R232.C as missing WARNING: atoms too close: (T0292)R232.N and (T0292)R233.N only 0.000 apart, marking (T0292)R232.N as missing WARNING: atoms too close: (T0292)R232.CA and (T0292)R233.CA only 0.000 apart, marking (T0292)R232.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.912351 # GDT_score = -59.8606 # GDT_score(maxd=8,maxw=2.9)= -62.5522 # GDT_score(maxd=8,maxw=3.2)= -59.0185 # GDT_score(maxd=8,maxw=3.5)= -55.6548 # GDT_score(maxd=10,maxw=3.8)= -58.7301 # GDT_score(maxd=10,maxw=4)= -56.6225 # GDT_score(maxd=10,maxw=4.2)= -54.6322 # GDT_score(maxd=12,maxw=4.3)= -58.3121 # GDT_score(maxd=12,maxw=4.5)= -56.3688 # GDT_score(maxd=12,maxw=4.7)= -54.5114 # GDT_score(maxd=14,maxw=5.2)= -53.6944 # GDT_score(maxd=14,maxw=5.5)= -51.2275 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)H166.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)D167.N and (T0292)S169.N only 0.000 apart, marking (T0292)D167.N as missing WARNING: atoms too close: (T0292)D167.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)D167.CA as missing WARNING: atoms too close: (T0292)A216.C and (T0292)S218.C only 0.000 apart, marking (T0292)S218.C as missing WARNING: atoms too close: (T0292)F217.N and (T0292)Q219.N only 0.000 apart, marking (T0292)F217.N as missing WARNING: atoms too close: (T0292)F217.CA and (T0292)Q219.CA only 0.000 apart, marking (T0292)F217.CA as missing WARNING: atoms too close: (T0292)E221.C and (T0292)K225.C only 0.000 apart, marking (T0292)K225.C as missing WARNING: atoms too close: (T0292)L222.N and (T0292)I226.N only 0.000 apart, marking (T0292)L222.N as missing WARNING: atoms too close: (T0292)L222.CA and (T0292)I226.CA only 0.000 apart, marking (T0292)L222.CA as missing WARNING: atoms too close: (T0292)R232.C and (T0292)R233.C only 0.000 apart, marking (T0292)R233.C as missing WARNING: atoms too close: (T0292)R233.N and (T0292)I234.N only 0.000 apart, marking (T0292)R233.N as missing WARNING: atoms too close: (T0292)R233.CA and (T0292)I234.CA only 0.000 apart, marking (T0292)R233.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.884462 # GDT_score = -61.753 # GDT_score(maxd=8,maxw=2.9)= -64.0872 # GDT_score(maxd=8,maxw=3.2)= -60.6357 # GDT_score(maxd=8,maxw=3.5)= -57.1258 # GDT_score(maxd=10,maxw=3.8)= -59.8312 # GDT_score(maxd=10,maxw=4)= -57.644 # GDT_score(maxd=10,maxw=4.2)= -55.5434 # GDT_score(maxd=12,maxw=4.3)= -59.0771 # GDT_score(maxd=12,maxw=4.5)= -57.0389 # GDT_score(maxd=12,maxw=4.7)= -55.1157 # GDT_score(maxd=14,maxw=5.2)= -54.0725 # GDT_score(maxd=14,maxw=5.5)= -51.525 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0292)K26.C and (T0292)D28.C only 0.000 apart, marking (T0292)D28.C as missing WARNING: atoms too close: (T0292)S27.N and (T0292)G29.N only 0.000 apart, marking (T0292)S27.N as missing WARNING: atoms too close: (T0292)S27.CA and (T0292)G29.CA only 0.000 apart, marking (T0292)S27.CA as missing WARNING: atoms too close: (T0292)G40.C and (T0292)E44.C only 0.000 apart, marking (T0292)E44.C as missing WARNING: atoms too close: (T0292)S41.N and (T0292)A45.N only 0.000 apart, marking (T0292)S41.N as missing WARNING: atoms too close: (T0292)S41.CA and (T0292)A45.CA only 0.000 apart, marking (T0292)S41.CA as missing WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)Q104.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)Y105.N and (T0292)L106.N only 0.000 apart, marking (T0292)Y105.N as missing WARNING: atoms too close: (T0292)Y105.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)Y105.CA as missing WARNING: atoms too close: (T0292)G132.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)H133.N and (T0292)V135.N only 0.000 apart, marking (T0292)H133.N as missing WARNING: atoms too close: (T0292)H133.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)H133.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0292)Y39.C and (T0292)M42.C only 0.000 apart, marking (T0292)M42.C as missing WARNING: atoms too close: (T0292)G40.N and (T0292)T43.N only 0.000 apart, marking (T0292)G40.N as missing WARNING: atoms too close: (T0292)G40.CA and (T0292)T43.CA only 0.000 apart, marking (T0292)G40.CA as missing WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)G89.C and (T0292)G90.C only 0.000 apart, marking (T0292)G90.C as missing WARNING: atoms too close: (T0292)G90.N and (T0292)D91.N only 0.000 apart, marking (T0292)G90.N as missing WARNING: atoms too close: (T0292)G90.CA and (T0292)D91.CA only 0.000 apart, marking (T0292)G90.CA as missing WARNING: atoms too close: (T0292)R103.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)Q104.N and (T0292)L106.N only 0.000 apart, marking (T0292)Q104.N as missing WARNING: atoms too close: (T0292)Q104.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)Q104.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)I163.C and (T0292)H166.C only 0.000 apart, marking (T0292)H166.C as missing WARNING: atoms too close: (T0292)L164.N and (T0292)D167.N only 0.000 apart, marking (T0292)L164.N as missing WARNING: atoms too close: (T0292)L164.CA and (T0292)D167.CA only 0.000 apart, marking (T0292)L164.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)N165.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)H166.N and (T0292)S169.N only 0.000 apart, marking (T0292)H166.N as missing WARNING: atoms too close: (T0292)H166.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)H166.CA as missing WARNING: atoms too close: (T0292)F231.C and (T0292)R232.C only 0.000 apart, marking (T0292)R232.C as missing WARNING: atoms too close: (T0292)R232.N and (T0292)R233.N only 0.000 apart, marking (T0292)R232.N as missing WARNING: atoms too close: (T0292)R232.CA and (T0292)R233.CA only 0.000 apart, marking (T0292)R232.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0292.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-server.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_976687158.pdb -s /var/tmp/to_scwrl_976687158.seq -o /var/tmp/from_scwrl_976687158.pdb > /var/tmp/scwrl_976687158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976687158.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_9233621.pdb -s /var/tmp/to_scwrl_9233621.seq -o /var/tmp/from_scwrl_9233621.pdb > /var/tmp/scwrl_9233621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_9233621.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1986009062.pdb -s /var/tmp/to_scwrl_1986009062.seq -o /var/tmp/from_scwrl_1986009062.pdb > /var/tmp/scwrl_1986009062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1986009062.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_121345411.pdb -s /var/tmp/to_scwrl_121345411.seq -o /var/tmp/from_scwrl_121345411.pdb > /var/tmp/scwrl_121345411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121345411.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1037621872.pdb -s /var/tmp/to_scwrl_1037621872.seq -o /var/tmp/from_scwrl_1037621872.pdb > /var/tmp/scwrl_1037621872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1037621872.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_545758338.pdb -s /var/tmp/to_scwrl_545758338.seq -o /var/tmp/from_scwrl_545758338.pdb > /var/tmp/scwrl_545758338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_545758338.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2019916710.pdb -s /var/tmp/to_scwrl_2019916710.seq -o /var/tmp/from_scwrl_2019916710.pdb > /var/tmp/scwrl_2019916710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2019916710.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_923634840.pdb -s /var/tmp/to_scwrl_923634840.seq -o /var/tmp/from_scwrl_923634840.pdb > /var/tmp/scwrl_923634840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923634840.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_62127720.pdb -s /var/tmp/to_scwrl_62127720.seq -o /var/tmp/from_scwrl_62127720.pdb > /var/tmp/scwrl_62127720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62127720.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_679843434.pdb -s /var/tmp/to_scwrl_679843434.seq -o /var/tmp/from_scwrl_679843434.pdb > /var/tmp/scwrl_679843434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679843434.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1862013345.pdb -s /var/tmp/to_scwrl_1862013345.seq -o /var/tmp/from_scwrl_1862013345.pdb > /var/tmp/scwrl_1862013345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862013345.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_713822845.pdb -s /var/tmp/to_scwrl_713822845.seq -o /var/tmp/from_scwrl_713822845.pdb > /var/tmp/scwrl_713822845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_713822845.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1100943584.pdb -s /var/tmp/to_scwrl_1100943584.seq -o /var/tmp/from_scwrl_1100943584.pdb > /var/tmp/scwrl_1100943584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100943584.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_406825547.pdb -s /var/tmp/to_scwrl_406825547.seq -o /var/tmp/from_scwrl_406825547.pdb > /var/tmp/scwrl_406825547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_406825547.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1958907938.pdb -s /var/tmp/to_scwrl_1958907938.seq -o /var/tmp/from_scwrl_1958907938.pdb > /var/tmp/scwrl_1958907938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1958907938.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_553605600.pdb -s /var/tmp/to_scwrl_553605600.seq -o /var/tmp/from_scwrl_553605600.pdb > /var/tmp/scwrl_553605600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_553605600.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_471720633.pdb -s /var/tmp/to_scwrl_471720633.seq -o /var/tmp/from_scwrl_471720633.pdb > /var/tmp/scwrl_471720633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471720633.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_346407492.pdb -s /var/tmp/to_scwrl_346407492.seq -o /var/tmp/from_scwrl_346407492.pdb > /var/tmp/scwrl_346407492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346407492.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_268398298.pdb -s /var/tmp/to_scwrl_268398298.seq -o /var/tmp/from_scwrl_268398298.pdb > /var/tmp/scwrl_268398298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_268398298.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_594325589.pdb -s /var/tmp/to_scwrl_594325589.seq -o /var/tmp/from_scwrl_594325589.pdb > /var/tmp/scwrl_594325589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_594325589.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_790744567.pdb -s /var/tmp/to_scwrl_790744567.seq -o /var/tmp/from_scwrl_790744567.pdb > /var/tmp/scwrl_790744567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_790744567.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_995560868.pdb -s /var/tmp/to_scwrl_995560868.seq -o /var/tmp/from_scwrl_995560868.pdb > /var/tmp/scwrl_995560868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_995560868.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1057719325.pdb -s /var/tmp/to_scwrl_1057719325.seq -o /var/tmp/from_scwrl_1057719325.pdb > /var/tmp/scwrl_1057719325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1057719325.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_697250521.pdb -s /var/tmp/to_scwrl_697250521.seq -o /var/tmp/from_scwrl_697250521.pdb > /var/tmp/scwrl_697250521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697250521.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1997081400.pdb -s /var/tmp/to_scwrl_1997081400.seq -o /var/tmp/from_scwrl_1997081400.pdb > /var/tmp/scwrl_1997081400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1997081400.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_394642135.pdb -s /var/tmp/to_scwrl_394642135.seq -o /var/tmp/from_scwrl_394642135.pdb > /var/tmp/scwrl_394642135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_394642135.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1924651655.pdb -s /var/tmp/to_scwrl_1924651655.seq -o /var/tmp/from_scwrl_1924651655.pdb > /var/tmp/scwrl_1924651655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1924651655.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_745630954.pdb -s /var/tmp/to_scwrl_745630954.seq -o /var/tmp/from_scwrl_745630954.pdb > /var/tmp/scwrl_745630954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745630954.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_280724255.pdb -s /var/tmp/to_scwrl_280724255.seq -o /var/tmp/from_scwrl_280724255.pdb > /var/tmp/scwrl_280724255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280724255.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_357849167.pdb -s /var/tmp/to_scwrl_357849167.seq -o /var/tmp/from_scwrl_357849167.pdb > /var/tmp/scwrl_357849167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_357849167.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1167777939.pdb -s /var/tmp/to_scwrl_1167777939.seq -o /var/tmp/from_scwrl_1167777939.pdb > /var/tmp/scwrl_1167777939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1167777939.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1257411413.pdb -s /var/tmp/to_scwrl_1257411413.seq -o /var/tmp/from_scwrl_1257411413.pdb > /var/tmp/scwrl_1257411413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1257411413.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_367082788.pdb -s /var/tmp/to_scwrl_367082788.seq -o /var/tmp/from_scwrl_367082788.pdb > /var/tmp/scwrl_367082788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367082788.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1006303356.pdb -s /var/tmp/to_scwrl_1006303356.seq -o /var/tmp/from_scwrl_1006303356.pdb > /var/tmp/scwrl_1006303356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006303356.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1378756824.pdb -s /var/tmp/to_scwrl_1378756824.seq -o /var/tmp/from_scwrl_1378756824.pdb > /var/tmp/scwrl_1378756824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378756824.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1404704660.pdb -s /var/tmp/to_scwrl_1404704660.seq -o /var/tmp/from_scwrl_1404704660.pdb > /var/tmp/scwrl_1404704660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1404704660.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1552061693.pdb -s /var/tmp/to_scwrl_1552061693.seq -o /var/tmp/from_scwrl_1552061693.pdb > /var/tmp/scwrl_1552061693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552061693.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1251189887.pdb -s /var/tmp/to_scwrl_1251189887.seq -o /var/tmp/from_scwrl_1251189887.pdb > /var/tmp/scwrl_1251189887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1251189887.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_180855853.pdb -s /var/tmp/to_scwrl_180855853.seq -o /var/tmp/from_scwrl_180855853.pdb > /var/tmp/scwrl_180855853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180855853.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1614189413.pdb -s /var/tmp/to_scwrl_1614189413.seq -o /var/tmp/from_scwrl_1614189413.pdb > /var/tmp/scwrl_1614189413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1614189413.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)A223.C and (T0292)G224.N only 0.000 apart, marking (T0292)G224.N as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.CA only 0.000 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.CA only 0.000 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.O and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1931033321.pdb -s /var/tmp/to_scwrl_1931033321.seq -o /var/tmp/from_scwrl_1931033321.pdb > /var/tmp/scwrl_1931033321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931033321.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2042869199.pdb -s /var/tmp/to_scwrl_2042869199.seq -o /var/tmp/from_scwrl_2042869199.pdb > /var/tmp/scwrl_2042869199.log Error: Couldn't open file /var/tmp/from_scwrl_2042869199.pdb or /var/tmp/from_scwrl_2042869199.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2042869199_b.pdb or decoys//var/tmp/from_scwrl_2042869199_b.pdb.gz for input Trying /var/tmp/from_scwrl_2042869199_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2042869199_b.pdb or /var/tmp/from_scwrl_2042869199_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2042869199_a.pdb or decoys//var/tmp/from_scwrl_2042869199_a.pdb.gz for input Trying /var/tmp/from_scwrl_2042869199_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2042869199_a.pdb or /var/tmp/from_scwrl_2042869199_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2042869199.pdb or /var/tmp/from_scwrl_2042869199_b.pdb or /var/tmp/from_scwrl_2042869199_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_180528611.pdb -s /var/tmp/to_scwrl_180528611.seq -o /var/tmp/from_scwrl_180528611.pdb > /var/tmp/scwrl_180528611.log Error: Couldn't open file /var/tmp/from_scwrl_180528611.pdb or /var/tmp/from_scwrl_180528611.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_180528611_b.pdb or decoys//var/tmp/from_scwrl_180528611_b.pdb.gz for input Trying /var/tmp/from_scwrl_180528611_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_180528611_b.pdb or /var/tmp/from_scwrl_180528611_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_180528611_a.pdb or decoys//var/tmp/from_scwrl_180528611_a.pdb.gz for input Trying /var/tmp/from_scwrl_180528611_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_180528611_a.pdb or /var/tmp/from_scwrl_180528611_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_180528611.pdb or /var/tmp/from_scwrl_180528611_b.pdb or /var/tmp/from_scwrl_180528611_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_884493259.pdb -s /var/tmp/to_scwrl_884493259.seq -o /var/tmp/from_scwrl_884493259.pdb > /var/tmp/scwrl_884493259.log Error: Couldn't open file /var/tmp/from_scwrl_884493259.pdb or /var/tmp/from_scwrl_884493259.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_884493259_b.pdb or decoys//var/tmp/from_scwrl_884493259_b.pdb.gz for input Trying /var/tmp/from_scwrl_884493259_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_884493259_b.pdb or /var/tmp/from_scwrl_884493259_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_884493259_a.pdb or decoys//var/tmp/from_scwrl_884493259_a.pdb.gz for input Trying /var/tmp/from_scwrl_884493259_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_884493259_a.pdb or /var/tmp/from_scwrl_884493259_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_884493259.pdb or /var/tmp/from_scwrl_884493259_b.pdb or /var/tmp/from_scwrl_884493259_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_302211099.pdb -s /var/tmp/to_scwrl_302211099.seq -o /var/tmp/from_scwrl_302211099.pdb > /var/tmp/scwrl_302211099.log Error: Couldn't open file /var/tmp/from_scwrl_302211099.pdb or /var/tmp/from_scwrl_302211099.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_302211099_b.pdb or decoys//var/tmp/from_scwrl_302211099_b.pdb.gz for input Trying /var/tmp/from_scwrl_302211099_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_302211099_b.pdb or /var/tmp/from_scwrl_302211099_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_302211099_a.pdb or decoys//var/tmp/from_scwrl_302211099_a.pdb.gz for input Trying /var/tmp/from_scwrl_302211099_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_302211099_a.pdb or /var/tmp/from_scwrl_302211099_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_302211099.pdb or /var/tmp/from_scwrl_302211099_b.pdb or /var/tmp/from_scwrl_302211099_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2139436549.pdb -s /var/tmp/to_scwrl_2139436549.seq -o /var/tmp/from_scwrl_2139436549.pdb > /var/tmp/scwrl_2139436549.log Error: Couldn't open file /var/tmp/from_scwrl_2139436549.pdb or /var/tmp/from_scwrl_2139436549.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2139436549_b.pdb or decoys//var/tmp/from_scwrl_2139436549_b.pdb.gz for input Trying /var/tmp/from_scwrl_2139436549_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2139436549_b.pdb or /var/tmp/from_scwrl_2139436549_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2139436549_a.pdb or decoys//var/tmp/from_scwrl_2139436549_a.pdb.gz for input Trying /var/tmp/from_scwrl_2139436549_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2139436549_a.pdb or /var/tmp/from_scwrl_2139436549_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2139436549.pdb or /var/tmp/from_scwrl_2139436549_b.pdb or /var/tmp/from_scwrl_2139436549_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1438098858.pdb -s /var/tmp/to_scwrl_1438098858.seq -o /var/tmp/from_scwrl_1438098858.pdb > /var/tmp/scwrl_1438098858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1438098858.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_773931733.pdb -s /var/tmp/to_scwrl_773931733.seq -o /var/tmp/from_scwrl_773931733.pdb > /var/tmp/scwrl_773931733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_773931733.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_338360394.pdb -s /var/tmp/to_scwrl_338360394.seq -o /var/tmp/from_scwrl_338360394.pdb > /var/tmp/scwrl_338360394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_338360394.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1706497156.pdb -s /var/tmp/to_scwrl_1706497156.seq -o /var/tmp/from_scwrl_1706497156.pdb > /var/tmp/scwrl_1706497156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706497156.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1368257321.pdb -s /var/tmp/to_scwrl_1368257321.seq -o /var/tmp/from_scwrl_1368257321.pdb > /var/tmp/scwrl_1368257321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368257321.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1129104960.pdb -s /var/tmp/to_scwrl_1129104960.seq -o /var/tmp/from_scwrl_1129104960.pdb > /var/tmp/scwrl_1129104960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1129104960.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_554574378.pdb -s /var/tmp/to_scwrl_554574378.seq -o /var/tmp/from_scwrl_554574378.pdb > /var/tmp/scwrl_554574378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554574378.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_278492999.pdb -s /var/tmp/to_scwrl_278492999.seq -o /var/tmp/from_scwrl_278492999.pdb > /var/tmp/scwrl_278492999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_278492999.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1826355481.pdb -s /var/tmp/to_scwrl_1826355481.seq -o /var/tmp/from_scwrl_1826355481.pdb > /var/tmp/scwrl_1826355481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826355481.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_404172131.pdb -s /var/tmp/to_scwrl_404172131.seq -o /var/tmp/from_scwrl_404172131.pdb > /var/tmp/scwrl_404172131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_404172131.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_673135134.pdb -s /var/tmp/to_scwrl_673135134.seq -o /var/tmp/from_scwrl_673135134.pdb > /var/tmp/scwrl_673135134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673135134.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1603523490.pdb -s /var/tmp/to_scwrl_1603523490.seq -o /var/tmp/from_scwrl_1603523490.pdb > /var/tmp/scwrl_1603523490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603523490.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1149803084.pdb -s /var/tmp/to_scwrl_1149803084.seq -o /var/tmp/from_scwrl_1149803084.pdb > /var/tmp/scwrl_1149803084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1149803084.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_953859390.pdb -s /var/tmp/to_scwrl_953859390.seq -o /var/tmp/from_scwrl_953859390.pdb > /var/tmp/scwrl_953859390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953859390.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1961372657.pdb -s /var/tmp/to_scwrl_1961372657.seq -o /var/tmp/from_scwrl_1961372657.pdb > /var/tmp/scwrl_1961372657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1961372657.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_170097378.pdb -s /var/tmp/to_scwrl_170097378.seq -o /var/tmp/from_scwrl_170097378.pdb > /var/tmp/scwrl_170097378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_170097378.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_63787156.pdb -s /var/tmp/to_scwrl_63787156.seq -o /var/tmp/from_scwrl_63787156.pdb > /var/tmp/scwrl_63787156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63787156.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_180971799.pdb -s /var/tmp/to_scwrl_180971799.seq -o /var/tmp/from_scwrl_180971799.pdb > /var/tmp/scwrl_180971799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180971799.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1176400733.pdb -s /var/tmp/to_scwrl_1176400733.seq -o /var/tmp/from_scwrl_1176400733.pdb > /var/tmp/scwrl_1176400733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1176400733.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1442543980.pdb -s /var/tmp/to_scwrl_1442543980.seq -o /var/tmp/from_scwrl_1442543980.pdb > /var/tmp/scwrl_1442543980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1442543980.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1585676459.pdb -s /var/tmp/to_scwrl_1585676459.seq -o /var/tmp/from_scwrl_1585676459.pdb > /var/tmp/scwrl_1585676459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585676459.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_580978780.pdb -s /var/tmp/to_scwrl_580978780.seq -o /var/tmp/from_scwrl_580978780.pdb > /var/tmp/scwrl_580978780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_580978780.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_546250221.pdb -s /var/tmp/to_scwrl_546250221.seq -o /var/tmp/from_scwrl_546250221.pdb > /var/tmp/scwrl_546250221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546250221.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1766532312.pdb -s /var/tmp/to_scwrl_1766532312.seq -o /var/tmp/from_scwrl_1766532312.pdb > /var/tmp/scwrl_1766532312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766532312.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_47684546.pdb -s /var/tmp/to_scwrl_47684546.seq -o /var/tmp/from_scwrl_47684546.pdb > /var/tmp/scwrl_47684546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_47684546.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_329799896.pdb -s /var/tmp/to_scwrl_329799896.seq -o /var/tmp/from_scwrl_329799896.pdb > /var/tmp/scwrl_329799896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329799896.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1661917864.pdb -s /var/tmp/to_scwrl_1661917864.seq -o /var/tmp/from_scwrl_1661917864.pdb > /var/tmp/scwrl_1661917864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661917864.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_228213158.pdb -s /var/tmp/to_scwrl_228213158.seq -o /var/tmp/from_scwrl_228213158.pdb > /var/tmp/scwrl_228213158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_228213158.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1214293154.pdb -s /var/tmp/to_scwrl_1214293154.seq -o /var/tmp/from_scwrl_1214293154.pdb > /var/tmp/scwrl_1214293154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214293154.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1964128964.pdb -s /var/tmp/to_scwrl_1964128964.seq -o /var/tmp/from_scwrl_1964128964.pdb > /var/tmp/scwrl_1964128964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964128964.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_220166060.pdb -s /var/tmp/to_scwrl_220166060.seq -o /var/tmp/from_scwrl_220166060.pdb > /var/tmp/scwrl_220166060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220166060.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_504908367.pdb -s /var/tmp/to_scwrl_504908367.seq -o /var/tmp/from_scwrl_504908367.pdb > /var/tmp/scwrl_504908367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504908367.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_590577050.pdb -s /var/tmp/to_scwrl_590577050.seq -o /var/tmp/from_scwrl_590577050.pdb > /var/tmp/scwrl_590577050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590577050.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_558526455.pdb -s /var/tmp/to_scwrl_558526455.seq -o /var/tmp/from_scwrl_558526455.pdb > /var/tmp/scwrl_558526455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_558526455.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_63921876.pdb -s /var/tmp/to_scwrl_63921876.seq -o /var/tmp/from_scwrl_63921876.pdb > /var/tmp/scwrl_63921876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63921876.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1958834371.pdb -s /var/tmp/to_scwrl_1958834371.seq -o /var/tmp/from_scwrl_1958834371.pdb > /var/tmp/scwrl_1958834371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1958834371.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1687631415.pdb -s /var/tmp/to_scwrl_1687631415.seq -o /var/tmp/from_scwrl_1687631415.pdb > /var/tmp/scwrl_1687631415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1687631415.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_618496254.pdb -s /var/tmp/to_scwrl_618496254.seq -o /var/tmp/from_scwrl_618496254.pdb > /var/tmp/scwrl_618496254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_618496254.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_89843723.pdb -s /var/tmp/to_scwrl_89843723.seq -o /var/tmp/from_scwrl_89843723.pdb > /var/tmp/scwrl_89843723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_89843723.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1366503250.pdb -s /var/tmp/to_scwrl_1366503250.seq -o /var/tmp/from_scwrl_1366503250.pdb > /var/tmp/scwrl_1366503250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366503250.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1022668386.pdb -s /var/tmp/to_scwrl_1022668386.seq -o /var/tmp/from_scwrl_1022668386.pdb > /var/tmp/scwrl_1022668386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022668386.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_762978857.pdb -s /var/tmp/to_scwrl_762978857.seq -o /var/tmp/from_scwrl_762978857.pdb > /var/tmp/scwrl_762978857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762978857.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_822543094.pdb -s /var/tmp/to_scwrl_822543094.seq -o /var/tmp/from_scwrl_822543094.pdb > /var/tmp/scwrl_822543094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822543094.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_24987823.pdb -s /var/tmp/to_scwrl_24987823.seq -o /var/tmp/from_scwrl_24987823.pdb > /var/tmp/scwrl_24987823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_24987823.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1716838246.pdb -s /var/tmp/to_scwrl_1716838246.seq -o /var/tmp/from_scwrl_1716838246.pdb > /var/tmp/scwrl_1716838246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1716838246.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_636432104.pdb -s /var/tmp/to_scwrl_636432104.seq -o /var/tmp/from_scwrl_636432104.pdb > /var/tmp/scwrl_636432104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636432104.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_195085201.pdb -s /var/tmp/to_scwrl_195085201.seq -o /var/tmp/from_scwrl_195085201.pdb > /var/tmp/scwrl_195085201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_195085201.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1780625402.pdb -s /var/tmp/to_scwrl_1780625402.seq -o /var/tmp/from_scwrl_1780625402.pdb > /var/tmp/scwrl_1780625402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780625402.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_817403903.pdb -s /var/tmp/to_scwrl_817403903.seq -o /var/tmp/from_scwrl_817403903.pdb > /var/tmp/scwrl_817403903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_817403903.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1371485934.pdb -s /var/tmp/to_scwrl_1371485934.seq -o /var/tmp/from_scwrl_1371485934.pdb > /var/tmp/scwrl_1371485934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1371485934.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1075685735.pdb -s /var/tmp/to_scwrl_1075685735.seq -o /var/tmp/from_scwrl_1075685735.pdb > /var/tmp/scwrl_1075685735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075685735.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_255596715.pdb -s /var/tmp/to_scwrl_255596715.seq -o /var/tmp/from_scwrl_255596715.pdb > /var/tmp/scwrl_255596715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_255596715.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1952464714.pdb -s /var/tmp/to_scwrl_1952464714.seq -o /var/tmp/from_scwrl_1952464714.pdb > /var/tmp/scwrl_1952464714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1952464714.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1621935957.pdb -s /var/tmp/to_scwrl_1621935957.seq -o /var/tmp/from_scwrl_1621935957.pdb > /var/tmp/scwrl_1621935957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621935957.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2022129028.pdb -s /var/tmp/to_scwrl_2022129028.seq -o /var/tmp/from_scwrl_2022129028.pdb > /var/tmp/scwrl_2022129028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022129028.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2000149261.pdb -s /var/tmp/to_scwrl_2000149261.seq -o /var/tmp/from_scwrl_2000149261.pdb > /var/tmp/scwrl_2000149261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000149261.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1951735853.pdb -s /var/tmp/to_scwrl_1951735853.seq -o /var/tmp/from_scwrl_1951735853.pdb > /var/tmp/scwrl_1951735853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951735853.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1536563245.pdb -s /var/tmp/to_scwrl_1536563245.seq -o /var/tmp/from_scwrl_1536563245.pdb > /var/tmp/scwrl_1536563245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536563245.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_80878772.pdb -s /var/tmp/to_scwrl_80878772.seq -o /var/tmp/from_scwrl_80878772.pdb > /var/tmp/scwrl_80878772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80878772.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1018545361.pdb -s /var/tmp/to_scwrl_1018545361.seq -o /var/tmp/from_scwrl_1018545361.pdb > /var/tmp/scwrl_1018545361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1018545361.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1353208562.pdb -s /var/tmp/to_scwrl_1353208562.seq -o /var/tmp/from_scwrl_1353208562.pdb > /var/tmp/scwrl_1353208562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353208562.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_301044832.pdb -s /var/tmp/to_scwrl_301044832.seq -o /var/tmp/from_scwrl_301044832.pdb > /var/tmp/scwrl_301044832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301044832.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1523453727.pdb -s /var/tmp/to_scwrl_1523453727.seq -o /var/tmp/from_scwrl_1523453727.pdb > /var/tmp/scwrl_1523453727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1523453727.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1943785612.pdb -s /var/tmp/to_scwrl_1943785612.seq -o /var/tmp/from_scwrl_1943785612.pdb > /var/tmp/scwrl_1943785612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943785612.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_859571287.pdb -s /var/tmp/to_scwrl_859571287.seq -o /var/tmp/from_scwrl_859571287.pdb > /var/tmp/scwrl_859571287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859571287.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1587375604.pdb -s /var/tmp/to_scwrl_1587375604.seq -o /var/tmp/from_scwrl_1587375604.pdb > /var/tmp/scwrl_1587375604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587375604.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1755136336.pdb -s /var/tmp/to_scwrl_1755136336.seq -o /var/tmp/from_scwrl_1755136336.pdb > /var/tmp/scwrl_1755136336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755136336.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_399719056.pdb -s /var/tmp/to_scwrl_399719056.seq -o /var/tmp/from_scwrl_399719056.pdb > /var/tmp/scwrl_399719056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_399719056.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_58388211.pdb -s /var/tmp/to_scwrl_58388211.seq -o /var/tmp/from_scwrl_58388211.pdb > /var/tmp/scwrl_58388211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58388211.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1844980059.pdb -s /var/tmp/to_scwrl_1844980059.seq -o /var/tmp/from_scwrl_1844980059.pdb > /var/tmp/scwrl_1844980059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844980059.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1766222306.pdb -s /var/tmp/to_scwrl_1766222306.seq -o /var/tmp/from_scwrl_1766222306.pdb > /var/tmp/scwrl_1766222306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766222306.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1081056596.pdb -s /var/tmp/to_scwrl_1081056596.seq -o /var/tmp/from_scwrl_1081056596.pdb > /var/tmp/scwrl_1081056596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1081056596.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_460475270.pdb -s /var/tmp/to_scwrl_460475270.seq -o /var/tmp/from_scwrl_460475270.pdb > /var/tmp/scwrl_460475270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460475270.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_441281753.pdb -s /var/tmp/to_scwrl_441281753.seq -o /var/tmp/from_scwrl_441281753.pdb > /var/tmp/scwrl_441281753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441281753.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1106044420.pdb -s /var/tmp/to_scwrl_1106044420.seq -o /var/tmp/from_scwrl_1106044420.pdb > /var/tmp/scwrl_1106044420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1106044420.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_29829869.pdb -s /var/tmp/to_scwrl_29829869.seq -o /var/tmp/from_scwrl_29829869.pdb > /var/tmp/scwrl_29829869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29829869.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1077713856.pdb -s /var/tmp/to_scwrl_1077713856.seq -o /var/tmp/from_scwrl_1077713856.pdb > /var/tmp/scwrl_1077713856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077713856.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1301129621.pdb -s /var/tmp/to_scwrl_1301129621.seq -o /var/tmp/from_scwrl_1301129621.pdb > /var/tmp/scwrl_1301129621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1301129621.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1810455272.pdb -s /var/tmp/to_scwrl_1810455272.seq -o /var/tmp/from_scwrl_1810455272.pdb > /var/tmp/scwrl_1810455272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1810455272.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1895117760.pdb -s /var/tmp/to_scwrl_1895117760.seq -o /var/tmp/from_scwrl_1895117760.pdb > /var/tmp/scwrl_1895117760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895117760.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_525131910.pdb -s /var/tmp/to_scwrl_525131910.seq -o /var/tmp/from_scwrl_525131910.pdb > /var/tmp/scwrl_525131910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525131910.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_738657361.pdb -s /var/tmp/to_scwrl_738657361.seq -o /var/tmp/from_scwrl_738657361.pdb > /var/tmp/scwrl_738657361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738657361.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_3230828.pdb -s /var/tmp/to_scwrl_3230828.seq -o /var/tmp/from_scwrl_3230828.pdb > /var/tmp/scwrl_3230828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_3230828.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_330112977.pdb -s /var/tmp/to_scwrl_330112977.seq -o /var/tmp/from_scwrl_330112977.pdb > /var/tmp/scwrl_330112977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_330112977.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_213109671.pdb -s /var/tmp/to_scwrl_213109671.seq -o /var/tmp/from_scwrl_213109671.pdb > /var/tmp/scwrl_213109671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213109671.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2025359856.pdb -s /var/tmp/to_scwrl_2025359856.seq -o /var/tmp/from_scwrl_2025359856.pdb > /var/tmp/scwrl_2025359856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025359856.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_182778591.pdb -s /var/tmp/to_scwrl_182778591.seq -o /var/tmp/from_scwrl_182778591.pdb > /var/tmp/scwrl_182778591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_182778591.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_17361877.pdb -s /var/tmp/to_scwrl_17361877.seq -o /var/tmp/from_scwrl_17361877.pdb > /var/tmp/scwrl_17361877.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_17361877.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1414439455.pdb -s /var/tmp/to_scwrl_1414439455.seq -o /var/tmp/from_scwrl_1414439455.pdb > /var/tmp/scwrl_1414439455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414439455.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_263657363.pdb -s /var/tmp/to_scwrl_263657363.seq -o /var/tmp/from_scwrl_263657363.pdb > /var/tmp/scwrl_263657363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263657363.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1035907239.pdb -s /var/tmp/to_scwrl_1035907239.seq -o /var/tmp/from_scwrl_1035907239.pdb > /var/tmp/scwrl_1035907239.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035907239.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_620164371.pdb -s /var/tmp/to_scwrl_620164371.seq -o /var/tmp/from_scwrl_620164371.pdb > /var/tmp/scwrl_620164371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620164371.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_564702196.pdb -s /var/tmp/to_scwrl_564702196.seq -o /var/tmp/from_scwrl_564702196.pdb > /var/tmp/scwrl_564702196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_564702196.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_411877319.pdb -s /var/tmp/to_scwrl_411877319.seq -o /var/tmp/from_scwrl_411877319.pdb > /var/tmp/scwrl_411877319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411877319.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_416466337.pdb -s /var/tmp/to_scwrl_416466337.seq -o /var/tmp/from_scwrl_416466337.pdb > /var/tmp/scwrl_416466337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416466337.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1424273482.pdb -s /var/tmp/to_scwrl_1424273482.seq -o /var/tmp/from_scwrl_1424273482.pdb > /var/tmp/scwrl_1424273482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424273482.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1999252923.pdb -s /var/tmp/to_scwrl_1999252923.seq -o /var/tmp/from_scwrl_1999252923.pdb > /var/tmp/scwrl_1999252923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1999252923.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_24119026.pdb -s /var/tmp/to_scwrl_24119026.seq -o /var/tmp/from_scwrl_24119026.pdb > /var/tmp/scwrl_24119026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_24119026.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1823992538.pdb -s /var/tmp/to_scwrl_1823992538.seq -o /var/tmp/from_scwrl_1823992538.pdb > /var/tmp/scwrl_1823992538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1823992538.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2057641135.pdb -s /var/tmp/to_scwrl_2057641135.seq -o /var/tmp/from_scwrl_2057641135.pdb > /var/tmp/scwrl_2057641135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2057641135.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1869099086.pdb -s /var/tmp/to_scwrl_1869099086.seq -o /var/tmp/from_scwrl_1869099086.pdb > /var/tmp/scwrl_1869099086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1869099086.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1442731197.pdb -s /var/tmp/to_scwrl_1442731197.seq -o /var/tmp/from_scwrl_1442731197.pdb > /var/tmp/scwrl_1442731197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1442731197.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_991214085.pdb -s /var/tmp/to_scwrl_991214085.seq -o /var/tmp/from_scwrl_991214085.pdb > /var/tmp/scwrl_991214085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_991214085.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_182090709.pdb -s /var/tmp/to_scwrl_182090709.seq -o /var/tmp/from_scwrl_182090709.pdb > /var/tmp/scwrl_182090709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_182090709.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1884012950.pdb -s /var/tmp/to_scwrl_1884012950.seq -o /var/tmp/from_scwrl_1884012950.pdb > /var/tmp/scwrl_1884012950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884012950.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2097258505.pdb -s /var/tmp/to_scwrl_2097258505.seq -o /var/tmp/from_scwrl_2097258505.pdb > /var/tmp/scwrl_2097258505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097258505.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_211920578.pdb -s /var/tmp/to_scwrl_211920578.seq -o /var/tmp/from_scwrl_211920578.pdb > /var/tmp/scwrl_211920578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211920578.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_814243161.pdb -s /var/tmp/to_scwrl_814243161.seq -o /var/tmp/from_scwrl_814243161.pdb > /var/tmp/scwrl_814243161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_814243161.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1250904480.pdb -s /var/tmp/to_scwrl_1250904480.seq -o /var/tmp/from_scwrl_1250904480.pdb > /var/tmp/scwrl_1250904480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250904480.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2022375850.pdb -s /var/tmp/to_scwrl_2022375850.seq -o /var/tmp/from_scwrl_2022375850.pdb > /var/tmp/scwrl_2022375850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022375850.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_561877274.pdb -s /var/tmp/to_scwrl_561877274.seq -o /var/tmp/from_scwrl_561877274.pdb > /var/tmp/scwrl_561877274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561877274.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1776036390.pdb -s /var/tmp/to_scwrl_1776036390.seq -o /var/tmp/from_scwrl_1776036390.pdb > /var/tmp/scwrl_1776036390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776036390.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_613549565.pdb -s /var/tmp/to_scwrl_613549565.seq -o /var/tmp/from_scwrl_613549565.pdb > /var/tmp/scwrl_613549565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613549565.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_565108102.pdb -s /var/tmp/to_scwrl_565108102.seq -o /var/tmp/from_scwrl_565108102.pdb > /var/tmp/scwrl_565108102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565108102.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2106149367.pdb -s /var/tmp/to_scwrl_2106149367.seq -o /var/tmp/from_scwrl_2106149367.pdb > /var/tmp/scwrl_2106149367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2106149367.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_826659236.pdb -s /var/tmp/to_scwrl_826659236.seq -o /var/tmp/from_scwrl_826659236.pdb > /var/tmp/scwrl_826659236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_826659236.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_442984312.pdb -s /var/tmp/to_scwrl_442984312.seq -o /var/tmp/from_scwrl_442984312.pdb > /var/tmp/scwrl_442984312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442984312.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_141444312.pdb -s /var/tmp/to_scwrl_141444312.seq -o /var/tmp/from_scwrl_141444312.pdb > /var/tmp/scwrl_141444312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141444312.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_844021114.pdb -s /var/tmp/to_scwrl_844021114.seq -o /var/tmp/from_scwrl_844021114.pdb > /var/tmp/scwrl_844021114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_844021114.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1857423767.pdb -s /var/tmp/to_scwrl_1857423767.seq -o /var/tmp/from_scwrl_1857423767.pdb > /var/tmp/scwrl_1857423767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857423767.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_405101675.pdb -s /var/tmp/to_scwrl_405101675.seq -o /var/tmp/from_scwrl_405101675.pdb > /var/tmp/scwrl_405101675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405101675.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1879928352.pdb -s /var/tmp/to_scwrl_1879928352.seq -o /var/tmp/from_scwrl_1879928352.pdb > /var/tmp/scwrl_1879928352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879928352.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_330104491.pdb -s /var/tmp/to_scwrl_330104491.seq -o /var/tmp/from_scwrl_330104491.pdb > /var/tmp/scwrl_330104491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_330104491.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_969803871.pdb -s /var/tmp/to_scwrl_969803871.seq -o /var/tmp/from_scwrl_969803871.pdb > /var/tmp/scwrl_969803871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969803871.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_144322024.pdb -s /var/tmp/to_scwrl_144322024.seq -o /var/tmp/from_scwrl_144322024.pdb > /var/tmp/scwrl_144322024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144322024.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_746570828.pdb -s /var/tmp/to_scwrl_746570828.seq -o /var/tmp/from_scwrl_746570828.pdb > /var/tmp/scwrl_746570828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_746570828.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_246593707.pdb -s /var/tmp/to_scwrl_246593707.seq -o /var/tmp/from_scwrl_246593707.pdb > /var/tmp/scwrl_246593707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246593707.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2143574948.pdb -s /var/tmp/to_scwrl_2143574948.seq -o /var/tmp/from_scwrl_2143574948.pdb > /var/tmp/scwrl_2143574948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143574948.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_770689855.pdb -s /var/tmp/to_scwrl_770689855.seq -o /var/tmp/from_scwrl_770689855.pdb > /var/tmp/scwrl_770689855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770689855.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2070586245.pdb -s /var/tmp/to_scwrl_2070586245.seq -o /var/tmp/from_scwrl_2070586245.pdb > /var/tmp/scwrl_2070586245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070586245.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2053732436.pdb -s /var/tmp/to_scwrl_2053732436.seq -o /var/tmp/from_scwrl_2053732436.pdb > /var/tmp/scwrl_2053732436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2053732436.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_492305294.pdb -s /var/tmp/to_scwrl_492305294.seq -o /var/tmp/from_scwrl_492305294.pdb > /var/tmp/scwrl_492305294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_492305294.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1365833796.pdb -s /var/tmp/to_scwrl_1365833796.seq -o /var/tmp/from_scwrl_1365833796.pdb > /var/tmp/scwrl_1365833796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365833796.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_897462874.pdb -s /var/tmp/to_scwrl_897462874.seq -o /var/tmp/from_scwrl_897462874.pdb > /var/tmp/scwrl_897462874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897462874.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_674396003.pdb -s /var/tmp/to_scwrl_674396003.seq -o /var/tmp/from_scwrl_674396003.pdb > /var/tmp/scwrl_674396003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_674396003.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1102363099.pdb -s /var/tmp/to_scwrl_1102363099.seq -o /var/tmp/from_scwrl_1102363099.pdb > /var/tmp/scwrl_1102363099.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102363099.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_847237733.pdb -s /var/tmp/to_scwrl_847237733.seq -o /var/tmp/from_scwrl_847237733.pdb > /var/tmp/scwrl_847237733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847237733.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_886316581.pdb -s /var/tmp/to_scwrl_886316581.seq -o /var/tmp/from_scwrl_886316581.pdb > /var/tmp/scwrl_886316581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_886316581.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1916606260.pdb -s /var/tmp/to_scwrl_1916606260.seq -o /var/tmp/from_scwrl_1916606260.pdb > /var/tmp/scwrl_1916606260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916606260.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2098142213.pdb -s /var/tmp/to_scwrl_2098142213.seq -o /var/tmp/from_scwrl_2098142213.pdb > /var/tmp/scwrl_2098142213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2098142213.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_761208785.pdb -s /var/tmp/to_scwrl_761208785.seq -o /var/tmp/from_scwrl_761208785.pdb > /var/tmp/scwrl_761208785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_761208785.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_330999887.pdb -s /var/tmp/to_scwrl_330999887.seq -o /var/tmp/from_scwrl_330999887.pdb > /var/tmp/scwrl_330999887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_330999887.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1726694956.pdb -s /var/tmp/to_scwrl_1726694956.seq -o /var/tmp/from_scwrl_1726694956.pdb > /var/tmp/scwrl_1726694956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1726694956.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1374758349.pdb -s /var/tmp/to_scwrl_1374758349.seq -o /var/tmp/from_scwrl_1374758349.pdb > /var/tmp/scwrl_1374758349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1374758349.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_896107990.pdb -s /var/tmp/to_scwrl_896107990.seq -o /var/tmp/from_scwrl_896107990.pdb > /var/tmp/scwrl_896107990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_896107990.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1685360676.pdb -s /var/tmp/to_scwrl_1685360676.seq -o /var/tmp/from_scwrl_1685360676.pdb > /var/tmp/scwrl_1685360676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685360676.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_53933938.pdb -s /var/tmp/to_scwrl_53933938.seq -o /var/tmp/from_scwrl_53933938.pdb > /var/tmp/scwrl_53933938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53933938.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1339092301.pdb -s /var/tmp/to_scwrl_1339092301.seq -o /var/tmp/from_scwrl_1339092301.pdb > /var/tmp/scwrl_1339092301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1339092301.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1826804988.pdb -s /var/tmp/to_scwrl_1826804988.seq -o /var/tmp/from_scwrl_1826804988.pdb > /var/tmp/scwrl_1826804988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826804988.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_897955052.pdb -s /var/tmp/to_scwrl_897955052.seq -o /var/tmp/from_scwrl_897955052.pdb > /var/tmp/scwrl_897955052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897955052.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1049032422.pdb -s /var/tmp/to_scwrl_1049032422.seq -o /var/tmp/from_scwrl_1049032422.pdb > /var/tmp/scwrl_1049032422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1049032422.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_84423017.pdb -s /var/tmp/to_scwrl_84423017.seq -o /var/tmp/from_scwrl_84423017.pdb > /var/tmp/scwrl_84423017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_84423017.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_630399757.pdb -s /var/tmp/to_scwrl_630399757.seq -o /var/tmp/from_scwrl_630399757.pdb > /var/tmp/scwrl_630399757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_630399757.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1379136912.pdb -s /var/tmp/to_scwrl_1379136912.seq -o /var/tmp/from_scwrl_1379136912.pdb > /var/tmp/scwrl_1379136912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1379136912.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1054226888.pdb -s /var/tmp/to_scwrl_1054226888.seq -o /var/tmp/from_scwrl_1054226888.pdb > /var/tmp/scwrl_1054226888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1054226888.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_774721782.pdb -s /var/tmp/to_scwrl_774721782.seq -o /var/tmp/from_scwrl_774721782.pdb > /var/tmp/scwrl_774721782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774721782.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2125707741.pdb -s /var/tmp/to_scwrl_2125707741.seq -o /var/tmp/from_scwrl_2125707741.pdb > /var/tmp/scwrl_2125707741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125707741.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1300820594.pdb -s /var/tmp/to_scwrl_1300820594.seq -o /var/tmp/from_scwrl_1300820594.pdb > /var/tmp/scwrl_1300820594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300820594.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_770813083.pdb -s /var/tmp/to_scwrl_770813083.seq -o /var/tmp/from_scwrl_770813083.pdb > /var/tmp/scwrl_770813083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770813083.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_748913949.pdb -s /var/tmp/to_scwrl_748913949.seq -o /var/tmp/from_scwrl_748913949.pdb > /var/tmp/scwrl_748913949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_748913949.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1223923193.pdb -s /var/tmp/to_scwrl_1223923193.seq -o /var/tmp/from_scwrl_1223923193.pdb > /var/tmp/scwrl_1223923193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1223923193.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_677061872.pdb -s /var/tmp/to_scwrl_677061872.seq -o /var/tmp/from_scwrl_677061872.pdb > /var/tmp/scwrl_677061872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_677061872.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1241219242.pdb -s /var/tmp/to_scwrl_1241219242.seq -o /var/tmp/from_scwrl_1241219242.pdb > /var/tmp/scwrl_1241219242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241219242.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_442273343.pdb -s /var/tmp/to_scwrl_442273343.seq -o /var/tmp/from_scwrl_442273343.pdb > /var/tmp/scwrl_442273343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442273343.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1574524745.pdb -s /var/tmp/to_scwrl_1574524745.seq -o /var/tmp/from_scwrl_1574524745.pdb > /var/tmp/scwrl_1574524745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1574524745.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1915615245.pdb -s /var/tmp/to_scwrl_1915615245.seq -o /var/tmp/from_scwrl_1915615245.pdb > /var/tmp/scwrl_1915615245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915615245.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1544636442.pdb -s /var/tmp/to_scwrl_1544636442.seq -o /var/tmp/from_scwrl_1544636442.pdb > /var/tmp/scwrl_1544636442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544636442.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_274278831.pdb -s /var/tmp/to_scwrl_274278831.seq -o /var/tmp/from_scwrl_274278831.pdb > /var/tmp/scwrl_274278831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274278831.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_654448179.pdb -s /var/tmp/to_scwrl_654448179.seq -o /var/tmp/from_scwrl_654448179.pdb > /var/tmp/scwrl_654448179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_654448179.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1313759056.pdb -s /var/tmp/to_scwrl_1313759056.seq -o /var/tmp/from_scwrl_1313759056.pdb > /var/tmp/scwrl_1313759056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313759056.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_224937397.pdb -s /var/tmp/to_scwrl_224937397.seq -o /var/tmp/from_scwrl_224937397.pdb > /var/tmp/scwrl_224937397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_224937397.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1415656963.pdb -s /var/tmp/to_scwrl_1415656963.seq -o /var/tmp/from_scwrl_1415656963.pdb > /var/tmp/scwrl_1415656963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415656963.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1644758943.pdb -s /var/tmp/to_scwrl_1644758943.seq -o /var/tmp/from_scwrl_1644758943.pdb > /var/tmp/scwrl_1644758943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644758943.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1951632353.pdb -s /var/tmp/to_scwrl_1951632353.seq -o /var/tmp/from_scwrl_1951632353.pdb > /var/tmp/scwrl_1951632353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951632353.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_642931666.pdb -s /var/tmp/to_scwrl_642931666.seq -o /var/tmp/from_scwrl_642931666.pdb > /var/tmp/scwrl_642931666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642931666.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_393383286.pdb -s /var/tmp/to_scwrl_393383286.seq -o /var/tmp/from_scwrl_393383286.pdb > /var/tmp/scwrl_393383286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_393383286.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1489509383.pdb -s /var/tmp/to_scwrl_1489509383.seq -o /var/tmp/from_scwrl_1489509383.pdb > /var/tmp/scwrl_1489509383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489509383.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_696865605.pdb -s /var/tmp/to_scwrl_696865605.seq -o /var/tmp/from_scwrl_696865605.pdb > /var/tmp/scwrl_696865605.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696865605.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1732475587.pdb -s /var/tmp/to_scwrl_1732475587.seq -o /var/tmp/from_scwrl_1732475587.pdb > /var/tmp/scwrl_1732475587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732475587.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1168830724.pdb -s /var/tmp/to_scwrl_1168830724.seq -o /var/tmp/from_scwrl_1168830724.pdb > /var/tmp/scwrl_1168830724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1168830724.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1594820656.pdb -s /var/tmp/to_scwrl_1594820656.seq -o /var/tmp/from_scwrl_1594820656.pdb > /var/tmp/scwrl_1594820656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1594820656.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_634024362.pdb -s /var/tmp/to_scwrl_634024362.seq -o /var/tmp/from_scwrl_634024362.pdb > /var/tmp/scwrl_634024362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634024362.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1253253741.pdb -s /var/tmp/to_scwrl_1253253741.seq -o /var/tmp/from_scwrl_1253253741.pdb > /var/tmp/scwrl_1253253741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1253253741.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_77736767.pdb -s /var/tmp/to_scwrl_77736767.seq -o /var/tmp/from_scwrl_77736767.pdb > /var/tmp/scwrl_77736767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77736767.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2013161275.pdb -s /var/tmp/to_scwrl_2013161275.seq -o /var/tmp/from_scwrl_2013161275.pdb > /var/tmp/scwrl_2013161275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2013161275.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_159996983.pdb -s /var/tmp/to_scwrl_159996983.seq -o /var/tmp/from_scwrl_159996983.pdb > /var/tmp/scwrl_159996983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_159996983.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)G90.O and (T0292)D91.N only 0.000 apart, marking (T0292)D91.N as missing WARNING: atoms too close: (T0292)L92.O and (T0292)A93.N only 0.000 apart, marking (T0292)A93.N as missing WARNING: atoms too close: (T0292)S199.O and (T0292)L200.N only 0.000 apart, marking (T0292)L200.N as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_852458549.pdb -s /var/tmp/to_scwrl_852458549.seq -o /var/tmp/from_scwrl_852458549.pdb > /var/tmp/scwrl_852458549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852458549.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1991385369.pdb -s /var/tmp/to_scwrl_1991385369.seq -o /var/tmp/from_scwrl_1991385369.pdb > /var/tmp/scwrl_1991385369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991385369.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1460817577.pdb -s /var/tmp/to_scwrl_1460817577.seq -o /var/tmp/from_scwrl_1460817577.pdb > /var/tmp/scwrl_1460817577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460817577.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1623271631.pdb -s /var/tmp/to_scwrl_1623271631.seq -o /var/tmp/from_scwrl_1623271631.pdb > /var/tmp/scwrl_1623271631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623271631.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_592815671.pdb -s /var/tmp/to_scwrl_592815671.seq -o /var/tmp/from_scwrl_592815671.pdb > /var/tmp/scwrl_592815671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592815671.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_537257124.pdb -s /var/tmp/to_scwrl_537257124.seq -o /var/tmp/from_scwrl_537257124.pdb > /var/tmp/scwrl_537257124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_537257124.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_152849856.pdb -s /var/tmp/to_scwrl_152849856.seq -o /var/tmp/from_scwrl_152849856.pdb > /var/tmp/scwrl_152849856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152849856.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1834034913.pdb -s /var/tmp/to_scwrl_1834034913.seq -o /var/tmp/from_scwrl_1834034913.pdb > /var/tmp/scwrl_1834034913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1834034913.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_979530467.pdb -s /var/tmp/to_scwrl_979530467.seq -o /var/tmp/from_scwrl_979530467.pdb > /var/tmp/scwrl_979530467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979530467.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1727374601.pdb -s /var/tmp/to_scwrl_1727374601.seq -o /var/tmp/from_scwrl_1727374601.pdb > /var/tmp/scwrl_1727374601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1727374601.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1602166511.pdb -s /var/tmp/to_scwrl_1602166511.seq -o /var/tmp/from_scwrl_1602166511.pdb > /var/tmp/scwrl_1602166511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602166511.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_376683263.pdb -s /var/tmp/to_scwrl_376683263.seq -o /var/tmp/from_scwrl_376683263.pdb > /var/tmp/scwrl_376683263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_376683263.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2001653433.pdb -s /var/tmp/to_scwrl_2001653433.seq -o /var/tmp/from_scwrl_2001653433.pdb > /var/tmp/scwrl_2001653433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001653433.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_109131043.pdb -s /var/tmp/to_scwrl_109131043.seq -o /var/tmp/from_scwrl_109131043.pdb > /var/tmp/scwrl_109131043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_109131043.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1690442319.pdb -s /var/tmp/to_scwrl_1690442319.seq -o /var/tmp/from_scwrl_1690442319.pdb > /var/tmp/scwrl_1690442319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690442319.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_79107183.pdb -s /var/tmp/to_scwrl_79107183.seq -o /var/tmp/from_scwrl_79107183.pdb > /var/tmp/scwrl_79107183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_79107183.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1524788007.pdb -s /var/tmp/to_scwrl_1524788007.seq -o /var/tmp/from_scwrl_1524788007.pdb > /var/tmp/scwrl_1524788007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1524788007.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1187717615.pdb -s /var/tmp/to_scwrl_1187717615.seq -o /var/tmp/from_scwrl_1187717615.pdb > /var/tmp/scwrl_1187717615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1187717615.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 64.8501 sec, elapsed time= 1033.36 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -76.1913 shub_TS1 costs 0 real_cost = -64.8349 nFOLD_TS5-scwrl costs 0 real_cost = -62.5245 nFOLD_TS5 costs 0 real_cost = 81.4106 nFOLD_TS4-scwrl costs 0 real_cost = -5.36614 nFOLD_TS4 costs 0 real_cost = 135.493 nFOLD_TS3-scwrl costs 0 real_cost = -67.5019 nFOLD_TS3 costs 0 real_cost = 82.3969 nFOLD_TS2-scwrl costs 0 real_cost = -30.3245 nFOLD_TS2 costs 0 real_cost = 131.737 nFOLD_TS1-scwrl costs 0 real_cost = -38.9333 nFOLD_TS1 costs 0 real_cost = 117.856 mGen-3D_TS1-scwrl costs 0 real_cost = -72.9135 mGen-3D_TS1 costs 0 real_cost = 73.8125 keasar-server_TS5-scwrl costs 0 real_cost = -79.4061 keasar-server_TS5 costs 0 real_cost = -82.0952 keasar-server_TS4-scwrl costs 0 real_cost = -60.2199 keasar-server_TS4 costs 0 real_cost = -60.5395 keasar-server_TS3-scwrl costs 0 real_cost = -70.2301 keasar-server_TS3 costs 0 real_cost = -63.8099 keasar-server_TS2-scwrl costs 0 real_cost = -76.0843 keasar-server_TS2 costs 0 real_cost = -73.9518 keasar-server_TS1-scwrl costs 0 real_cost = -81.4358 keasar-server_TS1 costs 0 real_cost = -81.5584 karypis.srv_TS5-scwrl costs 0 real_cost = -103.725 karypis.srv_TS5 costs 0 real_cost = -102.95 karypis.srv_TS4-scwrl costs 0 real_cost = -78.0796 karypis.srv_TS4 costs 0 real_cost = -78.055 karypis.srv_TS3-scwrl costs 0 real_cost = -84.1785 karypis.srv_TS3 costs 0 real_cost = -83.6176 karypis.srv_TS2-scwrl costs 0 real_cost = -66.5204 karypis.srv_TS2 costs 0 real_cost = -67.249 karypis.srv_TS1-scwrl costs 0 real_cost = -90.6862 karypis.srv_TS1 costs 0 real_cost = -94.8253 karypis.srv.4_TS1-scwrl costs 0 real_cost = 325.331 karypis.srv.4_TS1 costs 0 real_cost = 329.979 karypis.srv.2_TS5-scwrl costs 0 real_cost = 337.942 karypis.srv.2_TS5 costs 0 real_cost = 337.943 karypis.srv.2_TS4-scwrl costs 0 real_cost = 329.636 karypis.srv.2_TS4 costs 0 real_cost = 329.636 karypis.srv.2_TS3-scwrl costs 0 real_cost = 327.021 karypis.srv.2_TS3 costs 0 real_cost = 327.021 karypis.srv.2_TS2-scwrl costs 0 real_cost = -97.2242 karypis.srv.2_TS2 costs 0 real_cost = -97.2242 karypis.srv.2_TS1-scwrl costs 0 real_cost = -108.845 karypis.srv.2_TS1 costs 0 real_cost = -108.845 gtg_AL5-scwrl costs 0 real_cost = 0.432714 gtg_AL5 costs 0 real_cost = 170.048 gtg_AL4-scwrl costs 0 real_cost = -17.4596 gtg_AL4 costs 0 real_cost = 159.417 gtg_AL3-scwrl costs 0 real_cost = -69.6434 gtg_AL3 costs 0 real_cost = 119.289 gtg_AL2-scwrl costs 0 real_cost = -48.2943 gtg_AL2 costs 0 real_cost = 136.464 gtg_AL1-scwrl costs 0 real_cost = -45.9537 gtg_AL1 costs 0 real_cost = 128.596 forecast-s_AL5-scwrl costs 0 real_cost = 11.797 forecast-s_AL5 costs 0 real_cost = 181.93 forecast-s_AL4-scwrl costs 0 real_cost = -45.477 forecast-s_AL4 costs 0 real_cost = 144.069 forecast-s_AL3-scwrl costs 0 real_cost = -75.4037 forecast-s_AL3 costs 0 real_cost = 122.136 forecast-s_AL2-scwrl costs 0 real_cost = -43.4018 forecast-s_AL2 costs 0 real_cost = 150.673 forecast-s_AL1-scwrl costs 0 real_cost = -56.2071 forecast-s_AL1 costs 0 real_cost = 123.661 beautshotbase_TS1-scwrl costs 0 real_cost = -89.8428 beautshotbase_TS1 costs 0 real_cost = -82.2432 beautshot_TS1-scwrl costs 0 real_cost = -86.8611 beautshot_TS1 costs 0 real_cost = -76.308 Zhang-Server_TS5-scwrl costs 0 real_cost = -147.833 Zhang-Server_TS5 costs 0 real_cost = -140.155 Zhang-Server_TS4-scwrl costs 0 real_cost = -150.665 Zhang-Server_TS4 costs 0 real_cost = -142.382 Zhang-Server_TS3-scwrl costs 0 real_cost = -100.904 Zhang-Server_TS3 costs 0 real_cost = -90.8844 Zhang-Server_TS2-scwrl costs 0 real_cost = -77.9503 Zhang-Server_TS2 costs 0 real_cost = -75.6868 Zhang-Server_TS1-scwrl costs 0 real_cost = -137.988 Zhang-Server_TS1 costs 0 real_cost = -136 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -31.6759 UNI-EID_sfst_AL5 costs 0 real_cost = 161.176 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -51.6945 UNI-EID_sfst_AL4 costs 0 real_cost = 135.683 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -52.2363 UNI-EID_sfst_AL3 costs 0 real_cost = 131.487 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 30.9794 UNI-EID_sfst_AL2 costs 0 real_cost = 207.158 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 31.8947 UNI-EID_sfst_AL1 costs 0 real_cost = 212.182 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 73.8381 UNI-EID_expm_TS1 costs 0 real_cost = 73.8397 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -34.6006 UNI-EID_bnmx_TS5 costs 0 real_cost = 161.728 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -60.4439 UNI-EID_bnmx_TS4 costs 0 real_cost = 134.326 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -50.614 UNI-EID_bnmx_TS3 costs 0 real_cost = 131.245 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 33.31 UNI-EID_bnmx_TS2 costs 0 real_cost = 213.739 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 29.3953 UNI-EID_bnmx_TS1 costs 0 real_cost = 209.092 SPARKS2_TS5-scwrl costs 0 real_cost = -93.9609 SPARKS2_TS5 costs 0 real_cost = -96.3635 SPARKS2_TS4-scwrl costs 0 real_cost = -71.1772 SPARKS2_TS4 costs 0 real_cost = -63.5056 SPARKS2_TS3-scwrl costs 0 real_cost = -88.6483 SPARKS2_TS3 costs 0 real_cost = -83.3265 SPARKS2_TS2-scwrl costs 0 real_cost = -121.38 SPARKS2_TS2 costs 0 real_cost = -113.228 SPARKS2_TS1-scwrl costs 0 real_cost = -61.132 SPARKS2_TS1 costs 0 real_cost = -52.4283 SP4_TS5-scwrl costs 0 real_cost = -107.082 SP4_TS5 costs 0 real_cost = -102.792 SP4_TS4-scwrl costs 0 real_cost = -92.0221 SP4_TS4 costs 0 real_cost = -91.3801 SP4_TS3-scwrl costs 0 real_cost = -58.5161 SP4_TS3 costs 0 real_cost = -47.6195 SP4_TS2-scwrl costs 0 real_cost = -102.979 SP4_TS2 costs 0 real_cost = -104.393 SP4_TS1-scwrl costs 0 real_cost = -105.72 SP4_TS1 costs 0 real_cost = -94.1017 SP3_TS5-scwrl costs 0 real_cost = -58.2321 SP3_TS5 costs 0 real_cost = -50.7306 SP3_TS4-scwrl costs 0 real_cost = -90.0985 SP3_TS4 costs 0 real_cost = -86.6486 SP3_TS3-scwrl costs 0 real_cost = -96.6488 SP3_TS3 costs 0 real_cost = -99.0289 SP3_TS2-scwrl costs 0 real_cost = -100.157 SP3_TS2 costs 0 real_cost = -93.2858 SP3_TS1-scwrl costs 0 real_cost = -110.888 SP3_TS1 costs 0 real_cost = -99.9836 SAM_T06_server_TS5-scwrl costs 0 real_cost = -23.5666 SAM_T06_server_TS5 costs 0 real_cost = -58.5099 SAM_T06_server_TS4-scwrl costs 0 real_cost = -94.2667 SAM_T06_server_TS4 costs 0 real_cost = -121.214 SAM_T06_server_TS3-scwrl costs 0 real_cost = 35.8055 SAM_T06_server_TS3 costs 0 real_cost = -23.4368 SAM_T06_server_TS2-scwrl costs 0 real_cost = 242.187 SAM_T06_server_TS2 costs 0 real_cost = 111.043 SAM_T06_server_TS1-scwrl costs 0 real_cost = -110.458 SAM_T06_server_TS1 costs 0 real_cost = -109.247 SAM-T99_AL5-scwrl costs 0 real_cost = -60.5698 SAM-T99_AL5 costs 0 real_cost = 107.413 SAM-T99_AL4-scwrl costs 0 real_cost = -39.1319 SAM-T99_AL4 costs 0 real_cost = 120.834 SAM-T99_AL3-scwrl costs 0 real_cost = -37.8178 SAM-T99_AL3 costs 0 real_cost = 121.221 SAM-T99_AL2-scwrl costs 0 real_cost = -37.9593 SAM-T99_AL2 costs 0 real_cost = 124.534 SAM-T99_AL1-scwrl costs 0 real_cost = -35.5391 SAM-T99_AL1 costs 0 real_cost = 124.577 SAM-T02_AL5-scwrl costs 0 real_cost = 31.3791 SAM-T02_AL5 costs 0 real_cost = 217.851 SAM-T02_AL4-scwrl costs 0 real_cost = -31.6878 SAM-T02_AL4 costs 0 real_cost = 150.555 SAM-T02_AL3-scwrl costs 0 real_cost = -54.3566 SAM-T02_AL3 costs 0 real_cost = 130.014 SAM-T02_AL2-scwrl costs 0 real_cost = -54.6253 SAM-T02_AL2 costs 0 real_cost = 133.86 SAM-T02_AL1-scwrl costs 0 real_cost = -85.8432 SAM-T02_AL1 costs 0 real_cost = 97.8518 ROKKY_TS5-scwrl costs 0 real_cost = -72.4191 ROKKY_TS5 costs 0 real_cost = -67.2142 ROKKY_TS4-scwrl costs 0 real_cost = -65.9509 ROKKY_TS4 costs 0 real_cost = -59.737 ROKKY_TS3-scwrl costs 0 real_cost = -62.2922 ROKKY_TS3 costs 0 real_cost = -58.7006 ROKKY_TS2-scwrl costs 0 real_cost = -111.767 ROKKY_TS2 costs 0 real_cost = -102.284 ROKKY_TS1-scwrl costs 0 real_cost = -86.0811 ROKKY_TS1 costs 0 real_cost = -80.0367 ROBETTA_TS5-scwrl costs 0 real_cost = -113.109 ROBETTA_TS5 costs 0 real_cost = -113.982 ROBETTA_TS4-scwrl costs 0 real_cost = -113.473 ROBETTA_TS4 costs 0 real_cost = -114.142 ROBETTA_TS3-scwrl costs 0 real_cost = -106.793 ROBETTA_TS3 costs 0 real_cost = -105.417 ROBETTA_TS2-scwrl costs 0 real_cost = -127.895 ROBETTA_TS2 costs 0 real_cost = -127.184 ROBETTA_TS1-scwrl costs 0 real_cost = -117.759 ROBETTA_TS1 costs 0 real_cost = -116.974 RAPTOR_TS5-scwrl costs 0 real_cost = -81.3237 RAPTOR_TS5 costs 0 real_cost = -83.1982 RAPTOR_TS4-scwrl costs 0 real_cost = -106.787 RAPTOR_TS4 costs 0 real_cost = -105.761 RAPTOR_TS3-scwrl costs 0 real_cost = -63.4685 RAPTOR_TS3 costs 0 real_cost = -56.6602 RAPTOR_TS2-scwrl costs 0 real_cost = -101.986 RAPTOR_TS2 costs 0 real_cost = -102.974 RAPTOR_TS1-scwrl costs 0 real_cost = -111.913 RAPTOR_TS1 costs 0 real_cost = -109.013 RAPTORESS_TS5-scwrl costs 0 real_cost = -77.7201 RAPTORESS_TS5 costs 0 real_cost = -77.6575 RAPTORESS_TS4-scwrl costs 0 real_cost = -81.8598 RAPTORESS_TS4 costs 0 real_cost = -78.9481 RAPTORESS_TS3-scwrl costs 0 real_cost = -90.5679 RAPTORESS_TS3 costs 0 real_cost = -90.3057 RAPTORESS_TS2-scwrl costs 0 real_cost = -16.4039 RAPTORESS_TS2 costs 0 real_cost = -9.1345 RAPTORESS_TS1-scwrl costs 0 real_cost = -56.8548 RAPTORESS_TS1 costs 0 real_cost = -52.4245 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -113.632 RAPTOR-ACE_TS5 costs 0 real_cost = -107.7 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -103.199 RAPTOR-ACE_TS4 costs 0 real_cost = -90.9367 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -108.173 RAPTOR-ACE_TS3 costs 0 real_cost = -102.262 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -110.888 RAPTOR-ACE_TS2 costs 0 real_cost = -99.9836 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -107.2 RAPTOR-ACE_TS1 costs 0 real_cost = -93.9294 Pmodeller6_TS5-scwrl costs 0 real_cost = -72.4413 Pmodeller6_TS5 costs 0 real_cost = -76.7244 Pmodeller6_TS4-scwrl costs 0 real_cost = -101.576 Pmodeller6_TS4 costs 0 real_cost = -104.913 Pmodeller6_TS3-scwrl costs 0 real_cost = -91.561 Pmodeller6_TS3 costs 0 real_cost = -91.6758 Pmodeller6_TS2-scwrl costs 0 real_cost = -89.6271 Pmodeller6_TS2 costs 0 real_cost = -88.1626 Pmodeller6_TS1-scwrl costs 0 real_cost = -89.6271 Pmodeller6_TS1 costs 0 real_cost = -88.1626 Phyre-2_TS5-scwrl costs 0 real_cost = -68.7034 Phyre-2_TS5 costs 0 real_cost = -81.6463 Phyre-2_TS4-scwrl costs 0 real_cost = -72.4404 Phyre-2_TS4 costs 0 real_cost = -88.9984 Phyre-2_TS3-scwrl costs 0 real_cost = -67.8152 Phyre-2_TS3 costs 0 real_cost = -82.5853 Phyre-2_TS2-scwrl costs 0 real_cost = -72.3686 Phyre-2_TS2 costs 0 real_cost = -88.5194 Phyre-2_TS1-scwrl costs 0 real_cost = -72.6865 Phyre-2_TS1 costs 0 real_cost = -76.4708 Phyre-1_TS1-scwrl costs 0 real_cost = 63.2222 Phyre-1_TS1 costs 0 real_cost = 32.2742 Pcons6_TS5-scwrl costs 0 real_cost = -101.132 Pcons6_TS5 costs 0 real_cost = -101.132 Pcons6_TS4-scwrl costs 0 real_cost = -103.689 Pcons6_TS4 costs 0 real_cost = -103.777 Pcons6_TS3-scwrl costs 0 real_cost = -42.7856 Pcons6_TS3 costs 0 real_cost = -40.9262 Pcons6_TS2-scwrl costs 0 real_cost = -105.17 Pcons6_TS2 costs 0 real_cost = -108.35 Pcons6_TS1-scwrl costs 0 real_cost = -100.154 Pcons6_TS1 costs 0 real_cost = -104.042 PROTINFO_TS5-scwrl costs 0 real_cost = -51.75 PROTINFO_TS5 costs 0 real_cost = -45.1262 PROTINFO_TS4-scwrl costs 0 real_cost = -19.6646 PROTINFO_TS4 costs 0 real_cost = -16.7842 PROTINFO_TS3-scwrl costs 0 real_cost = -92.8215 PROTINFO_TS3 costs 0 real_cost = -92.0458 PROTINFO_TS2-scwrl costs 0 real_cost = -82.8121 PROTINFO_TS2 costs 0 real_cost = -89.0499 PROTINFO_TS1-scwrl costs 0 real_cost = -100.567 PROTINFO_TS1 costs 0 real_cost = -104.36 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -50.2091 PROTINFO-AB_TS5 costs 0 real_cost = -49.6385 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -49.2594 PROTINFO-AB_TS4 costs 0 real_cost = -45.4162 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -39.4268 PROTINFO-AB_TS3 costs 0 real_cost = -37.2071 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -41.1643 PROTINFO-AB_TS2 costs 0 real_cost = -43.0655 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -50.9778 PROTINFO-AB_TS1 costs 0 real_cost = -45.5377 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -52.9184 NN_PUT_lab_TS1 costs 0 real_cost = -53.63 MetaTasser_TS5-scwrl costs 0 real_cost = 291.235 MetaTasser_TS5 costs 0 real_cost = 292.894 MetaTasser_TS4-scwrl costs 0 real_cost = 48.8865 MetaTasser_TS4 costs 0 real_cost = 44.3826 MetaTasser_TS3-scwrl costs 0 real_cost = 91.0969 MetaTasser_TS3 costs 0 real_cost = 95.0777 MetaTasser_TS2-scwrl costs 0 real_cost = 264.079 MetaTasser_TS2 costs 0 real_cost = 270.972 MetaTasser_TS1-scwrl costs 0 real_cost = 64.014 MetaTasser_TS1 costs 0 real_cost = 77.9893 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -38.4774 Ma-OPUS-server_TS5 costs 0 real_cost = -37.634 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -105.662 Ma-OPUS-server_TS4 costs 0 real_cost = -103.92 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -44.3468 Ma-OPUS-server_TS3 costs 0 real_cost = -45.1552 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -94.5573 Ma-OPUS-server_TS2 costs 0 real_cost = -84.9673 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -104.357 Ma-OPUS-server_TS1 costs 0 real_cost = -96.8238 MIG_FROST_AL1-scwrl costs 0 real_cost = -62.7371 MIG_FROST_AL1 costs 0 real_cost = -62.7371 LOOPP_TS5 costs 0 real_cost = -63.2027 LOOPP_TS4-scwrl costs 0 real_cost = -101.827 LOOPP_TS4 costs 0 real_cost = -93.2882 LOOPP_TS3-scwrl costs 0 real_cost = -132.508 LOOPP_TS3 costs 0 real_cost = -129.715 LOOPP_TS2-scwrl costs 0 real_cost = -20.0021 LOOPP_TS2 costs 0 real_cost = -14.4893 LOOPP_TS1-scwrl costs 0 real_cost = -43.9561 LOOPP_TS1 costs 0 real_cost = -39.9862 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 1.31162 Huber-Torda-Server_TS5 costs 0 real_cost = 135.305 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -28.483 Huber-Torda-Server_TS4 costs 0 real_cost = 108.715 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -52.6108 Huber-Torda-Server_TS3 costs 0 real_cost = 92.0836 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -23.6096 Huber-Torda-Server_TS2 costs 0 real_cost = 110.743 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -112.133 Huber-Torda-Server_TS1 costs 0 real_cost = 35.1704 HHpred3_TS1-scwrl costs 0 real_cost = -98.5882 HHpred3_TS1 costs 0 real_cost = -97.0722 HHpred2_TS1-scwrl costs 0 real_cost = -98.5882 HHpred2_TS1 costs 0 real_cost = -97.0722 HHpred1_TS1-scwrl costs 0 real_cost = -112.953 HHpred1_TS1 costs 0 real_cost = -108.27 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -104.947 GeneSilicoMetaServer_TS5 costs 0 real_cost = -104.183 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -88.7595 GeneSilicoMetaServer_TS3 costs 0 real_cost = -83.4685 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -106.406 GeneSilicoMetaServer_TS2 costs 0 real_cost = -95.8876 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -138.283 GeneSilicoMetaServer_TS1 costs 0 real_cost = -133.463 Frankenstein_TS2-scwrl costs 0 real_cost = -140.357 Frankenstein_TS2 costs 0 real_cost = -132.671 Frankenstein_TS1-scwrl costs 0 real_cost = -92.45 Frankenstein_TS1 costs 0 real_cost = -88.6274 FUNCTION_TS5-scwrl costs 0 real_cost = -74.3242 FUNCTION_TS5 costs 0 real_cost = -79.2544 FUNCTION_TS4-scwrl costs 0 real_cost = -68.5149 FUNCTION_TS4 costs 0 real_cost = -72.576 FUNCTION_TS3-scwrl costs 0 real_cost = -74.9157 FUNCTION_TS3 costs 0 real_cost = -79.8151 FUNCTION_TS2-scwrl costs 0 real_cost = -76.204 FUNCTION_TS2 costs 0 real_cost = -87.4881 FUNCTION_TS1-scwrl costs 0 real_cost = -71.8778 FUNCTION_TS1 costs 0 real_cost = -73.2513 FUGUE_AL5-scwrl costs 0 real_cost = -100.662 FUGUE_AL5 costs 0 real_cost = 100.761 FUGUE_AL4-scwrl costs 0 real_cost = -60.3573 FUGUE_AL4 costs 0 real_cost = 137.775 FUGUE_AL3-scwrl costs 0 real_cost = -45.4884 FUGUE_AL3 costs 0 real_cost = 152.795 FUGUE_AL2-scwrl costs 0 real_cost = 234.85 FUGUE_AL2 costs 0 real_cost = 344.431 FUGUE_AL1-scwrl costs 0 real_cost = 46.9959 FUGUE_AL1 costs 0 real_cost = 209.15 FUGMOD_TS5-scwrl costs 0 real_cost = -116.297 FUGMOD_TS5 costs 0 real_cost = -122.772 FUGMOD_TS4-scwrl costs 0 real_cost = -99.2019 FUGMOD_TS4 costs 0 real_cost = -88.2064 FUGMOD_TS3-scwrl costs 0 real_cost = -100.36 FUGMOD_TS3 costs 0 real_cost = -96.4153 FUGMOD_TS2-scwrl costs 0 real_cost = 71.5276 FUGMOD_TS2 costs 0 real_cost = 75.4025 FUGMOD_TS1-scwrl costs 0 real_cost = -79.6514 FUGMOD_TS1 costs 0 real_cost = -72.6674 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 342.626 FPSOLVER-SERVER_TS1 costs 0 real_cost = 345.82 FORTE2_AL5-scwrl costs 0 real_cost = -43.7922 FORTE2_AL5 costs 0 real_cost = 150.929 FORTE2_AL4-scwrl costs 0 real_cost = -68.9713 FORTE2_AL4 costs 0 real_cost = 121.529 FORTE2_AL3-scwrl costs 0 real_cost = -47.1204 FORTE2_AL3 costs 0 real_cost = 147.522 FORTE2_AL2-scwrl costs 0 real_cost = -48.2907 FORTE2_AL2 costs 0 real_cost = 138.715 FORTE2_AL1-scwrl costs 0 real_cost = -56.6539 FORTE2_AL1 costs 0 real_cost = 142.962 FORTE1_AL5-scwrl costs 0 real_cost = -40.8475 FORTE1_AL5 costs 0 real_cost = 159.878 FORTE1_AL4-scwrl costs 0 real_cost = -48.2907 FORTE1_AL4 costs 0 real_cost = 138.715 FORTE1_AL3-scwrl costs 0 real_cost = -64.3069 FORTE1_AL3 costs 0 real_cost = 136.412 FORTE1_AL2-scwrl costs 0 real_cost = -28.7023 FORTE1_AL2 costs 0 real_cost = 163.346 FORTE1_AL1-scwrl costs 0 real_cost = -56.6539 FORTE1_AL1 costs 0 real_cost = 142.962 FOLDpro_TS5-scwrl costs 0 real_cost = -61.0104 FOLDpro_TS5 costs 0 real_cost = -60.5731 FOLDpro_TS4-scwrl costs 0 real_cost = 226.902 FOLDpro_TS4 costs 0 real_cost = 233.592 FOLDpro_TS3-scwrl costs 0 real_cost = 311.686 FOLDpro_TS3 costs 0 real_cost = 315.586 FOLDpro_TS2-scwrl costs 0 real_cost = 92.6737 FOLDpro_TS2 costs 0 real_cost = 104.481 FOLDpro_TS1-scwrl costs 0 real_cost = -126.523 FOLDpro_TS1 costs 0 real_cost = -122.445 FAMS_TS5-scwrl costs 0 real_cost = -100.915 FAMS_TS5 costs 0 real_cost = -90.8881 FAMS_TS4-scwrl costs 0 real_cost = -66.0562 FAMS_TS4 costs 0 real_cost = -73.5821 FAMS_TS3-scwrl costs 0 real_cost = -101.294 FAMS_TS3 costs 0 real_cost = -94.1166 FAMS_TS2-scwrl costs 0 real_cost = -87.7121 FAMS_TS2 costs 0 real_cost = -92.8723 FAMS_TS1-scwrl costs 0 real_cost = -80.4335 FAMS_TS1 costs 0 real_cost = -79.5003 FAMSD_TS5-scwrl costs 0 real_cost = -78.6581 FAMSD_TS5 costs 0 real_cost = -73.4444 FAMSD_TS4-scwrl costs 0 real_cost = -62.2777 FAMSD_TS4 costs 0 real_cost = -53.1911 FAMSD_TS3-scwrl costs 0 real_cost = -79.8964 FAMSD_TS3 costs 0 real_cost = -91.1022 FAMSD_TS2-scwrl costs 0 real_cost = -66.0562 FAMSD_TS2 costs 0 real_cost = -73.5821 FAMSD_TS1-scwrl costs 0 real_cost = -99.879 FAMSD_TS1 costs 0 real_cost = -94.1178 Distill_TS5-scwrl costs 0 real_cost = 468.94 Distill_TS4-scwrl costs 0 real_cost = 463.522 Distill_TS3-scwrl costs 0 real_cost = 463.138 Distill_TS2-scwrl costs 0 real_cost = 459.503 Distill_TS1-scwrl costs 0 real_cost = 463.098 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -43.6186 CaspIta-FOX_TS5 costs 0 real_cost = -45.52 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -48.5537 CaspIta-FOX_TS4 costs 0 real_cost = -49.8199 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -67.5208 CaspIta-FOX_TS3 costs 0 real_cost = -68.9591 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -81.2786 CaspIta-FOX_TS2 costs 0 real_cost = -80.4085 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 19.453 CaspIta-FOX_TS1 costs 0 real_cost = 18.4852 CIRCLE_TS5-scwrl costs 0 real_cost = -79.8964 CIRCLE_TS5 costs 0 real_cost = -91.1022 CIRCLE_TS4-scwrl costs 0 real_cost = -100.915 CIRCLE_TS4 costs 0 real_cost = -90.8881 CIRCLE_TS3-scwrl costs 0 real_cost = -80.4335 CIRCLE_TS3 costs 0 real_cost = -79.5003 CIRCLE_TS2-scwrl costs 0 real_cost = -101.294 CIRCLE_TS2 costs 0 real_cost = -94.1166 CIRCLE_TS1-scwrl costs 0 real_cost = -87.7121 CIRCLE_TS1 costs 0 real_cost = -92.8723 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -137.937 Bilab-ENABLE_TS5 costs 0 real_cost = -137.937 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -92.7251 Bilab-ENABLE_TS4 costs 0 real_cost = -92.7251 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -76.0091 Bilab-ENABLE_TS3 costs 0 real_cost = -76.0091 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -72.1148 Bilab-ENABLE_TS2 costs 0 real_cost = -72.1148 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -57.3263 Bilab-ENABLE_TS1 costs 0 real_cost = -57.3263 BayesHH_TS1-scwrl costs 0 real_cost = -101.525 BayesHH_TS1 costs 0 real_cost = -100.423 ABIpro_TS5-scwrl costs 0 real_cost = 276.367 ABIpro_TS5 costs 0 real_cost = 276.367 ABIpro_TS4-scwrl costs 0 real_cost = 263.245 ABIpro_TS4 costs 0 real_cost = 262.794 ABIpro_TS3-scwrl costs 0 real_cost = 249.605 ABIpro_TS3 costs 0 real_cost = 249.586 ABIpro_TS2-scwrl costs 0 real_cost = 244.519 ABIpro_TS2 costs 0 real_cost = 244.242 ABIpro_TS1-scwrl costs 0 real_cost = 263.755 ABIpro_TS1 costs 0 real_cost = 263.767 3Dpro_TS5-scwrl costs 0 real_cost = -2.44952 3Dpro_TS5 costs 0 real_cost = -0.303573 3Dpro_TS4-scwrl costs 0 real_cost = 90.6022 3Dpro_TS4 costs 0 real_cost = 102.464 3Dpro_TS3-scwrl costs 0 real_cost = 201.46 3Dpro_TS3 costs 0 real_cost = 206.975 3Dpro_TS2-scwrl costs 0 real_cost = -42.1794 3Dpro_TS2 costs 0 real_cost = -32.4308 3Dpro_TS1-scwrl costs 0 real_cost = -123.887 3Dpro_TS1 costs 0 real_cost = -121.283 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -43.7866 3D-JIGSAW_TS5 costs 0 real_cost = -36.5238 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -55.0904 3D-JIGSAW_TS4 costs 0 real_cost = -62.7974 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -46.2205 3D-JIGSAW_TS3 costs 0 real_cost = -43.1515 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -53.8176 3D-JIGSAW_TS2 costs 0 real_cost = -50.7518 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -54.3712 3D-JIGSAW_TS1 costs 0 real_cost = -52.9984 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -47.6387 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -52.2289 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -46.455 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -43.4414 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -49.2543 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -39.7788 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -44.9781 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -34.2363 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -47.5023 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -39.6237 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -63.8307 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -67.8977 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -61.7974 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -65.4876 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -44.2798 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -47.9958 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 151.424 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 149.606 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -38.5348 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -42.0375 chimera-try5-server.pdb.gz costs 0 real_cost = -114.921 T0292.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -107.987 T0292.try7-opt2.pdb.gz costs 0 real_cost = -114.553 T0292.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -114.208 T0292.try7-opt1.pdb.gz costs 0 real_cost = -113.955 T0292.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -112.418 T0292.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -109.613 T0292.try6-opt2.pdb.gz costs 0 real_cost = -114.302 T0292.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -111.872 T0292.try6-opt1.pdb.gz costs 0 real_cost = -113.775 T0292.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -113.633 T0292.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -106.108 T0292.try5-opt2.pdb.gz costs 0 real_cost = -113.655 T0292.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -113.48 T0292.try5-opt1.pdb.gz costs 0 real_cost = -116.271 T0292.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -115.934 T0292.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -107.764 T0292.try4-opt2.pdb.gz costs 0 real_cost = -114.941 T0292.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -114.657 T0292.try4-opt1.pdb.gz costs 0 real_cost = -113.262 T0292.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -112.682 T0292.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -150.262 T0292.try3-opt2.pdb.gz costs 0 real_cost = -151.346 T0292.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -149.838 T0292.try3-opt1.pdb.gz costs 0 real_cost = -154.437 T0292.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -156.885 T0292.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -153.081 T0292.try2-opt2.pdb.gz costs 0 real_cost = -153.33 T0292.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -153.767 T0292.try2-opt1.pdb.gz costs 0 real_cost = -149.734 T0292.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -150.908 T0292.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 53.6454 T0292.try1-opt2.pdb.gz costs 0 real_cost = 53.895 T0292.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 55.3465 T0292.try1-opt1.pdb.gz costs 0 real_cost = 54.1713 T0292.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 54.8498 ../model5.ts-submitted costs 0 real_cost = 10.5857 ../model4.ts-submitted costs 0 real_cost = -109.383 ../model3.ts-submitted costs 0 real_cost = -151.336 ../model2.ts-submitted costs 0 real_cost = -106.081 ../model1.ts-submitted costs 0 real_cost = -114.541 align5 costs 0 real_cost = -35.8864 align4 costs 0 real_cost = 30.2174 align3 costs 0 real_cost = -7.50494 align2 costs 0 real_cost = -20.1089 align1 costs 0 real_cost = -6.66581 T0292.try1-opt2.pdb costs 0 real_cost = 53.888 model5-scwrl costs 0 real_cost = 99.8959 model5.ts-submitted costs 0 real_cost = 10.5857 model4-scwrl costs 0 real_cost = -110.597 model4.ts-submitted costs 0 real_cost = -109.383 model3-scwrl costs 0 real_cost = -154.016 model3.ts-submitted costs 0 real_cost = -151.336 model2-scwrl costs 0 real_cost = -112.056 model2.ts-submitted costs 0 real_cost = -106.081 model1-scwrl costs 0 real_cost = -111.746 model1.ts-submitted costs 0 real_cost = -114.538 2javA costs 0 real_cost = -829 # command:CPU_time= 1918.78 sec, elapsed time= 2889.97 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0292/ -e s/START_COL/1/ \ -e s/REAL_PDB/2javA/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174573353 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.82311 sec, elapsed time= 5.85946 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.8971 sec, elapsed time= 5.94988 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0292 numbered 1 through 277 Created new target T0292 from T0292.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0292_1.real.pdb looking for model 1 Skipped atom 498, because occupancy 5.0000000e-01 <= existing 0.500 in T0292_1.real.pdb Skipped atom 499, because occupancy 0.500 <= existing 0.500 in T0292_1.real.pdb Skipped atom 500, because occupancy 0.500 <= existing 0.500 in T0292_1.real.pdb Skipped atom 501, because occupancy 0.500 <= existing 0.500 in T0292_1.real.pdb Skipped atom 502, because occupancy 0.500 <= existing 0.500 in T0292_1.real.pdb Skipped atom 503, because occupancy 0.500 <= existing 0.500 in T0292_1.real.pdb # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.09877 sec, elapsed time= 8.41258 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 252 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -81.7073 # GDT_score(maxd=8,maxw=2.9)= -85.3508 # GDT_score(maxd=8,maxw=3.2)= -81.8524 # GDT_score(maxd=8,maxw=3.5)= -78.3996 # GDT_score(maxd=10,maxw=3.8)= -80.4638 # GDT_score(maxd=10,maxw=4)= -78.253 # GDT_score(maxd=10,maxw=4.2)= -76.0372 # GDT_score(maxd=12,maxw=4.3)= -79.1947 # GDT_score(maxd=12,maxw=4.5)= -77.0534 # GDT_score(maxd=12,maxw=4.7)= -74.9529 # GDT_score(maxd=14,maxw=5.2)= -73.2099 # GDT_score(maxd=14,maxw=5.5)= -70.1766 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 959.000 rmsd (weighted)= 2.124 (unweighted)= 28.914 superimposing iter= 1 total_weight= 1833.315 rmsd (weighted)= 1.187 (unweighted)= 28.925 superimposing iter= 2 total_weight= 953.654 rmsd (weighted)= 0.948 (unweighted)= 28.949 superimposing iter= 3 total_weight= 752.118 rmsd (weighted)= 0.858 (unweighted)= 28.965 superimposing iter= 4 total_weight= 715.352 rmsd (weighted)= 0.796 (unweighted)= 28.973 superimposing iter= 5 total_weight= 699.031 rmsd (weighted)= 0.748 (unweighted)= 28.978 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1310489205.pdb -s /var/tmp/to_scwrl_1310489205.seq -o /var/tmp/from_scwrl_1310489205.pdb > /var/tmp/scwrl_1310489205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1310489205.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -82.0122 # GDT_score(maxd=8,maxw=2.9)= -85.5979 # GDT_score(maxd=8,maxw=3.2)= -82.114 # GDT_score(maxd=8,maxw=3.5)= -78.6167 # GDT_score(maxd=10,maxw=3.8)= -80.6638 # GDT_score(maxd=10,maxw=4)= -78.4164 # GDT_score(maxd=10,maxw=4.2)= -76.1698 # GDT_score(maxd=12,maxw=4.3)= -79.3457 # GDT_score(maxd=12,maxw=4.5)= -77.1771 # GDT_score(maxd=12,maxw=4.7)= -75.0242 # GDT_score(maxd=14,maxw=5.2)= -73.2259 # GDT_score(maxd=14,maxw=5.5)= -70.1647 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1021724925.pdb -s /var/tmp/to_scwrl_1021724925.seq -o /var/tmp/from_scwrl_1021724925.pdb > /var/tmp/scwrl_1021724925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021724925.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.8902 # GDT_score(maxd=8,maxw=2.9)= -89.4532 # GDT_score(maxd=8,maxw=3.2)= -86.9746 # GDT_score(maxd=8,maxw=3.5)= -84.3388 # GDT_score(maxd=10,maxw=3.8)= -85.8582 # GDT_score(maxd=10,maxw=4)= -83.9161 # GDT_score(maxd=10,maxw=4.2)= -81.919 # GDT_score(maxd=12,maxw=4.3)= -84.556 # GDT_score(maxd=12,maxw=4.5)= -82.631 # GDT_score(maxd=12,maxw=4.7)= -80.6543 # GDT_score(maxd=14,maxw=5.2)= -78.756 # GDT_score(maxd=14,maxw=5.5)= -75.8113 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_398599767.pdb -s /var/tmp/to_scwrl_398599767.seq -o /var/tmp/from_scwrl_398599767.pdb > /var/tmp/scwrl_398599767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_398599767.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -84.1463 # GDT_score(maxd=8,maxw=2.9)= -88.1983 # GDT_score(maxd=8,maxw=3.2)= -85.1183 # GDT_score(maxd=8,maxw=3.5)= -82.0582 # GDT_score(maxd=10,maxw=3.8)= -83.785 # GDT_score(maxd=10,maxw=4)= -81.8054 # GDT_score(maxd=10,maxw=4.2)= -79.8006 # GDT_score(maxd=12,maxw=4.3)= -82.5716 # GDT_score(maxd=12,maxw=4.5)= -80.6363 # GDT_score(maxd=12,maxw=4.7)= -78.7218 # GDT_score(maxd=14,maxw=5.2)= -76.9827 # GDT_score(maxd=14,maxw=5.5)= -73.9953 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1163372612.pdb -s /var/tmp/to_scwrl_1163372612.seq -o /var/tmp/from_scwrl_1163372612.pdb > /var/tmp/scwrl_1163372612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1163372612.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.865854 # GDT_score = -71.0366 # GDT_score(maxd=8,maxw=2.9)= -73.8844 # GDT_score(maxd=8,maxw=3.2)= -71.1665 # GDT_score(maxd=8,maxw=3.5)= -68.4015 # GDT_score(maxd=10,maxw=3.8)= -70.1256 # GDT_score(maxd=10,maxw=4)= -68.3284 # GDT_score(maxd=10,maxw=4.2)= -66.4211 # GDT_score(maxd=12,maxw=4.3)= -69.1229 # GDT_score(maxd=12,maxw=4.5)= -67.2645 # GDT_score(maxd=12,maxw=4.7)= -65.3718 # GDT_score(maxd=14,maxw=5.2)= -63.8205 # GDT_score(maxd=14,maxw=5.5)= -61.2611 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1090598459.pdb -s /var/tmp/to_scwrl_1090598459.seq -o /var/tmp/from_scwrl_1090598459.pdb > /var/tmp/scwrl_1090598459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090598459.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0292.try1-opt2.pdb looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -85.3659 # GDT_score(maxd=8,maxw=2.9)= -88.7895 # GDT_score(maxd=8,maxw=3.2)= -86.0149 # GDT_score(maxd=8,maxw=3.5)= -83.0925 # GDT_score(maxd=10,maxw=3.8)= -84.7375 # GDT_score(maxd=10,maxw=4)= -82.6826 # GDT_score(maxd=10,maxw=4.2)= -80.5806 # GDT_score(maxd=12,maxw=4.3)= -83.3869 # GDT_score(maxd=12,maxw=4.5)= -81.3359 # GDT_score(maxd=12,maxw=4.7)= -79.2508 # GDT_score(maxd=14,maxw=5.2)= -77.4017 # GDT_score(maxd=14,maxw=5.5)= -74.3534 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 959.000 rmsd (weighted)= 2.372 (unweighted)= 37.545 superimposing iter= 1 total_weight= 2543.570 rmsd (weighted)= 1.065 (unweighted)= 37.428 superimposing iter= 2 total_weight= 1209.565 rmsd (weighted)= 0.733 (unweighted)= 37.367 superimposing iter= 3 total_weight= 868.912 rmsd (weighted)= 0.611 (unweighted)= 37.328 superimposing iter= 4 total_weight= 745.056 rmsd (weighted)= 0.555 (unweighted)= 37.306 superimposing iter= 5 total_weight= 679.063 rmsd (weighted)= 0.530 (unweighted)= 37.297 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)N165.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)H166.N and (T0292)S169.N only 0.000 apart, marking (T0292)H166.N as missing WARNING: atoms too close: (T0292)H166.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)H166.CA as missing WARNING: atoms too close: (T0292)F231.C and (T0292)R232.C only 0.000 apart, marking (T0292)R232.C as missing WARNING: atoms too close: (T0292)R232.N and (T0292)R233.N only 0.000 apart, marking (T0292)R232.N as missing WARNING: atoms too close: (T0292)R232.CA and (T0292)R233.CA only 0.000 apart, marking (T0292)R232.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.914634 # GDT_score = -75.6098 # GDT_score(maxd=8,maxw=2.9)= -78.3686 # GDT_score(maxd=8,maxw=3.2)= -75.7088 # GDT_score(maxd=8,maxw=3.5)= -72.9488 # GDT_score(maxd=10,maxw=3.8)= -74.699 # GDT_score(maxd=10,maxw=4)= -72.9009 # GDT_score(maxd=10,maxw=4.2)= -70.9898 # GDT_score(maxd=12,maxw=4.3)= -73.7062 # GDT_score(maxd=12,maxw=4.5)= -71.849 # GDT_score(maxd=12,maxw=4.7)= -69.9348 # GDT_score(maxd=14,maxw=5.2)= -68.3608 # GDT_score(maxd=14,maxw=5.5)= -65.7378 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)H166.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)D167.N and (T0292)S169.N only 0.000 apart, marking (T0292)D167.N as missing WARNING: atoms too close: (T0292)D167.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)D167.CA as missing WARNING: atoms too close: (T0292)A216.C and (T0292)S218.C only 0.000 apart, marking (T0292)S218.C as missing WARNING: atoms too close: (T0292)F217.N and (T0292)Q219.N only 0.000 apart, marking (T0292)F217.N as missing WARNING: atoms too close: (T0292)F217.CA and (T0292)Q219.CA only 0.000 apart, marking (T0292)F217.CA as missing WARNING: atoms too close: (T0292)E221.C and (T0292)K225.C only 0.000 apart, marking (T0292)K225.C as missing WARNING: atoms too close: (T0292)L222.N and (T0292)I226.N only 0.000 apart, marking (T0292)L222.N as missing WARNING: atoms too close: (T0292)L222.CA and (T0292)I226.CA only 0.000 apart, marking (T0292)L222.CA as missing WARNING: atoms too close: (T0292)R232.C and (T0292)R233.C only 0.000 apart, marking (T0292)R233.C as missing WARNING: atoms too close: (T0292)R233.N and (T0292)I234.N only 0.000 apart, marking (T0292)R233.N as missing WARNING: atoms too close: (T0292)R233.CA and (T0292)I234.CA only 0.000 apart, marking (T0292)R233.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.853659 # GDT_score = -69.5122 # GDT_score(maxd=8,maxw=2.9)= -72.9124 # GDT_score(maxd=8,maxw=3.2)= -70.2346 # GDT_score(maxd=8,maxw=3.5)= -67.5174 # GDT_score(maxd=10,maxw=3.8)= -69.215 # GDT_score(maxd=10,maxw=4)= -67.4141 # GDT_score(maxd=10,maxw=4.2)= -65.6354 # GDT_score(maxd=12,maxw=4.3)= -68.2052 # GDT_score(maxd=12,maxw=4.5)= -66.4794 # GDT_score(maxd=12,maxw=4.7)= -64.6511 # GDT_score(maxd=14,maxw=5.2)= -62.9548 # GDT_score(maxd=14,maxw=5.5)= -60.3181 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0292)K26.C and (T0292)D28.C only 0.000 apart, marking (T0292)D28.C as missing WARNING: atoms too close: (T0292)S27.N and (T0292)G29.N only 0.000 apart, marking (T0292)S27.N as missing WARNING: atoms too close: (T0292)S27.CA and (T0292)G29.CA only 0.000 apart, marking (T0292)S27.CA as missing WARNING: atoms too close: (T0292)G40.C and (T0292)E44.C only 0.000 apart, marking (T0292)E44.C as missing WARNING: atoms too close: (T0292)S41.N and (T0292)A45.N only 0.000 apart, marking (T0292)S41.N as missing WARNING: atoms too close: (T0292)S41.CA and (T0292)A45.CA only 0.000 apart, marking (T0292)S41.CA as missing WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)Q104.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)Y105.N and (T0292)L106.N only 0.000 apart, marking (T0292)Y105.N as missing WARNING: atoms too close: (T0292)Y105.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)Y105.CA as missing WARNING: atoms too close: (T0292)G132.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)H133.N and (T0292)V135.N only 0.000 apart, marking (T0292)H133.N as missing WARNING: atoms too close: (T0292)H133.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)H133.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0292)Y39.C and (T0292)M42.C only 0.000 apart, marking (T0292)M42.C as missing WARNING: atoms too close: (T0292)G40.N and (T0292)T43.N only 0.000 apart, marking (T0292)G40.N as missing WARNING: atoms too close: (T0292)G40.CA and (T0292)T43.CA only 0.000 apart, marking (T0292)G40.CA as missing WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)G89.C and (T0292)G90.C only 0.000 apart, marking (T0292)G90.C as missing WARNING: atoms too close: (T0292)G90.N and (T0292)D91.N only 0.000 apart, marking (T0292)G90.N as missing WARNING: atoms too close: (T0292)G90.CA and (T0292)D91.CA only 0.000 apart, marking (T0292)G90.CA as missing WARNING: atoms too close: (T0292)R103.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)Q104.N and (T0292)L106.N only 0.000 apart, marking (T0292)Q104.N as missing WARNING: atoms too close: (T0292)Q104.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)Q104.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)I163.C and (T0292)H166.C only 0.000 apart, marking (T0292)H166.C as missing WARNING: atoms too close: (T0292)L164.N and (T0292)D167.N only 0.000 apart, marking (T0292)L164.N as missing WARNING: atoms too close: (T0292)L164.CA and (T0292)D167.CA only 0.000 apart, marking (T0292)L164.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)N165.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)H166.N and (T0292)S169.N only 0.000 apart, marking (T0292)H166.N as missing WARNING: atoms too close: (T0292)H166.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)H166.CA as missing WARNING: atoms too close: (T0292)F231.C and (T0292)R232.C only 0.000 apart, marking (T0292)R232.C as missing WARNING: atoms too close: (T0292)R232.N and (T0292)R233.N only 0.000 apart, marking (T0292)R232.N as missing WARNING: atoms too close: (T0292)R232.CA and (T0292)R233.CA only 0.000 apart, marking (T0292)R232.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0292.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-server.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1712453293.pdb -s /var/tmp/to_scwrl_1712453293.seq -o /var/tmp/from_scwrl_1712453293.pdb > /var/tmp/scwrl_1712453293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1712453293.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1327222167.pdb -s /var/tmp/to_scwrl_1327222167.seq -o /var/tmp/from_scwrl_1327222167.pdb > /var/tmp/scwrl_1327222167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1327222167.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_34831654.pdb -s /var/tmp/to_scwrl_34831654.seq -o /var/tmp/from_scwrl_34831654.pdb > /var/tmp/scwrl_34831654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34831654.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1647316027.pdb -s /var/tmp/to_scwrl_1647316027.seq -o /var/tmp/from_scwrl_1647316027.pdb > /var/tmp/scwrl_1647316027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647316027.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_989782821.pdb -s /var/tmp/to_scwrl_989782821.seq -o /var/tmp/from_scwrl_989782821.pdb > /var/tmp/scwrl_989782821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989782821.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_805752648.pdb -s /var/tmp/to_scwrl_805752648.seq -o /var/tmp/from_scwrl_805752648.pdb > /var/tmp/scwrl_805752648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805752648.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1355726789.pdb -s /var/tmp/to_scwrl_1355726789.seq -o /var/tmp/from_scwrl_1355726789.pdb > /var/tmp/scwrl_1355726789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1355726789.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2058367977.pdb -s /var/tmp/to_scwrl_2058367977.seq -o /var/tmp/from_scwrl_2058367977.pdb > /var/tmp/scwrl_2058367977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2058367977.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_925225538.pdb -s /var/tmp/to_scwrl_925225538.seq -o /var/tmp/from_scwrl_925225538.pdb > /var/tmp/scwrl_925225538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925225538.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1314530971.pdb -s /var/tmp/to_scwrl_1314530971.seq -o /var/tmp/from_scwrl_1314530971.pdb > /var/tmp/scwrl_1314530971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1314530971.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_988555292.pdb -s /var/tmp/to_scwrl_988555292.seq -o /var/tmp/from_scwrl_988555292.pdb > /var/tmp/scwrl_988555292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_988555292.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_490814053.pdb -s /var/tmp/to_scwrl_490814053.seq -o /var/tmp/from_scwrl_490814053.pdb > /var/tmp/scwrl_490814053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_490814053.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1758841033.pdb -s /var/tmp/to_scwrl_1758841033.seq -o /var/tmp/from_scwrl_1758841033.pdb > /var/tmp/scwrl_1758841033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758841033.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_669407440.pdb -s /var/tmp/to_scwrl_669407440.seq -o /var/tmp/from_scwrl_669407440.pdb > /var/tmp/scwrl_669407440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669407440.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1836169358.pdb -s /var/tmp/to_scwrl_1836169358.seq -o /var/tmp/from_scwrl_1836169358.pdb > /var/tmp/scwrl_1836169358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836169358.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1324329734.pdb -s /var/tmp/to_scwrl_1324329734.seq -o /var/tmp/from_scwrl_1324329734.pdb > /var/tmp/scwrl_1324329734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324329734.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_89039590.pdb -s /var/tmp/to_scwrl_89039590.seq -o /var/tmp/from_scwrl_89039590.pdb > /var/tmp/scwrl_89039590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_89039590.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1708725733.pdb -s /var/tmp/to_scwrl_1708725733.seq -o /var/tmp/from_scwrl_1708725733.pdb > /var/tmp/scwrl_1708725733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1708725733.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_184140035.pdb -s /var/tmp/to_scwrl_184140035.seq -o /var/tmp/from_scwrl_184140035.pdb > /var/tmp/scwrl_184140035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_184140035.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_996147391.pdb -s /var/tmp/to_scwrl_996147391.seq -o /var/tmp/from_scwrl_996147391.pdb > /var/tmp/scwrl_996147391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996147391.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1951882395.pdb -s /var/tmp/to_scwrl_1951882395.seq -o /var/tmp/from_scwrl_1951882395.pdb > /var/tmp/scwrl_1951882395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951882395.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1779464139.pdb -s /var/tmp/to_scwrl_1779464139.seq -o /var/tmp/from_scwrl_1779464139.pdb > /var/tmp/scwrl_1779464139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1779464139.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1951337283.pdb -s /var/tmp/to_scwrl_1951337283.seq -o /var/tmp/from_scwrl_1951337283.pdb > /var/tmp/scwrl_1951337283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951337283.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1058093661.pdb -s /var/tmp/to_scwrl_1058093661.seq -o /var/tmp/from_scwrl_1058093661.pdb > /var/tmp/scwrl_1058093661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058093661.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1873306691.pdb -s /var/tmp/to_scwrl_1873306691.seq -o /var/tmp/from_scwrl_1873306691.pdb > /var/tmp/scwrl_1873306691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873306691.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1536648104.pdb -s /var/tmp/to_scwrl_1536648104.seq -o /var/tmp/from_scwrl_1536648104.pdb > /var/tmp/scwrl_1536648104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536648104.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_221099219.pdb -s /var/tmp/to_scwrl_221099219.seq -o /var/tmp/from_scwrl_221099219.pdb > /var/tmp/scwrl_221099219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_221099219.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_747547969.pdb -s /var/tmp/to_scwrl_747547969.seq -o /var/tmp/from_scwrl_747547969.pdb > /var/tmp/scwrl_747547969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747547969.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1935247871.pdb -s /var/tmp/to_scwrl_1935247871.seq -o /var/tmp/from_scwrl_1935247871.pdb > /var/tmp/scwrl_1935247871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1935247871.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1384471832.pdb -s /var/tmp/to_scwrl_1384471832.seq -o /var/tmp/from_scwrl_1384471832.pdb > /var/tmp/scwrl_1384471832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384471832.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1838146428.pdb -s /var/tmp/to_scwrl_1838146428.seq -o /var/tmp/from_scwrl_1838146428.pdb > /var/tmp/scwrl_1838146428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838146428.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1500217517.pdb -s /var/tmp/to_scwrl_1500217517.seq -o /var/tmp/from_scwrl_1500217517.pdb > /var/tmp/scwrl_1500217517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500217517.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_564210353.pdb -s /var/tmp/to_scwrl_564210353.seq -o /var/tmp/from_scwrl_564210353.pdb > /var/tmp/scwrl_564210353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_564210353.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1872978082.pdb -s /var/tmp/to_scwrl_1872978082.seq -o /var/tmp/from_scwrl_1872978082.pdb > /var/tmp/scwrl_1872978082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1872978082.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1000049898.pdb -s /var/tmp/to_scwrl_1000049898.seq -o /var/tmp/from_scwrl_1000049898.pdb > /var/tmp/scwrl_1000049898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000049898.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1553993173.pdb -s /var/tmp/to_scwrl_1553993173.seq -o /var/tmp/from_scwrl_1553993173.pdb > /var/tmp/scwrl_1553993173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553993173.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_531247083.pdb -s /var/tmp/to_scwrl_531247083.seq -o /var/tmp/from_scwrl_531247083.pdb > /var/tmp/scwrl_531247083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_531247083.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_208293041.pdb -s /var/tmp/to_scwrl_208293041.seq -o /var/tmp/from_scwrl_208293041.pdb > /var/tmp/scwrl_208293041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_208293041.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1464877504.pdb -s /var/tmp/to_scwrl_1464877504.seq -o /var/tmp/from_scwrl_1464877504.pdb > /var/tmp/scwrl_1464877504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1464877504.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1456472620.pdb -s /var/tmp/to_scwrl_1456472620.seq -o /var/tmp/from_scwrl_1456472620.pdb > /var/tmp/scwrl_1456472620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456472620.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)A223.C and (T0292)G224.N only 0.000 apart, marking (T0292)G224.N as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.CA only 0.000 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.CA only 0.000 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.O and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1522824012.pdb -s /var/tmp/to_scwrl_1522824012.seq -o /var/tmp/from_scwrl_1522824012.pdb > /var/tmp/scwrl_1522824012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522824012.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_305949149.pdb -s /var/tmp/to_scwrl_305949149.seq -o /var/tmp/from_scwrl_305949149.pdb > /var/tmp/scwrl_305949149.log Error: Couldn't open file /var/tmp/from_scwrl_305949149.pdb or /var/tmp/from_scwrl_305949149.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_305949149_b.pdb or decoys//var/tmp/from_scwrl_305949149_b.pdb.gz for input Trying /var/tmp/from_scwrl_305949149_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_305949149_b.pdb or /var/tmp/from_scwrl_305949149_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_305949149_a.pdb or decoys//var/tmp/from_scwrl_305949149_a.pdb.gz for input Trying /var/tmp/from_scwrl_305949149_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_305949149_a.pdb or /var/tmp/from_scwrl_305949149_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_305949149.pdb or /var/tmp/from_scwrl_305949149_b.pdb or /var/tmp/from_scwrl_305949149_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1947286674.pdb -s /var/tmp/to_scwrl_1947286674.seq -o /var/tmp/from_scwrl_1947286674.pdb > /var/tmp/scwrl_1947286674.log Error: Couldn't open file /var/tmp/from_scwrl_1947286674.pdb or /var/tmp/from_scwrl_1947286674.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1947286674_b.pdb or decoys//var/tmp/from_scwrl_1947286674_b.pdb.gz for input Trying /var/tmp/from_scwrl_1947286674_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1947286674_b.pdb or /var/tmp/from_scwrl_1947286674_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1947286674_a.pdb or decoys//var/tmp/from_scwrl_1947286674_a.pdb.gz for input Trying /var/tmp/from_scwrl_1947286674_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1947286674_a.pdb or /var/tmp/from_scwrl_1947286674_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1947286674.pdb or /var/tmp/from_scwrl_1947286674_b.pdb or /var/tmp/from_scwrl_1947286674_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1134181398.pdb -s /var/tmp/to_scwrl_1134181398.seq -o /var/tmp/from_scwrl_1134181398.pdb > /var/tmp/scwrl_1134181398.log Error: Couldn't open file /var/tmp/from_scwrl_1134181398.pdb or /var/tmp/from_scwrl_1134181398.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1134181398_b.pdb or decoys//var/tmp/from_scwrl_1134181398_b.pdb.gz for input Trying /var/tmp/from_scwrl_1134181398_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1134181398_b.pdb or /var/tmp/from_scwrl_1134181398_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1134181398_a.pdb or decoys//var/tmp/from_scwrl_1134181398_a.pdb.gz for input Trying /var/tmp/from_scwrl_1134181398_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1134181398_a.pdb or /var/tmp/from_scwrl_1134181398_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1134181398.pdb or /var/tmp/from_scwrl_1134181398_b.pdb or /var/tmp/from_scwrl_1134181398_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_975356589.pdb -s /var/tmp/to_scwrl_975356589.seq -o /var/tmp/from_scwrl_975356589.pdb > /var/tmp/scwrl_975356589.log Error: Couldn't open file /var/tmp/from_scwrl_975356589.pdb or /var/tmp/from_scwrl_975356589.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_975356589_b.pdb or decoys//var/tmp/from_scwrl_975356589_b.pdb.gz for input Trying /var/tmp/from_scwrl_975356589_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_975356589_b.pdb or /var/tmp/from_scwrl_975356589_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_975356589_a.pdb or decoys//var/tmp/from_scwrl_975356589_a.pdb.gz for input Trying /var/tmp/from_scwrl_975356589_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_975356589_a.pdb or /var/tmp/from_scwrl_975356589_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_975356589.pdb or /var/tmp/from_scwrl_975356589_b.pdb or /var/tmp/from_scwrl_975356589_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1635972385.pdb -s /var/tmp/to_scwrl_1635972385.seq -o /var/tmp/from_scwrl_1635972385.pdb > /var/tmp/scwrl_1635972385.log Error: Couldn't open file /var/tmp/from_scwrl_1635972385.pdb or /var/tmp/from_scwrl_1635972385.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1635972385_b.pdb or decoys//var/tmp/from_scwrl_1635972385_b.pdb.gz for input Trying /var/tmp/from_scwrl_1635972385_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1635972385_b.pdb or /var/tmp/from_scwrl_1635972385_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1635972385_a.pdb or decoys//var/tmp/from_scwrl_1635972385_a.pdb.gz for input Trying /var/tmp/from_scwrl_1635972385_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1635972385_a.pdb or /var/tmp/from_scwrl_1635972385_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1635972385.pdb or /var/tmp/from_scwrl_1635972385_b.pdb or /var/tmp/from_scwrl_1635972385_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_311027486.pdb -s /var/tmp/to_scwrl_311027486.seq -o /var/tmp/from_scwrl_311027486.pdb > /var/tmp/scwrl_311027486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_311027486.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1064396179.pdb -s /var/tmp/to_scwrl_1064396179.seq -o /var/tmp/from_scwrl_1064396179.pdb > /var/tmp/scwrl_1064396179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064396179.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1197214472.pdb -s /var/tmp/to_scwrl_1197214472.seq -o /var/tmp/from_scwrl_1197214472.pdb > /var/tmp/scwrl_1197214472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197214472.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_495167522.pdb -s /var/tmp/to_scwrl_495167522.seq -o /var/tmp/from_scwrl_495167522.pdb > /var/tmp/scwrl_495167522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_495167522.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2060543569.pdb -s /var/tmp/to_scwrl_2060543569.seq -o /var/tmp/from_scwrl_2060543569.pdb > /var/tmp/scwrl_2060543569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060543569.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1001613221.pdb -s /var/tmp/to_scwrl_1001613221.seq -o /var/tmp/from_scwrl_1001613221.pdb > /var/tmp/scwrl_1001613221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001613221.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_127148014.pdb -s /var/tmp/to_scwrl_127148014.seq -o /var/tmp/from_scwrl_127148014.pdb > /var/tmp/scwrl_127148014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127148014.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1864397205.pdb -s /var/tmp/to_scwrl_1864397205.seq -o /var/tmp/from_scwrl_1864397205.pdb > /var/tmp/scwrl_1864397205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864397205.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2059706882.pdb -s /var/tmp/to_scwrl_2059706882.seq -o /var/tmp/from_scwrl_2059706882.pdb > /var/tmp/scwrl_2059706882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059706882.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2000454705.pdb -s /var/tmp/to_scwrl_2000454705.seq -o /var/tmp/from_scwrl_2000454705.pdb > /var/tmp/scwrl_2000454705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000454705.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1253561663.pdb -s /var/tmp/to_scwrl_1253561663.seq -o /var/tmp/from_scwrl_1253561663.pdb > /var/tmp/scwrl_1253561663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1253561663.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_133322454.pdb -s /var/tmp/to_scwrl_133322454.seq -o /var/tmp/from_scwrl_133322454.pdb > /var/tmp/scwrl_133322454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133322454.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_600519027.pdb -s /var/tmp/to_scwrl_600519027.seq -o /var/tmp/from_scwrl_600519027.pdb > /var/tmp/scwrl_600519027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600519027.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1041325888.pdb -s /var/tmp/to_scwrl_1041325888.seq -o /var/tmp/from_scwrl_1041325888.pdb > /var/tmp/scwrl_1041325888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1041325888.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1517794286.pdb -s /var/tmp/to_scwrl_1517794286.seq -o /var/tmp/from_scwrl_1517794286.pdb > /var/tmp/scwrl_1517794286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1517794286.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_291181808.pdb -s /var/tmp/to_scwrl_291181808.seq -o /var/tmp/from_scwrl_291181808.pdb > /var/tmp/scwrl_291181808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_291181808.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_394059759.pdb -s /var/tmp/to_scwrl_394059759.seq -o /var/tmp/from_scwrl_394059759.pdb > /var/tmp/scwrl_394059759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_394059759.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2082004640.pdb -s /var/tmp/to_scwrl_2082004640.seq -o /var/tmp/from_scwrl_2082004640.pdb > /var/tmp/scwrl_2082004640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2082004640.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_16676243.pdb -s /var/tmp/to_scwrl_16676243.seq -o /var/tmp/from_scwrl_16676243.pdb > /var/tmp/scwrl_16676243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16676243.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1394109656.pdb -s /var/tmp/to_scwrl_1394109656.seq -o /var/tmp/from_scwrl_1394109656.pdb > /var/tmp/scwrl_1394109656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1394109656.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1488514166.pdb -s /var/tmp/to_scwrl_1488514166.seq -o /var/tmp/from_scwrl_1488514166.pdb > /var/tmp/scwrl_1488514166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1488514166.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_547923326.pdb -s /var/tmp/to_scwrl_547923326.seq -o /var/tmp/from_scwrl_547923326.pdb > /var/tmp/scwrl_547923326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547923326.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1602402697.pdb -s /var/tmp/to_scwrl_1602402697.seq -o /var/tmp/from_scwrl_1602402697.pdb > /var/tmp/scwrl_1602402697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602402697.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_805908024.pdb -s /var/tmp/to_scwrl_805908024.seq -o /var/tmp/from_scwrl_805908024.pdb > /var/tmp/scwrl_805908024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805908024.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2004395947.pdb -s /var/tmp/to_scwrl_2004395947.seq -o /var/tmp/from_scwrl_2004395947.pdb > /var/tmp/scwrl_2004395947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2004395947.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_977743063.pdb -s /var/tmp/to_scwrl_977743063.seq -o /var/tmp/from_scwrl_977743063.pdb > /var/tmp/scwrl_977743063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977743063.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1111857172.pdb -s /var/tmp/to_scwrl_1111857172.seq -o /var/tmp/from_scwrl_1111857172.pdb > /var/tmp/scwrl_1111857172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111857172.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1804198974.pdb -s /var/tmp/to_scwrl_1804198974.seq -o /var/tmp/from_scwrl_1804198974.pdb > /var/tmp/scwrl_1804198974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1804198974.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2111924461.pdb -s /var/tmp/to_scwrl_2111924461.seq -o /var/tmp/from_scwrl_2111924461.pdb > /var/tmp/scwrl_2111924461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2111924461.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2087213762.pdb -s /var/tmp/to_scwrl_2087213762.seq -o /var/tmp/from_scwrl_2087213762.pdb > /var/tmp/scwrl_2087213762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087213762.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1292687712.pdb -s /var/tmp/to_scwrl_1292687712.seq -o /var/tmp/from_scwrl_1292687712.pdb > /var/tmp/scwrl_1292687712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1292687712.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_275468301.pdb -s /var/tmp/to_scwrl_275468301.seq -o /var/tmp/from_scwrl_275468301.pdb > /var/tmp/scwrl_275468301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275468301.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1004126294.pdb -s /var/tmp/to_scwrl_1004126294.seq -o /var/tmp/from_scwrl_1004126294.pdb > /var/tmp/scwrl_1004126294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1004126294.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_342418538.pdb -s /var/tmp/to_scwrl_342418538.seq -o /var/tmp/from_scwrl_342418538.pdb > /var/tmp/scwrl_342418538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342418538.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_770635823.pdb -s /var/tmp/to_scwrl_770635823.seq -o /var/tmp/from_scwrl_770635823.pdb > /var/tmp/scwrl_770635823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770635823.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_917186217.pdb -s /var/tmp/to_scwrl_917186217.seq -o /var/tmp/from_scwrl_917186217.pdb > /var/tmp/scwrl_917186217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_917186217.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1344031759.pdb -s /var/tmp/to_scwrl_1344031759.seq -o /var/tmp/from_scwrl_1344031759.pdb > /var/tmp/scwrl_1344031759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1344031759.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_897783837.pdb -s /var/tmp/to_scwrl_897783837.seq -o /var/tmp/from_scwrl_897783837.pdb > /var/tmp/scwrl_897783837.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897783837.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_634099775.pdb -s /var/tmp/to_scwrl_634099775.seq -o /var/tmp/from_scwrl_634099775.pdb > /var/tmp/scwrl_634099775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634099775.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1256254994.pdb -s /var/tmp/to_scwrl_1256254994.seq -o /var/tmp/from_scwrl_1256254994.pdb > /var/tmp/scwrl_1256254994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256254994.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_750754896.pdb -s /var/tmp/to_scwrl_750754896.seq -o /var/tmp/from_scwrl_750754896.pdb > /var/tmp/scwrl_750754896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_750754896.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1887661438.pdb -s /var/tmp/to_scwrl_1887661438.seq -o /var/tmp/from_scwrl_1887661438.pdb > /var/tmp/scwrl_1887661438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887661438.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1389577448.pdb -s /var/tmp/to_scwrl_1389577448.seq -o /var/tmp/from_scwrl_1389577448.pdb > /var/tmp/scwrl_1389577448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1389577448.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1351273922.pdb -s /var/tmp/to_scwrl_1351273922.seq -o /var/tmp/from_scwrl_1351273922.pdb > /var/tmp/scwrl_1351273922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351273922.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_781503680.pdb -s /var/tmp/to_scwrl_781503680.seq -o /var/tmp/from_scwrl_781503680.pdb > /var/tmp/scwrl_781503680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_781503680.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_759888089.pdb -s /var/tmp/to_scwrl_759888089.seq -o /var/tmp/from_scwrl_759888089.pdb > /var/tmp/scwrl_759888089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759888089.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1642455731.pdb -s /var/tmp/to_scwrl_1642455731.seq -o /var/tmp/from_scwrl_1642455731.pdb > /var/tmp/scwrl_1642455731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642455731.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1175563438.pdb -s /var/tmp/to_scwrl_1175563438.seq -o /var/tmp/from_scwrl_1175563438.pdb > /var/tmp/scwrl_1175563438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1175563438.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_694409082.pdb -s /var/tmp/to_scwrl_694409082.seq -o /var/tmp/from_scwrl_694409082.pdb > /var/tmp/scwrl_694409082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694409082.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1659131974.pdb -s /var/tmp/to_scwrl_1659131974.seq -o /var/tmp/from_scwrl_1659131974.pdb > /var/tmp/scwrl_1659131974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659131974.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_422189448.pdb -s /var/tmp/to_scwrl_422189448.seq -o /var/tmp/from_scwrl_422189448.pdb > /var/tmp/scwrl_422189448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422189448.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_35439601.pdb -s /var/tmp/to_scwrl_35439601.seq -o /var/tmp/from_scwrl_35439601.pdb > /var/tmp/scwrl_35439601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_35439601.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_59571654.pdb -s /var/tmp/to_scwrl_59571654.seq -o /var/tmp/from_scwrl_59571654.pdb > /var/tmp/scwrl_59571654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_59571654.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2024592146.pdb -s /var/tmp/to_scwrl_2024592146.seq -o /var/tmp/from_scwrl_2024592146.pdb > /var/tmp/scwrl_2024592146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2024592146.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_841347626.pdb -s /var/tmp/to_scwrl_841347626.seq -o /var/tmp/from_scwrl_841347626.pdb > /var/tmp/scwrl_841347626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_841347626.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2063967601.pdb -s /var/tmp/to_scwrl_2063967601.seq -o /var/tmp/from_scwrl_2063967601.pdb > /var/tmp/scwrl_2063967601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2063967601.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_854851562.pdb -s /var/tmp/to_scwrl_854851562.seq -o /var/tmp/from_scwrl_854851562.pdb > /var/tmp/scwrl_854851562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854851562.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1953204798.pdb -s /var/tmp/to_scwrl_1953204798.seq -o /var/tmp/from_scwrl_1953204798.pdb > /var/tmp/scwrl_1953204798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1953204798.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1720682928.pdb -s /var/tmp/to_scwrl_1720682928.seq -o /var/tmp/from_scwrl_1720682928.pdb > /var/tmp/scwrl_1720682928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720682928.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_819292377.pdb -s /var/tmp/to_scwrl_819292377.seq -o /var/tmp/from_scwrl_819292377.pdb > /var/tmp/scwrl_819292377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_819292377.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1892934913.pdb -s /var/tmp/to_scwrl_1892934913.seq -o /var/tmp/from_scwrl_1892934913.pdb > /var/tmp/scwrl_1892934913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1892934913.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_865886994.pdb -s /var/tmp/to_scwrl_865886994.seq -o /var/tmp/from_scwrl_865886994.pdb > /var/tmp/scwrl_865886994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_865886994.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1094760677.pdb -s /var/tmp/to_scwrl_1094760677.seq -o /var/tmp/from_scwrl_1094760677.pdb > /var/tmp/scwrl_1094760677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1094760677.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_749577561.pdb -s /var/tmp/to_scwrl_749577561.seq -o /var/tmp/from_scwrl_749577561.pdb > /var/tmp/scwrl_749577561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749577561.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1208305532.pdb -s /var/tmp/to_scwrl_1208305532.seq -o /var/tmp/from_scwrl_1208305532.pdb > /var/tmp/scwrl_1208305532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1208305532.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1865396500.pdb -s /var/tmp/to_scwrl_1865396500.seq -o /var/tmp/from_scwrl_1865396500.pdb > /var/tmp/scwrl_1865396500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865396500.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1666763777.pdb -s /var/tmp/to_scwrl_1666763777.seq -o /var/tmp/from_scwrl_1666763777.pdb > /var/tmp/scwrl_1666763777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1666763777.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_404853645.pdb -s /var/tmp/to_scwrl_404853645.seq -o /var/tmp/from_scwrl_404853645.pdb > /var/tmp/scwrl_404853645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_404853645.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_615696690.pdb -s /var/tmp/to_scwrl_615696690.seq -o /var/tmp/from_scwrl_615696690.pdb > /var/tmp/scwrl_615696690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_615696690.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_153379905.pdb -s /var/tmp/to_scwrl_153379905.seq -o /var/tmp/from_scwrl_153379905.pdb > /var/tmp/scwrl_153379905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153379905.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1661108639.pdb -s /var/tmp/to_scwrl_1661108639.seq -o /var/tmp/from_scwrl_1661108639.pdb > /var/tmp/scwrl_1661108639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661108639.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1366451585.pdb -s /var/tmp/to_scwrl_1366451585.seq -o /var/tmp/from_scwrl_1366451585.pdb > /var/tmp/scwrl_1366451585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366451585.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2041041344.pdb -s /var/tmp/to_scwrl_2041041344.seq -o /var/tmp/from_scwrl_2041041344.pdb > /var/tmp/scwrl_2041041344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041041344.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_903202441.pdb -s /var/tmp/to_scwrl_903202441.seq -o /var/tmp/from_scwrl_903202441.pdb > /var/tmp/scwrl_903202441.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_903202441.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_570241862.pdb -s /var/tmp/to_scwrl_570241862.seq -o /var/tmp/from_scwrl_570241862.pdb > /var/tmp/scwrl_570241862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_570241862.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_675061377.pdb -s /var/tmp/to_scwrl_675061377.seq -o /var/tmp/from_scwrl_675061377.pdb > /var/tmp/scwrl_675061377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_675061377.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1663090529.pdb -s /var/tmp/to_scwrl_1663090529.seq -o /var/tmp/from_scwrl_1663090529.pdb > /var/tmp/scwrl_1663090529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663090529.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_65213946.pdb -s /var/tmp/to_scwrl_65213946.seq -o /var/tmp/from_scwrl_65213946.pdb > /var/tmp/scwrl_65213946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_65213946.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1850624815.pdb -s /var/tmp/to_scwrl_1850624815.seq -o /var/tmp/from_scwrl_1850624815.pdb > /var/tmp/scwrl_1850624815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1850624815.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_210015964.pdb -s /var/tmp/to_scwrl_210015964.seq -o /var/tmp/from_scwrl_210015964.pdb > /var/tmp/scwrl_210015964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210015964.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1724345920.pdb -s /var/tmp/to_scwrl_1724345920.seq -o /var/tmp/from_scwrl_1724345920.pdb > /var/tmp/scwrl_1724345920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724345920.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_125330616.pdb -s /var/tmp/to_scwrl_125330616.seq -o /var/tmp/from_scwrl_125330616.pdb > /var/tmp/scwrl_125330616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_125330616.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_245455566.pdb -s /var/tmp/to_scwrl_245455566.seq -o /var/tmp/from_scwrl_245455566.pdb > /var/tmp/scwrl_245455566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_245455566.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1783917574.pdb -s /var/tmp/to_scwrl_1783917574.seq -o /var/tmp/from_scwrl_1783917574.pdb > /var/tmp/scwrl_1783917574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783917574.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2439115.pdb -s /var/tmp/to_scwrl_2439115.seq -o /var/tmp/from_scwrl_2439115.pdb > /var/tmp/scwrl_2439115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2439115.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1086803191.pdb -s /var/tmp/to_scwrl_1086803191.seq -o /var/tmp/from_scwrl_1086803191.pdb > /var/tmp/scwrl_1086803191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1086803191.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1700401528.pdb -s /var/tmp/to_scwrl_1700401528.seq -o /var/tmp/from_scwrl_1700401528.pdb > /var/tmp/scwrl_1700401528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700401528.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_857290678.pdb -s /var/tmp/to_scwrl_857290678.seq -o /var/tmp/from_scwrl_857290678.pdb > /var/tmp/scwrl_857290678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857290678.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_892524343.pdb -s /var/tmp/to_scwrl_892524343.seq -o /var/tmp/from_scwrl_892524343.pdb > /var/tmp/scwrl_892524343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892524343.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1273600809.pdb -s /var/tmp/to_scwrl_1273600809.seq -o /var/tmp/from_scwrl_1273600809.pdb > /var/tmp/scwrl_1273600809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273600809.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1676583054.pdb -s /var/tmp/to_scwrl_1676583054.seq -o /var/tmp/from_scwrl_1676583054.pdb > /var/tmp/scwrl_1676583054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676583054.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_637975610.pdb -s /var/tmp/to_scwrl_637975610.seq -o /var/tmp/from_scwrl_637975610.pdb > /var/tmp/scwrl_637975610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637975610.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2139487804.pdb -s /var/tmp/to_scwrl_2139487804.seq -o /var/tmp/from_scwrl_2139487804.pdb > /var/tmp/scwrl_2139487804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139487804.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_623860085.pdb -s /var/tmp/to_scwrl_623860085.seq -o /var/tmp/from_scwrl_623860085.pdb > /var/tmp/scwrl_623860085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623860085.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1387553170.pdb -s /var/tmp/to_scwrl_1387553170.seq -o /var/tmp/from_scwrl_1387553170.pdb > /var/tmp/scwrl_1387553170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387553170.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1200309689.pdb -s /var/tmp/to_scwrl_1200309689.seq -o /var/tmp/from_scwrl_1200309689.pdb > /var/tmp/scwrl_1200309689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200309689.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_341772938.pdb -s /var/tmp/to_scwrl_341772938.seq -o /var/tmp/from_scwrl_341772938.pdb > /var/tmp/scwrl_341772938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_341772938.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_906833301.pdb -s /var/tmp/to_scwrl_906833301.seq -o /var/tmp/from_scwrl_906833301.pdb > /var/tmp/scwrl_906833301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906833301.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1605163334.pdb -s /var/tmp/to_scwrl_1605163334.seq -o /var/tmp/from_scwrl_1605163334.pdb > /var/tmp/scwrl_1605163334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1605163334.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_957469628.pdb -s /var/tmp/to_scwrl_957469628.seq -o /var/tmp/from_scwrl_957469628.pdb > /var/tmp/scwrl_957469628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957469628.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1060213206.pdb -s /var/tmp/to_scwrl_1060213206.seq -o /var/tmp/from_scwrl_1060213206.pdb > /var/tmp/scwrl_1060213206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1060213206.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1118788326.pdb -s /var/tmp/to_scwrl_1118788326.seq -o /var/tmp/from_scwrl_1118788326.pdb > /var/tmp/scwrl_1118788326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118788326.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_176437567.pdb -s /var/tmp/to_scwrl_176437567.seq -o /var/tmp/from_scwrl_176437567.pdb > /var/tmp/scwrl_176437567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176437567.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_953770903.pdb -s /var/tmp/to_scwrl_953770903.seq -o /var/tmp/from_scwrl_953770903.pdb > /var/tmp/scwrl_953770903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953770903.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2021990767.pdb -s /var/tmp/to_scwrl_2021990767.seq -o /var/tmp/from_scwrl_2021990767.pdb > /var/tmp/scwrl_2021990767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021990767.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_746679429.pdb -s /var/tmp/to_scwrl_746679429.seq -o /var/tmp/from_scwrl_746679429.pdb > /var/tmp/scwrl_746679429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_746679429.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1628832279.pdb -s /var/tmp/to_scwrl_1628832279.seq -o /var/tmp/from_scwrl_1628832279.pdb > /var/tmp/scwrl_1628832279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628832279.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1537597650.pdb -s /var/tmp/to_scwrl_1537597650.seq -o /var/tmp/from_scwrl_1537597650.pdb > /var/tmp/scwrl_1537597650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537597650.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_811893375.pdb -s /var/tmp/to_scwrl_811893375.seq -o /var/tmp/from_scwrl_811893375.pdb > /var/tmp/scwrl_811893375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_811893375.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1331973447.pdb -s /var/tmp/to_scwrl_1331973447.seq -o /var/tmp/from_scwrl_1331973447.pdb > /var/tmp/scwrl_1331973447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331973447.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1747613614.pdb -s /var/tmp/to_scwrl_1747613614.seq -o /var/tmp/from_scwrl_1747613614.pdb > /var/tmp/scwrl_1747613614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1747613614.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_388755648.pdb -s /var/tmp/to_scwrl_388755648.seq -o /var/tmp/from_scwrl_388755648.pdb > /var/tmp/scwrl_388755648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_388755648.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1457304064.pdb -s /var/tmp/to_scwrl_1457304064.seq -o /var/tmp/from_scwrl_1457304064.pdb > /var/tmp/scwrl_1457304064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1457304064.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1993069180.pdb -s /var/tmp/to_scwrl_1993069180.seq -o /var/tmp/from_scwrl_1993069180.pdb > /var/tmp/scwrl_1993069180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993069180.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_25189576.pdb -s /var/tmp/to_scwrl_25189576.seq -o /var/tmp/from_scwrl_25189576.pdb > /var/tmp/scwrl_25189576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25189576.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1459743179.pdb -s /var/tmp/to_scwrl_1459743179.seq -o /var/tmp/from_scwrl_1459743179.pdb > /var/tmp/scwrl_1459743179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1459743179.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_932388725.pdb -s /var/tmp/to_scwrl_932388725.seq -o /var/tmp/from_scwrl_932388725.pdb > /var/tmp/scwrl_932388725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932388725.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1725591104.pdb -s /var/tmp/to_scwrl_1725591104.seq -o /var/tmp/from_scwrl_1725591104.pdb > /var/tmp/scwrl_1725591104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1725591104.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_169550210.pdb -s /var/tmp/to_scwrl_169550210.seq -o /var/tmp/from_scwrl_169550210.pdb > /var/tmp/scwrl_169550210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169550210.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1824913068.pdb -s /var/tmp/to_scwrl_1824913068.seq -o /var/tmp/from_scwrl_1824913068.pdb > /var/tmp/scwrl_1824913068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1824913068.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_851708268.pdb -s /var/tmp/to_scwrl_851708268.seq -o /var/tmp/from_scwrl_851708268.pdb > /var/tmp/scwrl_851708268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851708268.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1846133264.pdb -s /var/tmp/to_scwrl_1846133264.seq -o /var/tmp/from_scwrl_1846133264.pdb > /var/tmp/scwrl_1846133264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1846133264.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_315405031.pdb -s /var/tmp/to_scwrl_315405031.seq -o /var/tmp/from_scwrl_315405031.pdb > /var/tmp/scwrl_315405031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315405031.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_843712425.pdb -s /var/tmp/to_scwrl_843712425.seq -o /var/tmp/from_scwrl_843712425.pdb > /var/tmp/scwrl_843712425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843712425.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_322509702.pdb -s /var/tmp/to_scwrl_322509702.seq -o /var/tmp/from_scwrl_322509702.pdb > /var/tmp/scwrl_322509702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322509702.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1702958201.pdb -s /var/tmp/to_scwrl_1702958201.seq -o /var/tmp/from_scwrl_1702958201.pdb > /var/tmp/scwrl_1702958201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1702958201.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2044022114.pdb -s /var/tmp/to_scwrl_2044022114.seq -o /var/tmp/from_scwrl_2044022114.pdb > /var/tmp/scwrl_2044022114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044022114.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_664282640.pdb -s /var/tmp/to_scwrl_664282640.seq -o /var/tmp/from_scwrl_664282640.pdb > /var/tmp/scwrl_664282640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_664282640.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_462307855.pdb -s /var/tmp/to_scwrl_462307855.seq -o /var/tmp/from_scwrl_462307855.pdb > /var/tmp/scwrl_462307855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462307855.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1501701801.pdb -s /var/tmp/to_scwrl_1501701801.seq -o /var/tmp/from_scwrl_1501701801.pdb > /var/tmp/scwrl_1501701801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501701801.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1621752268.pdb -s /var/tmp/to_scwrl_1621752268.seq -o /var/tmp/from_scwrl_1621752268.pdb > /var/tmp/scwrl_1621752268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621752268.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1522521060.pdb -s /var/tmp/to_scwrl_1522521060.seq -o /var/tmp/from_scwrl_1522521060.pdb > /var/tmp/scwrl_1522521060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522521060.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_473006481.pdb -s /var/tmp/to_scwrl_473006481.seq -o /var/tmp/from_scwrl_473006481.pdb > /var/tmp/scwrl_473006481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473006481.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1798189835.pdb -s /var/tmp/to_scwrl_1798189835.seq -o /var/tmp/from_scwrl_1798189835.pdb > /var/tmp/scwrl_1798189835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798189835.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_328808317.pdb -s /var/tmp/to_scwrl_328808317.seq -o /var/tmp/from_scwrl_328808317.pdb > /var/tmp/scwrl_328808317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328808317.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_347513601.pdb -s /var/tmp/to_scwrl_347513601.seq -o /var/tmp/from_scwrl_347513601.pdb > /var/tmp/scwrl_347513601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347513601.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_397385617.pdb -s /var/tmp/to_scwrl_397385617.seq -o /var/tmp/from_scwrl_397385617.pdb > /var/tmp/scwrl_397385617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_397385617.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1957640596.pdb -s /var/tmp/to_scwrl_1957640596.seq -o /var/tmp/from_scwrl_1957640596.pdb > /var/tmp/scwrl_1957640596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1957640596.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1885111251.pdb -s /var/tmp/to_scwrl_1885111251.seq -o /var/tmp/from_scwrl_1885111251.pdb > /var/tmp/scwrl_1885111251.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885111251.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1209278991.pdb -s /var/tmp/to_scwrl_1209278991.seq -o /var/tmp/from_scwrl_1209278991.pdb > /var/tmp/scwrl_1209278991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1209278991.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1142130397.pdb -s /var/tmp/to_scwrl_1142130397.seq -o /var/tmp/from_scwrl_1142130397.pdb > /var/tmp/scwrl_1142130397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1142130397.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1485241219.pdb -s /var/tmp/to_scwrl_1485241219.seq -o /var/tmp/from_scwrl_1485241219.pdb > /var/tmp/scwrl_1485241219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485241219.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1598034639.pdb -s /var/tmp/to_scwrl_1598034639.seq -o /var/tmp/from_scwrl_1598034639.pdb > /var/tmp/scwrl_1598034639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598034639.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_451950815.pdb -s /var/tmp/to_scwrl_451950815.seq -o /var/tmp/from_scwrl_451950815.pdb > /var/tmp/scwrl_451950815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_451950815.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1330826752.pdb -s /var/tmp/to_scwrl_1330826752.seq -o /var/tmp/from_scwrl_1330826752.pdb > /var/tmp/scwrl_1330826752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330826752.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1623224215.pdb -s /var/tmp/to_scwrl_1623224215.seq -o /var/tmp/from_scwrl_1623224215.pdb > /var/tmp/scwrl_1623224215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623224215.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1911693994.pdb -s /var/tmp/to_scwrl_1911693994.seq -o /var/tmp/from_scwrl_1911693994.pdb > /var/tmp/scwrl_1911693994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1911693994.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_115731831.pdb -s /var/tmp/to_scwrl_115731831.seq -o /var/tmp/from_scwrl_115731831.pdb > /var/tmp/scwrl_115731831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115731831.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1201331673.pdb -s /var/tmp/to_scwrl_1201331673.seq -o /var/tmp/from_scwrl_1201331673.pdb > /var/tmp/scwrl_1201331673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201331673.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2081244205.pdb -s /var/tmp/to_scwrl_2081244205.seq -o /var/tmp/from_scwrl_2081244205.pdb > /var/tmp/scwrl_2081244205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081244205.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1940644899.pdb -s /var/tmp/to_scwrl_1940644899.seq -o /var/tmp/from_scwrl_1940644899.pdb > /var/tmp/scwrl_1940644899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940644899.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2053039941.pdb -s /var/tmp/to_scwrl_2053039941.seq -o /var/tmp/from_scwrl_2053039941.pdb > /var/tmp/scwrl_2053039941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2053039941.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1779893822.pdb -s /var/tmp/to_scwrl_1779893822.seq -o /var/tmp/from_scwrl_1779893822.pdb > /var/tmp/scwrl_1779893822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1779893822.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_108566283.pdb -s /var/tmp/to_scwrl_108566283.seq -o /var/tmp/from_scwrl_108566283.pdb > /var/tmp/scwrl_108566283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108566283.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_749268719.pdb -s /var/tmp/to_scwrl_749268719.seq -o /var/tmp/from_scwrl_749268719.pdb > /var/tmp/scwrl_749268719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749268719.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2102403525.pdb -s /var/tmp/to_scwrl_2102403525.seq -o /var/tmp/from_scwrl_2102403525.pdb > /var/tmp/scwrl_2102403525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2102403525.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1811524484.pdb -s /var/tmp/to_scwrl_1811524484.seq -o /var/tmp/from_scwrl_1811524484.pdb > /var/tmp/scwrl_1811524484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811524484.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_645807186.pdb -s /var/tmp/to_scwrl_645807186.seq -o /var/tmp/from_scwrl_645807186.pdb > /var/tmp/scwrl_645807186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_645807186.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_619202518.pdb -s /var/tmp/to_scwrl_619202518.seq -o /var/tmp/from_scwrl_619202518.pdb > /var/tmp/scwrl_619202518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_619202518.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_126348692.pdb -s /var/tmp/to_scwrl_126348692.seq -o /var/tmp/from_scwrl_126348692.pdb > /var/tmp/scwrl_126348692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126348692.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_25340.pdb -s /var/tmp/to_scwrl_25340.seq -o /var/tmp/from_scwrl_25340.pdb > /var/tmp/scwrl_25340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25340.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_93471139.pdb -s /var/tmp/to_scwrl_93471139.seq -o /var/tmp/from_scwrl_93471139.pdb > /var/tmp/scwrl_93471139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93471139.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1648869752.pdb -s /var/tmp/to_scwrl_1648869752.seq -o /var/tmp/from_scwrl_1648869752.pdb > /var/tmp/scwrl_1648869752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1648869752.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_473031821.pdb -s /var/tmp/to_scwrl_473031821.seq -o /var/tmp/from_scwrl_473031821.pdb > /var/tmp/scwrl_473031821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473031821.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1891660974.pdb -s /var/tmp/to_scwrl_1891660974.seq -o /var/tmp/from_scwrl_1891660974.pdb > /var/tmp/scwrl_1891660974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891660974.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1977678069.pdb -s /var/tmp/to_scwrl_1977678069.seq -o /var/tmp/from_scwrl_1977678069.pdb > /var/tmp/scwrl_1977678069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977678069.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_820545422.pdb -s /var/tmp/to_scwrl_820545422.seq -o /var/tmp/from_scwrl_820545422.pdb > /var/tmp/scwrl_820545422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820545422.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_141562944.pdb -s /var/tmp/to_scwrl_141562944.seq -o /var/tmp/from_scwrl_141562944.pdb > /var/tmp/scwrl_141562944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141562944.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1787835019.pdb -s /var/tmp/to_scwrl_1787835019.seq -o /var/tmp/from_scwrl_1787835019.pdb > /var/tmp/scwrl_1787835019.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787835019.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_558173027.pdb -s /var/tmp/to_scwrl_558173027.seq -o /var/tmp/from_scwrl_558173027.pdb > /var/tmp/scwrl_558173027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_558173027.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1350841935.pdb -s /var/tmp/to_scwrl_1350841935.seq -o /var/tmp/from_scwrl_1350841935.pdb > /var/tmp/scwrl_1350841935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350841935.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_782481770.pdb -s /var/tmp/to_scwrl_782481770.seq -o /var/tmp/from_scwrl_782481770.pdb > /var/tmp/scwrl_782481770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_782481770.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2043414246.pdb -s /var/tmp/to_scwrl_2043414246.seq -o /var/tmp/from_scwrl_2043414246.pdb > /var/tmp/scwrl_2043414246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2043414246.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_801392929.pdb -s /var/tmp/to_scwrl_801392929.seq -o /var/tmp/from_scwrl_801392929.pdb > /var/tmp/scwrl_801392929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_801392929.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1234432584.pdb -s /var/tmp/to_scwrl_1234432584.seq -o /var/tmp/from_scwrl_1234432584.pdb > /var/tmp/scwrl_1234432584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234432584.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1226757351.pdb -s /var/tmp/to_scwrl_1226757351.seq -o /var/tmp/from_scwrl_1226757351.pdb > /var/tmp/scwrl_1226757351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1226757351.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_277133497.pdb -s /var/tmp/to_scwrl_277133497.seq -o /var/tmp/from_scwrl_277133497.pdb > /var/tmp/scwrl_277133497.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277133497.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_998642932.pdb -s /var/tmp/to_scwrl_998642932.seq -o /var/tmp/from_scwrl_998642932.pdb > /var/tmp/scwrl_998642932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_998642932.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1342489182.pdb -s /var/tmp/to_scwrl_1342489182.seq -o /var/tmp/from_scwrl_1342489182.pdb > /var/tmp/scwrl_1342489182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1342489182.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1478465170.pdb -s /var/tmp/to_scwrl_1478465170.seq -o /var/tmp/from_scwrl_1478465170.pdb > /var/tmp/scwrl_1478465170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478465170.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_932403490.pdb -s /var/tmp/to_scwrl_932403490.seq -o /var/tmp/from_scwrl_932403490.pdb > /var/tmp/scwrl_932403490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932403490.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1135650434.pdb -s /var/tmp/to_scwrl_1135650434.seq -o /var/tmp/from_scwrl_1135650434.pdb > /var/tmp/scwrl_1135650434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135650434.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1384021464.pdb -s /var/tmp/to_scwrl_1384021464.seq -o /var/tmp/from_scwrl_1384021464.pdb > /var/tmp/scwrl_1384021464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384021464.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_564813666.pdb -s /var/tmp/to_scwrl_564813666.seq -o /var/tmp/from_scwrl_564813666.pdb > /var/tmp/scwrl_564813666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_564813666.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1244216717.pdb -s /var/tmp/to_scwrl_1244216717.seq -o /var/tmp/from_scwrl_1244216717.pdb > /var/tmp/scwrl_1244216717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244216717.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2133290183.pdb -s /var/tmp/to_scwrl_2133290183.seq -o /var/tmp/from_scwrl_2133290183.pdb > /var/tmp/scwrl_2133290183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2133290183.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)G90.O and (T0292)D91.N only 0.000 apart, marking (T0292)D91.N as missing WARNING: atoms too close: (T0292)L92.O and (T0292)A93.N only 0.000 apart, marking (T0292)A93.N as missing WARNING: atoms too close: (T0292)S199.O and (T0292)L200.N only 0.000 apart, marking (T0292)L200.N as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_519733544.pdb -s /var/tmp/to_scwrl_519733544.seq -o /var/tmp/from_scwrl_519733544.pdb > /var/tmp/scwrl_519733544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519733544.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_908257555.pdb -s /var/tmp/to_scwrl_908257555.seq -o /var/tmp/from_scwrl_908257555.pdb > /var/tmp/scwrl_908257555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_908257555.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_631613722.pdb -s /var/tmp/to_scwrl_631613722.seq -o /var/tmp/from_scwrl_631613722.pdb > /var/tmp/scwrl_631613722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631613722.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1138936061.pdb -s /var/tmp/to_scwrl_1138936061.seq -o /var/tmp/from_scwrl_1138936061.pdb > /var/tmp/scwrl_1138936061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1138936061.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1034606247.pdb -s /var/tmp/to_scwrl_1034606247.seq -o /var/tmp/from_scwrl_1034606247.pdb > /var/tmp/scwrl_1034606247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1034606247.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_631639062.pdb -s /var/tmp/to_scwrl_631639062.seq -o /var/tmp/from_scwrl_631639062.pdb > /var/tmp/scwrl_631639062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631639062.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1232407201.pdb -s /var/tmp/to_scwrl_1232407201.seq -o /var/tmp/from_scwrl_1232407201.pdb > /var/tmp/scwrl_1232407201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232407201.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_535992353.pdb -s /var/tmp/to_scwrl_535992353.seq -o /var/tmp/from_scwrl_535992353.pdb > /var/tmp/scwrl_535992353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535992353.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1104670882.pdb -s /var/tmp/to_scwrl_1104670882.seq -o /var/tmp/from_scwrl_1104670882.pdb > /var/tmp/scwrl_1104670882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1104670882.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_976584529.pdb -s /var/tmp/to_scwrl_976584529.seq -o /var/tmp/from_scwrl_976584529.pdb > /var/tmp/scwrl_976584529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976584529.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_366186775.pdb -s /var/tmp/to_scwrl_366186775.seq -o /var/tmp/from_scwrl_366186775.pdb > /var/tmp/scwrl_366186775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_366186775.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1925216305.pdb -s /var/tmp/to_scwrl_1925216305.seq -o /var/tmp/from_scwrl_1925216305.pdb > /var/tmp/scwrl_1925216305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1925216305.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1118147473.pdb -s /var/tmp/to_scwrl_1118147473.seq -o /var/tmp/from_scwrl_1118147473.pdb > /var/tmp/scwrl_1118147473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118147473.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_6538147.pdb -s /var/tmp/to_scwrl_6538147.seq -o /var/tmp/from_scwrl_6538147.pdb > /var/tmp/scwrl_6538147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6538147.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_335905685.pdb -s /var/tmp/to_scwrl_335905685.seq -o /var/tmp/from_scwrl_335905685.pdb > /var/tmp/scwrl_335905685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335905685.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_321505762.pdb -s /var/tmp/to_scwrl_321505762.seq -o /var/tmp/from_scwrl_321505762.pdb > /var/tmp/scwrl_321505762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_321505762.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_789019917.pdb -s /var/tmp/to_scwrl_789019917.seq -o /var/tmp/from_scwrl_789019917.pdb > /var/tmp/scwrl_789019917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_789019917.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_231836284.pdb -s /var/tmp/to_scwrl_231836284.seq -o /var/tmp/from_scwrl_231836284.pdb > /var/tmp/scwrl_231836284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_231836284.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 54.0398 sec, elapsed time= 1003.93 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -105.941 shub_TS1 costs 0 real_cost = -88.417 nFOLD_TS5-scwrl costs 0 real_cost = -158.634 nFOLD_TS5 costs 0 real_cost = -36.5985 nFOLD_TS4-scwrl costs 0 real_cost = -118.575 nFOLD_TS4 costs 0 real_cost = 12.6663 nFOLD_TS3-scwrl costs 0 real_cost = -123.159 nFOLD_TS3 costs 0 real_cost = 18.1012 nFOLD_TS2-scwrl costs 0 real_cost = -3.06651 nFOLD_TS2 costs 0 real_cost = 153.747 nFOLD_TS1-scwrl costs 0 real_cost = -107.584 nFOLD_TS1 costs 0 real_cost = 25.2283 mGen-3D_TS1-scwrl costs 0 real_cost = -156.501 mGen-3D_TS1 costs 0 real_cost = -29.3834 keasar-server_TS5-scwrl costs 0 real_cost = -147.757 keasar-server_TS5 costs 0 real_cost = -137.214 keasar-server_TS4-scwrl costs 0 real_cost = -162.538 keasar-server_TS4 costs 0 real_cost = -156.756 keasar-server_TS3-scwrl costs 0 real_cost = -145.705 keasar-server_TS3 costs 0 real_cost = -133.907 keasar-server_TS2-scwrl costs 0 real_cost = -137.178 keasar-server_TS2 costs 0 real_cost = -141.993 keasar-server_TS1-scwrl costs 0 real_cost = -156.925 keasar-server_TS1 costs 0 real_cost = -165.488 karypis.srv_TS5-scwrl costs 0 real_cost = -231.969 karypis.srv_TS5 costs 0 real_cost = -229.598 karypis.srv_TS4-scwrl costs 0 real_cost = -202.752 karypis.srv_TS4 costs 0 real_cost = -202.497 karypis.srv_TS3-scwrl costs 0 real_cost = -153.564 karypis.srv_TS3 costs 0 real_cost = -153.761 karypis.srv_TS2-scwrl costs 0 real_cost = -119.274 karypis.srv_TS2 costs 0 real_cost = -120.874 karypis.srv_TS1-scwrl costs 0 real_cost = -130.932 karypis.srv_TS1 costs 0 real_cost = -136.984 karypis.srv.4_TS1-scwrl costs 0 real_cost = 274.365 karypis.srv.4_TS1 costs 0 real_cost = 274.381 karypis.srv.2_TS5-scwrl costs 0 real_cost = 303.148 karypis.srv.2_TS5 costs 0 real_cost = 303.148 karypis.srv.2_TS4-scwrl costs 0 real_cost = 300.559 karypis.srv.2_TS4 costs 0 real_cost = 300.559 karypis.srv.2_TS3-scwrl costs 0 real_cost = 309.924 karypis.srv.2_TS3 costs 0 real_cost = 309.924 karypis.srv.2_TS2-scwrl costs 0 real_cost = -164.734 karypis.srv.2_TS2 costs 0 real_cost = -164.734 karypis.srv.2_TS1-scwrl costs 0 real_cost = -136.825 karypis.srv.2_TS1 costs 0 real_cost = -136.825 gtg_AL5-scwrl costs 0 real_cost = -39.3271 gtg_AL5 costs 0 real_cost = 96.7067 gtg_AL4-scwrl costs 0 real_cost = -146.407 gtg_AL4 costs 0 real_cost = 16.3837 gtg_AL3-scwrl costs 0 real_cost = -132.531 gtg_AL3 costs 0 real_cost = 33.7377 gtg_AL2-scwrl costs 0 real_cost = -104.859 gtg_AL2 costs 0 real_cost = 69.8989 gtg_AL1-scwrl costs 0 real_cost = -115.752 gtg_AL1 costs 0 real_cost = 52.9523 forecast-s_AL5-scwrl costs 0 real_cost = 4.23346 forecast-s_AL5 costs 0 real_cost = 149.842 forecast-s_AL4-scwrl costs 0 real_cost = -84.9256 forecast-s_AL4 costs 0 real_cost = 87.3485 forecast-s_AL3-scwrl costs 0 real_cost = -110.831 forecast-s_AL3 costs 0 real_cost = 54.3403 forecast-s_AL2-scwrl costs 0 real_cost = -153.754 forecast-s_AL2 costs 0 real_cost = 16.581 forecast-s_AL1-scwrl costs 0 real_cost = -111.6 forecast-s_AL1 costs 0 real_cost = 38.4047 beautshotbase_TS1-scwrl costs 0 real_cost = -155.252 beautshotbase_TS1 costs 0 real_cost = -144.356 beautshot_TS1-scwrl costs 0 real_cost = -90.3207 beautshot_TS1 costs 0 real_cost = -73.9165 Zhang-Server_TS5-scwrl costs 0 real_cost = -214.08 Zhang-Server_TS5 costs 0 real_cost = -214.106 Zhang-Server_TS4-scwrl costs 0 real_cost = -237.146 Zhang-Server_TS4 costs 0 real_cost = -234.467 Zhang-Server_TS3-scwrl costs 0 real_cost = -214.404 Zhang-Server_TS3 costs 0 real_cost = -208.941 Zhang-Server_TS2-scwrl costs 0 real_cost = -170.294 Zhang-Server_TS2 costs 0 real_cost = -163.768 Zhang-Server_TS1-scwrl costs 0 real_cost = -210.944 Zhang-Server_TS1 costs 0 real_cost = -212.081 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -91.6902 UNI-EID_sfst_AL5 costs 0 real_cost = 86.5999 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -129.92 UNI-EID_sfst_AL4 costs 0 real_cost = 53.8509 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -133.937 UNI-EID_sfst_AL3 costs 0 real_cost = 42.9175 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -99.6633 UNI-EID_sfst_AL2 costs 0 real_cost = 59.6404 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -80.8276 UNI-EID_sfst_AL1 costs 0 real_cost = 96.4577 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -7.92214 UNI-EID_expm_TS1 costs 0 real_cost = -7.90515 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -92.6593 UNI-EID_bnmx_TS5 costs 0 real_cost = 97.1193 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -131.357 UNI-EID_bnmx_TS4 costs 0 real_cost = 55.3299 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -135.969 UNI-EID_bnmx_TS3 costs 0 real_cost = 42.4485 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -109.472 UNI-EID_bnmx_TS2 costs 0 real_cost = 55.6404 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -83.3235 UNI-EID_bnmx_TS1 costs 0 real_cost = 97.2438 SPARKS2_TS5-scwrl costs 0 real_cost = -217.769 SPARKS2_TS5 costs 0 real_cost = -206.743 SPARKS2_TS4-scwrl costs 0 real_cost = -115.557 SPARKS2_TS4 costs 0 real_cost = -98.3748 SPARKS2_TS3-scwrl costs 0 real_cost = -154.384 SPARKS2_TS3 costs 0 real_cost = -143.939 SPARKS2_TS2-scwrl costs 0 real_cost = -189.917 SPARKS2_TS2 costs 0 real_cost = -187.478 SPARKS2_TS1-scwrl costs 0 real_cost = -220.89 SPARKS2_TS1 costs 0 real_cost = -208.084 SP4_TS5-scwrl costs 0 real_cost = -173.261 SP4_TS5 costs 0 real_cost = -170.149 SP4_TS4-scwrl costs 0 real_cost = -204.077 SP4_TS4 costs 0 real_cost = -208.259 SP4_TS3-scwrl costs 0 real_cost = -208.559 SP4_TS3 costs 0 real_cost = -197.743 SP4_TS2-scwrl costs 0 real_cost = -216.734 SP4_TS2 costs 0 real_cost = -214.734 SP4_TS1-scwrl costs 0 real_cost = -205.361 SP4_TS1 costs 0 real_cost = -201.063 SP3_TS5-scwrl costs 0 real_cost = -202.897 SP3_TS5 costs 0 real_cost = -195.68 SP3_TS4-scwrl costs 0 real_cost = -199.514 SP3_TS4 costs 0 real_cost = -215.048 SP3_TS3-scwrl costs 0 real_cost = -218.546 SP3_TS3 costs 0 real_cost = -207.578 SP3_TS2-scwrl costs 0 real_cost = -186.014 SP3_TS2 costs 0 real_cost = -176.289 SP3_TS1-scwrl costs 0 real_cost = -197.948 SP3_TS1 costs 0 real_cost = -195.812 SAM_T06_server_TS5-scwrl costs 0 real_cost = -50.8541 SAM_T06_server_TS5 costs 0 real_cost = -86.9006 SAM_T06_server_TS4-scwrl costs 0 real_cost = -140.958 SAM_T06_server_TS4 costs 0 real_cost = -173.193 SAM_T06_server_TS3-scwrl costs 0 real_cost = 35.5223 SAM_T06_server_TS3 costs 0 real_cost = -55.1537 SAM_T06_server_TS2-scwrl costs 0 real_cost = 180.772 SAM_T06_server_TS2 costs 0 real_cost = 45.9867 SAM_T06_server_TS1-scwrl costs 0 real_cost = -214.721 SAM_T06_server_TS1 costs 0 real_cost = -218.807 SAM-T99_AL5-scwrl costs 0 real_cost = -153.887 SAM-T99_AL5 costs 0 real_cost = 13.1147 SAM-T99_AL4-scwrl costs 0 real_cost = -144.488 SAM-T99_AL4 costs 0 real_cost = 27.397 SAM-T99_AL3-scwrl costs 0 real_cost = -134.078 SAM-T99_AL3 costs 0 real_cost = 23.403 SAM-T99_AL2-scwrl costs 0 real_cost = -133.382 SAM-T99_AL2 costs 0 real_cost = 35.7613 SAM-T99_AL1-scwrl costs 0 real_cost = -126.165 SAM-T99_AL1 costs 0 real_cost = 33.9421 SAM-T02_AL5-scwrl costs 0 real_cost = -60.1456 SAM-T02_AL5 costs 0 real_cost = 137.1 SAM-T02_AL4-scwrl costs 0 real_cost = -112.671 SAM-T02_AL4 costs 0 real_cost = 44.566 SAM-T02_AL3-scwrl costs 0 real_cost = -110.012 SAM-T02_AL3 costs 0 real_cost = 38.3518 SAM-T02_AL2-scwrl costs 0 real_cost = -148.606 SAM-T02_AL2 costs 0 real_cost = 10.0747 SAM-T02_AL1-scwrl costs 0 real_cost = -139.229 SAM-T02_AL1 costs 0 real_cost = 20.7696 ROKKY_TS5-scwrl costs 0 real_cost = -167.734 ROKKY_TS5 costs 0 real_cost = -162.536 ROKKY_TS4-scwrl costs 0 real_cost = -166.047 ROKKY_TS4 costs 0 real_cost = -178.371 ROKKY_TS3-scwrl costs 0 real_cost = -138.732 ROKKY_TS3 costs 0 real_cost = -131.197 ROKKY_TS2-scwrl costs 0 real_cost = -127.503 ROKKY_TS2 costs 0 real_cost = -115.913 ROKKY_TS1-scwrl costs 0 real_cost = -90.7745 ROKKY_TS1 costs 0 real_cost = -84.4083 ROBETTA_TS5-scwrl costs 0 real_cost = -167.848 ROBETTA_TS5 costs 0 real_cost = -164.38 ROBETTA_TS4-scwrl costs 0 real_cost = -165.817 ROBETTA_TS4 costs 0 real_cost = -158.947 ROBETTA_TS3-scwrl costs 0 real_cost = -181.225 ROBETTA_TS3 costs 0 real_cost = -174.719 ROBETTA_TS2-scwrl costs 0 real_cost = -231.603 ROBETTA_TS2 costs 0 real_cost = -230.198 ROBETTA_TS1-scwrl costs 0 real_cost = -184.955 ROBETTA_TS1 costs 0 real_cost = -174.641 RAPTOR_TS5-scwrl costs 0 real_cost = -247.608 RAPTOR_TS5 costs 0 real_cost = -240.084 RAPTOR_TS4-scwrl costs 0 real_cost = -191.863 RAPTOR_TS4 costs 0 real_cost = -188.78 RAPTOR_TS3-scwrl costs 0 real_cost = -207.788 RAPTOR_TS3 costs 0 real_cost = -205.499 RAPTOR_TS2-scwrl costs 0 real_cost = -141.506 RAPTOR_TS2 costs 0 real_cost = -147.143 RAPTOR_TS1-scwrl costs 0 real_cost = -151.495 RAPTOR_TS1 costs 0 real_cost = -138.944 RAPTORESS_TS5-scwrl costs 0 real_cost = -134.737 RAPTORESS_TS5 costs 0 real_cost = -124.828 RAPTORESS_TS4-scwrl costs 0 real_cost = -234.704 RAPTORESS_TS4 costs 0 real_cost = -219.643 RAPTORESS_TS3-scwrl costs 0 real_cost = -183.998 RAPTORESS_TS3 costs 0 real_cost = -177.237 RAPTORESS_TS2-scwrl costs 0 real_cost = -211.641 RAPTORESS_TS2 costs 0 real_cost = -204.213 RAPTORESS_TS1-scwrl costs 0 real_cost = -9.61858 RAPTORESS_TS1 costs 0 real_cost = -8.24213 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -213.199 RAPTOR-ACE_TS5 costs 0 real_cost = -213.131 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -211.848 RAPTOR-ACE_TS4 costs 0 real_cost = -197.303 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -166.211 RAPTOR-ACE_TS3 costs 0 real_cost = -160.055 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -197.948 RAPTOR-ACE_TS2 costs 0 real_cost = -195.812 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -193.456 RAPTOR-ACE_TS1 costs 0 real_cost = -181.997 Pmodeller6_TS5-scwrl costs 0 real_cost = -130.747 Pmodeller6_TS5 costs 0 real_cost = -134.894 Pmodeller6_TS4-scwrl costs 0 real_cost = -132.844 Pmodeller6_TS4 costs 0 real_cost = -142.9 Pmodeller6_TS3-scwrl costs 0 real_cost = -133.573 Pmodeller6_TS3 costs 0 real_cost = -134.194 Pmodeller6_TS2-scwrl costs 0 real_cost = -128.407 Pmodeller6_TS2 costs 0 real_cost = -123.586 Pmodeller6_TS1-scwrl costs 0 real_cost = -128.407 Pmodeller6_TS1 costs 0 real_cost = -123.586 Phyre-2_TS5-scwrl costs 0 real_cost = -120.459 Phyre-2_TS5 costs 0 real_cost = -150.807 Phyre-2_TS4-scwrl costs 0 real_cost = -109.29 Phyre-2_TS4 costs 0 real_cost = -149.52 Phyre-2_TS3-scwrl costs 0 real_cost = -123.059 Phyre-2_TS3 costs 0 real_cost = -153.806 Phyre-2_TS2-scwrl costs 0 real_cost = -120.448 Phyre-2_TS2 costs 0 real_cost = -150.807 Phyre-2_TS1-scwrl costs 0 real_cost = -108.922 Phyre-2_TS1 costs 0 real_cost = -113.984 Phyre-1_TS1-scwrl costs 0 real_cost = 72.5537 Phyre-1_TS1 costs 0 real_cost = 36.9646 Pcons6_TS5-scwrl costs 0 real_cost = -143.034 Pcons6_TS5 costs 0 real_cost = -143.034 Pcons6_TS4-scwrl costs 0 real_cost = -156.818 Pcons6_TS4 costs 0 real_cost = -155.958 Pcons6_TS3-scwrl costs 0 real_cost = -118.582 Pcons6_TS3 costs 0 real_cost = -120.601 Pcons6_TS2-scwrl costs 0 real_cost = -135.944 Pcons6_TS2 costs 0 real_cost = -135.806 Pcons6_TS1-scwrl costs 0 real_cost = -106.967 Pcons6_TS1 costs 0 real_cost = -110.403 PROTINFO_TS5-scwrl costs 0 real_cost = -165.462 PROTINFO_TS5 costs 0 real_cost = -154.396 PROTINFO_TS4-scwrl costs 0 real_cost = -196.16 PROTINFO_TS4 costs 0 real_cost = -197.95 PROTINFO_TS3-scwrl costs 0 real_cost = -141.806 PROTINFO_TS3 costs 0 real_cost = -138.859 PROTINFO_TS2-scwrl costs 0 real_cost = -155.934 PROTINFO_TS2 costs 0 real_cost = -154.512 PROTINFO_TS1-scwrl costs 0 real_cost = -151.271 PROTINFO_TS1 costs 0 real_cost = -157.117 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -178.277 PROTINFO-AB_TS5 costs 0 real_cost = -170.677 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -177.422 PROTINFO-AB_TS4 costs 0 real_cost = -166.118 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -171.614 PROTINFO-AB_TS3 costs 0 real_cost = -166.527 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -193.907 PROTINFO-AB_TS2 costs 0 real_cost = -192.537 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -163.066 PROTINFO-AB_TS1 costs 0 real_cost = -160.094 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -140.041 NN_PUT_lab_TS1 costs 0 real_cost = -155.432 MetaTasser_TS5-scwrl costs 0 real_cost = 168.605 MetaTasser_TS5 costs 0 real_cost = 166.651 MetaTasser_TS4-scwrl costs 0 real_cost = 45.6141 MetaTasser_TS4 costs 0 real_cost = 28.9933 MetaTasser_TS3-scwrl costs 0 real_cost = 107.455 MetaTasser_TS3 costs 0 real_cost = 116.151 MetaTasser_TS2-scwrl costs 0 real_cost = 189.201 MetaTasser_TS2 costs 0 real_cost = 187.729 MetaTasser_TS1-scwrl costs 0 real_cost = 159.805 MetaTasser_TS1 costs 0 real_cost = 164.894 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -118.201 Ma-OPUS-server_TS5 costs 0 real_cost = -120.943 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -191.116 Ma-OPUS-server_TS4 costs 0 real_cost = -187.743 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -183.107 Ma-OPUS-server_TS3 costs 0 real_cost = -185.548 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -135.099 Ma-OPUS-server_TS2 costs 0 real_cost = -134.009 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -194.088 Ma-OPUS-server_TS1 costs 0 real_cost = -180.049 MIG_FROST_AL1-scwrl costs 0 real_cost = -138.615 MIG_FROST_AL1 costs 0 real_cost = -138.615 LOOPP_TS5 costs 0 real_cost = -148.389 LOOPP_TS4-scwrl costs 0 real_cost = -196.911 LOOPP_TS4 costs 0 real_cost = -196.111 LOOPP_TS3-scwrl costs 0 real_cost = -207.158 LOOPP_TS3 costs 0 real_cost = -200.71 LOOPP_TS2-scwrl costs 0 real_cost = -150.005 LOOPP_TS2 costs 0 real_cost = -156.452 LOOPP_TS1-scwrl costs 0 real_cost = -163.719 LOOPP_TS1 costs 0 real_cost = -171.923 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -101.987 Huber-Torda-Server_TS5 costs 0 real_cost = 22.2576 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -166.129 Huber-Torda-Server_TS4 costs 0 real_cost = -27.2477 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -171.692 Huber-Torda-Server_TS3 costs 0 real_cost = -37.7344 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -99.9444 Huber-Torda-Server_TS2 costs 0 real_cost = 16.7608 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -169.226 Huber-Torda-Server_TS1 costs 0 real_cost = -37.0364 HHpred3_TS1-scwrl costs 0 real_cost = -206.623 HHpred3_TS1 costs 0 real_cost = -205.561 HHpred2_TS1-scwrl costs 0 real_cost = -206.623 HHpred2_TS1 costs 0 real_cost = -205.561 HHpred1_TS1-scwrl costs 0 real_cost = -201.935 HHpred1_TS1 costs 0 real_cost = -205.679 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -165.07 GeneSilicoMetaServer_TS5 costs 0 real_cost = -168.079 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -183.077 GeneSilicoMetaServer_TS3 costs 0 real_cost = -175.95 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -207.746 GeneSilicoMetaServer_TS2 costs 0 real_cost = -189.223 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -213.076 GeneSilicoMetaServer_TS1 costs 0 real_cost = -206.402 Frankenstein_TS2-scwrl costs 0 real_cost = -226.854 Frankenstein_TS2 costs 0 real_cost = -227.551 Frankenstein_TS1-scwrl costs 0 real_cost = -156.57 Frankenstein_TS1 costs 0 real_cost = -166.685 FUNCTION_TS5-scwrl costs 0 real_cost = -186.558 FUNCTION_TS5 costs 0 real_cost = -204.863 FUNCTION_TS4-scwrl costs 0 real_cost = -182.445 FUNCTION_TS4 costs 0 real_cost = -193.945 FUNCTION_TS3-scwrl costs 0 real_cost = -177.268 FUNCTION_TS3 costs 0 real_cost = -193.508 FUNCTION_TS2-scwrl costs 0 real_cost = -190.718 FUNCTION_TS2 costs 0 real_cost = -204.087 FUNCTION_TS1-scwrl costs 0 real_cost = -197.821 FUNCTION_TS1 costs 0 real_cost = -204.383 FUGUE_AL5-scwrl costs 0 real_cost = -161.508 FUGUE_AL5 costs 0 real_cost = 21.6269 FUGUE_AL4-scwrl costs 0 real_cost = -145.896 FUGUE_AL4 costs 0 real_cost = 46.0162 FUGUE_AL3-scwrl costs 0 real_cost = -197.416 FUGUE_AL3 costs 0 real_cost = -5.24428 FUGUE_AL2-scwrl costs 0 real_cost = 115.916 FUGUE_AL2 costs 0 real_cost = 224.103 FUGUE_AL1-scwrl costs 0 real_cost = 22.419 FUGUE_AL1 costs 0 real_cost = 166.627 FUGMOD_TS5-scwrl costs 0 real_cost = -177.961 FUGMOD_TS5 costs 0 real_cost = -185.382 FUGMOD_TS4-scwrl costs 0 real_cost = -171.59 FUGMOD_TS4 costs 0 real_cost = -168.358 FUGMOD_TS3-scwrl costs 0 real_cost = -224.106 FUGMOD_TS3 costs 0 real_cost = -210.311 FUGMOD_TS2-scwrl costs 0 real_cost = -94.144 FUGMOD_TS2 costs 0 real_cost = -81.8908 FUGMOD_TS1-scwrl costs 0 real_cost = -159.408 FUGMOD_TS1 costs 0 real_cost = -143.318 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 324.402 FPSOLVER-SERVER_TS1 costs 0 real_cost = 323.154 FORTE2_AL5-scwrl costs 0 real_cost = -111.844 FORTE2_AL5 costs 0 real_cost = 85.7684 FORTE2_AL4-scwrl costs 0 real_cost = -140.262 FORTE2_AL4 costs 0 real_cost = 27.8711 FORTE2_AL3-scwrl costs 0 real_cost = -166.367 FORTE2_AL3 costs 0 real_cost = 18.4417 FORTE2_AL2-scwrl costs 0 real_cost = -117.859 FORTE2_AL2 costs 0 real_cost = 65.0989 FORTE2_AL1-scwrl costs 0 real_cost = -131.293 FORTE2_AL1 costs 0 real_cost = 65.5402 FORTE1_AL5-scwrl costs 0 real_cost = -89.4627 FORTE1_AL5 costs 0 real_cost = 100.942 FORTE1_AL4-scwrl costs 0 real_cost = -117.859 FORTE1_AL4 costs 0 real_cost = 65.0989 FORTE1_AL3-scwrl costs 0 real_cost = -119.6 FORTE1_AL3 costs 0 real_cost = 63.3374 FORTE1_AL2-scwrl costs 0 real_cost = -140.505 FORTE1_AL2 costs 0 real_cost = 30.9187 FORTE1_AL1-scwrl costs 0 real_cost = -131.293 FORTE1_AL1 costs 0 real_cost = 65.5402 FOLDpro_TS5-scwrl costs 0 real_cost = -122.215 FOLDpro_TS5 costs 0 real_cost = -117.15 FOLDpro_TS4-scwrl costs 0 real_cost = 78.3297 FOLDpro_TS4 costs 0 real_cost = 89.1581 FOLDpro_TS3-scwrl costs 0 real_cost = 246.811 FOLDpro_TS3 costs 0 real_cost = 248.545 FOLDpro_TS2-scwrl costs 0 real_cost = 181.538 FOLDpro_TS2 costs 0 real_cost = 188.111 FOLDpro_TS1-scwrl costs 0 real_cost = -237.048 FOLDpro_TS1 costs 0 real_cost = -239.69 FAMS_TS5-scwrl costs 0 real_cost = -170.596 FAMS_TS5 costs 0 real_cost = -159.938 FAMS_TS4-scwrl costs 0 real_cost = -114.001 FAMS_TS4 costs 0 real_cost = -112.978 FAMS_TS3-scwrl costs 0 real_cost = -195.325 FAMS_TS3 costs 0 real_cost = -176.113 FAMS_TS2-scwrl costs 0 real_cost = -173.28 FAMS_TS2 costs 0 real_cost = -185.278 FAMS_TS1-scwrl costs 0 real_cost = -183.896 FAMS_TS1 costs 0 real_cost = -190.637 FAMSD_TS5-scwrl costs 0 real_cost = -129.606 FAMSD_TS5 costs 0 real_cost = -134.467 FAMSD_TS4-scwrl costs 0 real_cost = -136.419 FAMSD_TS4 costs 0 real_cost = -113.52 FAMSD_TS3-scwrl costs 0 real_cost = -155.924 FAMSD_TS3 costs 0 real_cost = -168.494 FAMSD_TS2-scwrl costs 0 real_cost = -114.001 FAMSD_TS2 costs 0 real_cost = -112.978 FAMSD_TS1-scwrl costs 0 real_cost = -133.847 FAMSD_TS1 costs 0 real_cost = -133.898 Distill_TS5-scwrl costs 0 real_cost = 405.514 Distill_TS4-scwrl costs 0 real_cost = 417.491 Distill_TS3-scwrl costs 0 real_cost = 399.343 Distill_TS2-scwrl costs 0 real_cost = 377.336 Distill_TS1-scwrl costs 0 real_cost = 375.221 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -83.0196 CaspIta-FOX_TS5 costs 0 real_cost = -79.6027 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -158.161 CaspIta-FOX_TS4 costs 0 real_cost = -163.097 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -101.679 CaspIta-FOX_TS3 costs 0 real_cost = -102.372 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -149.602 CaspIta-FOX_TS2 costs 0 real_cost = -147.207 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -130.462 CaspIta-FOX_TS1 costs 0 real_cost = -123.889 CIRCLE_TS5-scwrl costs 0 real_cost = -155.924 CIRCLE_TS5 costs 0 real_cost = -168.494 CIRCLE_TS4-scwrl costs 0 real_cost = -170.596 CIRCLE_TS4 costs 0 real_cost = -159.938 CIRCLE_TS3-scwrl costs 0 real_cost = -183.896 CIRCLE_TS3 costs 0 real_cost = -190.637 CIRCLE_TS2-scwrl costs 0 real_cost = -195.325 CIRCLE_TS2 costs 0 real_cost = -176.113 CIRCLE_TS1-scwrl costs 0 real_cost = -173.28 CIRCLE_TS1 costs 0 real_cost = -185.278 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -194.949 Bilab-ENABLE_TS5 costs 0 real_cost = -194.949 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -167.204 Bilab-ENABLE_TS4 costs 0 real_cost = -167.204 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -76.6887 Bilab-ENABLE_TS3 costs 0 real_cost = -76.6887 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -164.83 Bilab-ENABLE_TS2 costs 0 real_cost = -164.83 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -171.832 Bilab-ENABLE_TS1 costs 0 real_cost = -171.832 BayesHH_TS1-scwrl costs 0 real_cost = -219.916 BayesHH_TS1 costs 0 real_cost = -211.448 ABIpro_TS5-scwrl costs 0 real_cost = 218.828 ABIpro_TS5 costs 0 real_cost = 218.828 ABIpro_TS4-scwrl costs 0 real_cost = 221.776 ABIpro_TS4 costs 0 real_cost = 222.376 ABIpro_TS3-scwrl costs 0 real_cost = 167.826 ABIpro_TS3 costs 0 real_cost = 167.821 ABIpro_TS2-scwrl costs 0 real_cost = 206.958 ABIpro_TS2 costs 0 real_cost = 205.07 ABIpro_TS1-scwrl costs 0 real_cost = 213.238 ABIpro_TS1 costs 0 real_cost = 213.238 3Dpro_TS5-scwrl costs 0 real_cost = -107.285 3Dpro_TS5 costs 0 real_cost = -110.536 3Dpro_TS4-scwrl costs 0 real_cost = -41.1462 3Dpro_TS4 costs 0 real_cost = -31.0906 3Dpro_TS3-scwrl costs 0 real_cost = 170.199 3Dpro_TS3 costs 0 real_cost = 169.681 3Dpro_TS2-scwrl costs 0 real_cost = -88.685 3Dpro_TS2 costs 0 real_cost = -61.6288 3Dpro_TS1-scwrl costs 0 real_cost = -235.896 3Dpro_TS1 costs 0 real_cost = -236.526 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -133.357 3D-JIGSAW_TS5 costs 0 real_cost = -121.94 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -155.264 3D-JIGSAW_TS4 costs 0 real_cost = -151.094 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -141.174 3D-JIGSAW_TS3 costs 0 real_cost = -141.966 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -142.018 3D-JIGSAW_TS2 costs 0 real_cost = -128.847 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -159.346 3D-JIGSAW_TS1 costs 0 real_cost = -148.972 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -134.194 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -140.759 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -125.713 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -130.067 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -134.974 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -131.553 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -125.756 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -118.892 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -129.766 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -117.34 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -150.476 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -155.971 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -151.186 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -156.373 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -135.884 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -142.786 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -149.46 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -156.558 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -136.974 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -144.014 chimera-try5-server.pdb.gz costs 0 real_cost = -201.395 T0292.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -190.945 T0292.try7-opt2.pdb.gz costs 0 real_cost = -198.683 T0292.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -195.541 T0292.try7-opt1.pdb.gz costs 0 real_cost = -199.017 T0292.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -197.208 T0292.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -192.573 T0292.try6-opt2.pdb.gz costs 0 real_cost = -199.418 T0292.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -196.711 T0292.try6-opt1.pdb.gz costs 0 real_cost = -200.933 T0292.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -199.857 T0292.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -189.054 T0292.try5-opt2.pdb.gz costs 0 real_cost = -201.44 T0292.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -199.652 T0292.try5-opt1.pdb.gz costs 0 real_cost = -196.721 T0292.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -197.998 T0292.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -190.246 T0292.try4-opt2.pdb.gz costs 0 real_cost = -198.269 T0292.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -198.738 T0292.try4-opt1.pdb.gz costs 0 real_cost = -199.084 T0292.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -198.1 T0292.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -199.164 T0292.try3-opt2.pdb.gz costs 0 real_cost = -201.157 T0292.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -196.648 T0292.try3-opt1.pdb.gz costs 0 real_cost = -203.073 T0292.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -206.663 T0292.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -200.29 T0292.try2-opt2.pdb.gz costs 0 real_cost = -205.341 T0292.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -200.637 T0292.try2-opt1.pdb.gz costs 0 real_cost = -201.474 T0292.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -203.383 T0292.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -209.629 T0292.try1-opt2.pdb.gz costs 0 real_cost = -215.495 T0292.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -216.63 T0292.try1-opt1.pdb.gz costs 0 real_cost = -204.39 T0292.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -203.216 ../model5.ts-submitted costs 0 real_cost = -15.8569 ../model4.ts-submitted costs 0 real_cost = -218.811 ../model3.ts-submitted costs 0 real_cost = -201.585 ../model2.ts-submitted costs 0 real_cost = -189.061 ../model1.ts-submitted costs 0 real_cost = -198.684 align5 costs 0 real_cost = -86.559 align4 costs 0 real_cost = -67.1015 align3 costs 0 real_cost = -64.6847 align2 costs 0 real_cost = -64.0031 align1 costs 0 real_cost = -48.556 T0292.try1-opt2.pdb costs 0 real_cost = -215.495 model5-scwrl costs 0 real_cost = 124.194 model5.ts-submitted costs 0 real_cost = -15.8569 model4-scwrl costs 0 real_cost = -214.731 model4.ts-submitted costs 0 real_cost = -218.811 model3-scwrl costs 0 real_cost = -205.955 model3.ts-submitted costs 0 real_cost = -201.585 model2-scwrl costs 0 real_cost = -198.804 model2.ts-submitted costs 0 real_cost = -189.061 model1-scwrl costs 0 real_cost = -194.81 model1.ts-submitted costs 0 real_cost = -198.684 T0292_1.real.pdb costs 0 real_cost = -566.6 # command:CPU_time= 181.24 sec, elapsed time= 1131.22 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty rm -f decoys/evaluate_2.rdb sed -e s/XXX0000/T0292/ -e s/START_COL/1/ \ -e s/REAL_PDB/2javA/ \ -e s/_domain/_2/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175284076 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.81612 sec, elapsed time= 5.86751 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.8921 sec, elapsed time= 5.95813 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0292 numbered 1 through 277 Created new target T0292 from T0292.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0292_2.real.pdb looking for model 1 Skipped atom 795, because occupancy 5.0000000e-01 <= existing 0.500 in T0292_2.real.pdb Skipped atom 796, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 797, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 853, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 854, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 855, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 856, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 857, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1615, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1787, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1789, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1791, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1817, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 2049, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 2050, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 2051, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb Skipped atom 2053, because occupancy 0.500 <= existing 0.500 in T0292_2.real.pdb # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.11377 sec, elapsed time= 8.20136 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 252 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -78.1065 # GDT_score(maxd=8,maxw=2.9)= -82.1117 # GDT_score(maxd=8,maxw=3.2)= -78.7309 # GDT_score(maxd=8,maxw=3.5)= -75.2789 # GDT_score(maxd=10,maxw=3.8)= -77.4361 # GDT_score(maxd=10,maxw=4)= -75.034 # GDT_score(maxd=10,maxw=4.2)= -72.6369 # GDT_score(maxd=12,maxw=4.3)= -76.0636 # GDT_score(maxd=12,maxw=4.5)= -73.7467 # GDT_score(maxd=12,maxw=4.7)= -71.4742 # GDT_score(maxd=14,maxw=5.2)= -69.7103 # GDT_score(maxd=14,maxw=5.5)= -66.5464 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2038.000 rmsd (weighted)= 3.993 (unweighted)= 33.171 superimposing iter= 1 total_weight= 7327.128 rmsd (weighted)= 1.449 (unweighted)= 33.550 superimposing iter= 2 total_weight= 2993.930 rmsd (weighted)= 0.947 (unweighted)= 33.597 superimposing iter= 3 total_weight= 1805.712 rmsd (weighted)= 0.813 (unweighted)= 33.601 superimposing iter= 4 total_weight= 1478.340 rmsd (weighted)= 0.776 (unweighted)= 33.597 superimposing iter= 5 total_weight= 1401.813 rmsd (weighted)= 0.761 (unweighted)= 33.592 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_449755611.pdb -s /var/tmp/to_scwrl_449755611.seq -o /var/tmp/from_scwrl_449755611.pdb > /var/tmp/scwrl_449755611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_449755611.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.9586 # GDT_score(maxd=8,maxw=2.9)= -81.6881 # GDT_score(maxd=8,maxw=3.2)= -78.2672 # GDT_score(maxd=8,maxw=3.5)= -74.5579 # GDT_score(maxd=10,maxw=3.8)= -76.7811 # GDT_score(maxd=10,maxw=4)= -74.3149 # GDT_score(maxd=10,maxw=4.2)= -71.8988 # GDT_score(maxd=12,maxw=4.3)= -75.3936 # GDT_score(maxd=12,maxw=4.5)= -73.0513 # GDT_score(maxd=12,maxw=4.7)= -70.732 # GDT_score(maxd=14,maxw=5.2)= -68.8587 # GDT_score(maxd=14,maxw=5.5)= -65.5868 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1306455946.pdb -s /var/tmp/to_scwrl_1306455946.seq -o /var/tmp/from_scwrl_1306455946.pdb > /var/tmp/scwrl_1306455946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306455946.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -78.9941 # GDT_score(maxd=8,maxw=2.9)= -83.8616 # GDT_score(maxd=8,maxw=3.2)= -80.053 # GDT_score(maxd=8,maxw=3.5)= -75.9303 # GDT_score(maxd=10,maxw=3.8)= -78.0364 # GDT_score(maxd=10,maxw=4)= -75.3894 # GDT_score(maxd=10,maxw=4.2)= -72.8118 # GDT_score(maxd=12,maxw=4.3)= -76.3537 # GDT_score(maxd=12,maxw=4.5)= -73.8689 # GDT_score(maxd=12,maxw=4.7)= -71.4442 # GDT_score(maxd=14,maxw=5.2)= -69.5196 # GDT_score(maxd=14,maxw=5.5)= -66.2885 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_768012505.pdb -s /var/tmp/to_scwrl_768012505.seq -o /var/tmp/from_scwrl_768012505.pdb > /var/tmp/scwrl_768012505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768012505.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -75.1479 # GDT_score(maxd=8,maxw=2.9)= -78.27 # GDT_score(maxd=8,maxw=3.2)= -74.9988 # GDT_score(maxd=8,maxw=3.5)= -71.4863 # GDT_score(maxd=10,maxw=3.8)= -73.9333 # GDT_score(maxd=10,maxw=4)= -71.6522 # GDT_score(maxd=10,maxw=4.2)= -69.4378 # GDT_score(maxd=12,maxw=4.3)= -72.9255 # GDT_score(maxd=12,maxw=4.5)= -70.7839 # GDT_score(maxd=12,maxw=4.7)= -68.7687 # GDT_score(maxd=14,maxw=5.2)= -67.4029 # GDT_score(maxd=14,maxw=5.5)= -64.5011 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_945148418.pdb -s /var/tmp/to_scwrl_945148418.seq -o /var/tmp/from_scwrl_945148418.pdb > /var/tmp/scwrl_945148418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945148418.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.881657 # GDT_score = -67.8994 # GDT_score(maxd=8,maxw=2.9)= -71.7478 # GDT_score(maxd=8,maxw=3.2)= -68.4577 # GDT_score(maxd=8,maxw=3.5)= -65.1169 # GDT_score(maxd=10,maxw=3.8)= -67.1259 # GDT_score(maxd=10,maxw=4)= -64.9946 # GDT_score(maxd=10,maxw=4.2)= -62.9472 # GDT_score(maxd=12,maxw=4.3)= -65.9854 # GDT_score(maxd=12,maxw=4.5)= -64.011 # GDT_score(maxd=12,maxw=4.7)= -62.0882 # GDT_score(maxd=14,maxw=5.2)= -60.6856 # GDT_score(maxd=14,maxw=5.5)= -58.0616 # command:# request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_769030052.pdb -s /var/tmp/to_scwrl_769030052.seq -o /var/tmp/from_scwrl_769030052.pdb > /var/tmp/scwrl_769030052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769030052.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0292.try1-opt2.pdb looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -48.0769 # GDT_score(maxd=8,maxw=2.9)= -49.9981 # GDT_score(maxd=8,maxw=3.2)= -47.8 # GDT_score(maxd=8,maxw=3.5)= -45.453 # GDT_score(maxd=10,maxw=3.8)= -47.0545 # GDT_score(maxd=10,maxw=4)= -45.5719 # GDT_score(maxd=10,maxw=4.2)= -44.0665 # GDT_score(maxd=12,maxw=4.3)= -46.6425 # GDT_score(maxd=12,maxw=4.5)= -45.1766 # GDT_score(maxd=12,maxw=4.7)= -43.7446 # GDT_score(maxd=14,maxw=5.2)= -43.072 # GDT_score(maxd=14,maxw=5.5)= -41.1305 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2038.000 rmsd (weighted)= 14.366 (unweighted)= 48.889 superimposing iter= 1 total_weight= 4458.662 rmsd (weighted)= 6.390 (unweighted)= 46.408 superimposing iter= 2 total_weight= 4303.991 rmsd (weighted)= 3.091 (unweighted)= 45.083 superimposing iter= 3 total_weight= 3394.022 rmsd (weighted)= 1.848 (unweighted)= 44.646 superimposing iter= 4 total_weight= 2203.708 rmsd (weighted)= 1.420 (unweighted)= 44.462 superimposing iter= 5 total_weight= 1708.288 rmsd (weighted)= 1.252 (unweighted)= 44.378 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)N165.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)H166.N and (T0292)S169.N only 0.000 apart, marking (T0292)H166.N as missing WARNING: atoms too close: (T0292)H166.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)H166.CA as missing WARNING: atoms too close: (T0292)F231.C and (T0292)R232.C only 0.000 apart, marking (T0292)R232.C as missing WARNING: atoms too close: (T0292)R232.N and (T0292)R233.N only 0.000 apart, marking (T0292)R232.N as missing WARNING: atoms too close: (T0292)R232.CA and (T0292)R233.CA only 0.000 apart, marking (T0292)R232.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.911243 # GDT_score = -69.9704 # GDT_score(maxd=8,maxw=2.9)= -74.1539 # GDT_score(maxd=8,maxw=3.2)= -70.6588 # GDT_score(maxd=8,maxw=3.5)= -67.125 # GDT_score(maxd=10,maxw=3.8)= -69.2257 # GDT_score(maxd=10,maxw=4)= -66.993 # GDT_score(maxd=10,maxw=4.2)= -64.8528 # GDT_score(maxd=12,maxw=4.3)= -68.0182 # GDT_score(maxd=12,maxw=4.5)= -65.9585 # GDT_score(maxd=12,maxw=4.7)= -63.9559 # GDT_score(maxd=14,maxw=5.2)= -62.5077 # GDT_score(maxd=14,maxw=5.5)= -59.7839 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)H166.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)D167.N and (T0292)S169.N only 0.000 apart, marking (T0292)D167.N as missing WARNING: atoms too close: (T0292)D167.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)D167.CA as missing WARNING: atoms too close: (T0292)A216.C and (T0292)S218.C only 0.000 apart, marking (T0292)S218.C as missing WARNING: atoms too close: (T0292)F217.N and (T0292)Q219.N only 0.000 apart, marking (T0292)F217.N as missing WARNING: atoms too close: (T0292)F217.CA and (T0292)Q219.CA only 0.000 apart, marking (T0292)F217.CA as missing WARNING: atoms too close: (T0292)E221.C and (T0292)K225.C only 0.000 apart, marking (T0292)K225.C as missing WARNING: atoms too close: (T0292)L222.N and (T0292)I226.N only 0.000 apart, marking (T0292)L222.N as missing WARNING: atoms too close: (T0292)L222.CA and (T0292)I226.CA only 0.000 apart, marking (T0292)L222.CA as missing WARNING: atoms too close: (T0292)R232.C and (T0292)R233.C only 0.000 apart, marking (T0292)R233.C as missing WARNING: atoms too close: (T0292)R233.N and (T0292)I234.N only 0.000 apart, marking (T0292)R233.N as missing WARNING: atoms too close: (T0292)R233.CA and (T0292)I234.CA only 0.000 apart, marking (T0292)R233.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.899408 # GDT_score = -69.8225 # GDT_score(maxd=8,maxw=2.9)= -72.8541 # GDT_score(maxd=8,maxw=3.2)= -69.8203 # GDT_score(maxd=8,maxw=3.5)= -66.3117 # GDT_score(maxd=10,maxw=3.8)= -68.3653 # GDT_score(maxd=10,maxw=4)= -66.1093 # GDT_score(maxd=10,maxw=4.2)= -63.9056 # GDT_score(maxd=12,maxw=4.3)= -67.1007 # GDT_score(maxd=12,maxw=4.5)= -64.987 # GDT_score(maxd=12,maxw=4.7)= -62.9703 # GDT_score(maxd=14,maxw=5.2)= -61.4775 # GDT_score(maxd=14,maxw=5.5)= -58.7212 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0292)K26.C and (T0292)D28.C only 0.000 apart, marking (T0292)D28.C as missing WARNING: atoms too close: (T0292)S27.N and (T0292)G29.N only 0.000 apart, marking (T0292)S27.N as missing WARNING: atoms too close: (T0292)S27.CA and (T0292)G29.CA only 0.000 apart, marking (T0292)S27.CA as missing WARNING: atoms too close: (T0292)G40.C and (T0292)E44.C only 0.000 apart, marking (T0292)E44.C as missing WARNING: atoms too close: (T0292)S41.N and (T0292)A45.N only 0.000 apart, marking (T0292)S41.N as missing WARNING: atoms too close: (T0292)S41.CA and (T0292)A45.CA only 0.000 apart, marking (T0292)S41.CA as missing WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)Q104.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)Y105.N and (T0292)L106.N only 0.000 apart, marking (T0292)Y105.N as missing WARNING: atoms too close: (T0292)Y105.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)Y105.CA as missing WARNING: atoms too close: (T0292)G132.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)H133.N and (T0292)V135.N only 0.000 apart, marking (T0292)H133.N as missing WARNING: atoms too close: (T0292)H133.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)H133.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0292)Y39.C and (T0292)M42.C only 0.000 apart, marking (T0292)M42.C as missing WARNING: atoms too close: (T0292)G40.N and (T0292)T43.N only 0.000 apart, marking (T0292)G40.N as missing WARNING: atoms too close: (T0292)G40.CA and (T0292)T43.CA only 0.000 apart, marking (T0292)G40.CA as missing WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)G89.C and (T0292)G90.C only 0.000 apart, marking (T0292)G90.C as missing WARNING: atoms too close: (T0292)G90.N and (T0292)D91.N only 0.000 apart, marking (T0292)G90.N as missing WARNING: atoms too close: (T0292)G90.CA and (T0292)D91.CA only 0.000 apart, marking (T0292)G90.CA as missing WARNING: atoms too close: (T0292)R103.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)Q104.N and (T0292)L106.N only 0.000 apart, marking (T0292)Q104.N as missing WARNING: atoms too close: (T0292)Q104.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)Q104.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)I163.C and (T0292)H166.C only 0.000 apart, marking (T0292)H166.C as missing WARNING: atoms too close: (T0292)L164.N and (T0292)D167.N only 0.000 apart, marking (T0292)L164.N as missing WARNING: atoms too close: (T0292)L164.CA and (T0292)D167.CA only 0.000 apart, marking (T0292)L164.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0292.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0292)I72.C and (T0292)D74.C only 0.000 apart, marking (T0292)D74.C as missing WARNING: atoms too close: (T0292)I73.N and (T0292)R75.N only 0.000 apart, marking (T0292)I73.N as missing WARNING: atoms too close: (T0292)I73.CA and (T0292)R75.CA only 0.000 apart, marking (T0292)I73.CA as missing WARNING: atoms too close: (T0292)K101.C and (T0292)Y105.C only 0.000 apart, marking (T0292)Y105.C as missing WARNING: atoms too close: (T0292)E102.N and (T0292)L106.N only 0.000 apart, marking (T0292)E102.N as missing WARNING: atoms too close: (T0292)E102.CA and (T0292)L106.CA only 0.000 apart, marking (T0292)E102.CA as missing WARNING: atoms too close: (T0292)S129.C and (T0292)T134.C only 0.000 apart, marking (T0292)T134.C as missing WARNING: atoms too close: (T0292)D130.N and (T0292)V135.N only 0.000 apart, marking (T0292)D130.N as missing WARNING: atoms too close: (T0292)D130.CA and (T0292)V135.CA only 0.000 apart, marking (T0292)D130.CA as missing WARNING: atoms too close: (T0292)N165.C and (T0292)T168.C only 0.000 apart, marking (T0292)T168.C as missing WARNING: atoms too close: (T0292)H166.N and (T0292)S169.N only 0.000 apart, marking (T0292)H166.N as missing WARNING: atoms too close: (T0292)H166.CA and (T0292)S169.CA only 0.000 apart, marking (T0292)H166.CA as missing WARNING: atoms too close: (T0292)F231.C and (T0292)R232.C only 0.000 apart, marking (T0292)R232.C as missing WARNING: atoms too close: (T0292)R232.N and (T0292)R233.N only 0.000 apart, marking (T0292)R232.N as missing WARNING: atoms too close: (T0292)R232.CA and (T0292)R233.CA only 0.000 apart, marking (T0292)R232.CA as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0292.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0292.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try5-server.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1799384829.pdb -s /var/tmp/to_scwrl_1799384829.seq -o /var/tmp/from_scwrl_1799384829.pdb > /var/tmp/scwrl_1799384829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1799384829.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_956941784.pdb -s /var/tmp/to_scwrl_956941784.seq -o /var/tmp/from_scwrl_956941784.pdb > /var/tmp/scwrl_956941784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_956941784.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_54127915.pdb -s /var/tmp/to_scwrl_54127915.seq -o /var/tmp/from_scwrl_54127915.pdb > /var/tmp/scwrl_54127915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54127915.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_628352990.pdb -s /var/tmp/to_scwrl_628352990.seq -o /var/tmp/from_scwrl_628352990.pdb > /var/tmp/scwrl_628352990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628352990.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_923969917.pdb -s /var/tmp/to_scwrl_923969917.seq -o /var/tmp/from_scwrl_923969917.pdb > /var/tmp/scwrl_923969917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923969917.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1250777484.pdb -s /var/tmp/to_scwrl_1250777484.seq -o /var/tmp/from_scwrl_1250777484.pdb > /var/tmp/scwrl_1250777484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250777484.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_762711702.pdb -s /var/tmp/to_scwrl_762711702.seq -o /var/tmp/from_scwrl_762711702.pdb > /var/tmp/scwrl_762711702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762711702.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1349097968.pdb -s /var/tmp/to_scwrl_1349097968.seq -o /var/tmp/from_scwrl_1349097968.pdb > /var/tmp/scwrl_1349097968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349097968.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1356486375.pdb -s /var/tmp/to_scwrl_1356486375.seq -o /var/tmp/from_scwrl_1356486375.pdb > /var/tmp/scwrl_1356486375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356486375.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_913288126.pdb -s /var/tmp/to_scwrl_913288126.seq -o /var/tmp/from_scwrl_913288126.pdb > /var/tmp/scwrl_913288126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_913288126.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1602006359.pdb -s /var/tmp/to_scwrl_1602006359.seq -o /var/tmp/from_scwrl_1602006359.pdb > /var/tmp/scwrl_1602006359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602006359.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_228958445.pdb -s /var/tmp/to_scwrl_228958445.seq -o /var/tmp/from_scwrl_228958445.pdb > /var/tmp/scwrl_228958445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_228958445.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_166770067.pdb -s /var/tmp/to_scwrl_166770067.seq -o /var/tmp/from_scwrl_166770067.pdb > /var/tmp/scwrl_166770067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_166770067.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1351921739.pdb -s /var/tmp/to_scwrl_1351921739.seq -o /var/tmp/from_scwrl_1351921739.pdb > /var/tmp/scwrl_1351921739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351921739.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_654345627.pdb -s /var/tmp/to_scwrl_654345627.seq -o /var/tmp/from_scwrl_654345627.pdb > /var/tmp/scwrl_654345627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_654345627.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2004724333.pdb -s /var/tmp/to_scwrl_2004724333.seq -o /var/tmp/from_scwrl_2004724333.pdb > /var/tmp/scwrl_2004724333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2004724333.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_710362818.pdb -s /var/tmp/to_scwrl_710362818.seq -o /var/tmp/from_scwrl_710362818.pdb > /var/tmp/scwrl_710362818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_710362818.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2007889246.pdb -s /var/tmp/to_scwrl_2007889246.seq -o /var/tmp/from_scwrl_2007889246.pdb > /var/tmp/scwrl_2007889246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007889246.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_897394238.pdb -s /var/tmp/to_scwrl_897394238.seq -o /var/tmp/from_scwrl_897394238.pdb > /var/tmp/scwrl_897394238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897394238.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1811300093.pdb -s /var/tmp/to_scwrl_1811300093.seq -o /var/tmp/from_scwrl_1811300093.pdb > /var/tmp/scwrl_1811300093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811300093.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_829920458.pdb -s /var/tmp/to_scwrl_829920458.seq -o /var/tmp/from_scwrl_829920458.pdb > /var/tmp/scwrl_829920458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_829920458.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_265017439.pdb -s /var/tmp/to_scwrl_265017439.seq -o /var/tmp/from_scwrl_265017439.pdb > /var/tmp/scwrl_265017439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265017439.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_870004489.pdb -s /var/tmp/to_scwrl_870004489.seq -o /var/tmp/from_scwrl_870004489.pdb > /var/tmp/scwrl_870004489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_870004489.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1785695266.pdb -s /var/tmp/to_scwrl_1785695266.seq -o /var/tmp/from_scwrl_1785695266.pdb > /var/tmp/scwrl_1785695266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785695266.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_71201749.pdb -s /var/tmp/to_scwrl_71201749.seq -o /var/tmp/from_scwrl_71201749.pdb > /var/tmp/scwrl_71201749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71201749.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1724693298.pdb -s /var/tmp/to_scwrl_1724693298.seq -o /var/tmp/from_scwrl_1724693298.pdb > /var/tmp/scwrl_1724693298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724693298.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_87967230.pdb -s /var/tmp/to_scwrl_87967230.seq -o /var/tmp/from_scwrl_87967230.pdb > /var/tmp/scwrl_87967230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87967230.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1377657695.pdb -s /var/tmp/to_scwrl_1377657695.seq -o /var/tmp/from_scwrl_1377657695.pdb > /var/tmp/scwrl_1377657695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377657695.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_345222156.pdb -s /var/tmp/to_scwrl_345222156.seq -o /var/tmp/from_scwrl_345222156.pdb > /var/tmp/scwrl_345222156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345222156.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1033115648.pdb -s /var/tmp/to_scwrl_1033115648.seq -o /var/tmp/from_scwrl_1033115648.pdb > /var/tmp/scwrl_1033115648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033115648.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2146687748.pdb -s /var/tmp/to_scwrl_2146687748.seq -o /var/tmp/from_scwrl_2146687748.pdb > /var/tmp/scwrl_2146687748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146687748.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2144606985.pdb -s /var/tmp/to_scwrl_2144606985.seq -o /var/tmp/from_scwrl_2144606985.pdb > /var/tmp/scwrl_2144606985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2144606985.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1990057432.pdb -s /var/tmp/to_scwrl_1990057432.seq -o /var/tmp/from_scwrl_1990057432.pdb > /var/tmp/scwrl_1990057432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990057432.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_53332016.pdb -s /var/tmp/to_scwrl_53332016.seq -o /var/tmp/from_scwrl_53332016.pdb > /var/tmp/scwrl_53332016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53332016.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_625476329.pdb -s /var/tmp/to_scwrl_625476329.seq -o /var/tmp/from_scwrl_625476329.pdb > /var/tmp/scwrl_625476329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_625476329.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_766543702.pdb -s /var/tmp/to_scwrl_766543702.seq -o /var/tmp/from_scwrl_766543702.pdb > /var/tmp/scwrl_766543702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766543702.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1304109500.pdb -s /var/tmp/to_scwrl_1304109500.seq -o /var/tmp/from_scwrl_1304109500.pdb > /var/tmp/scwrl_1304109500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1304109500.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1388188030.pdb -s /var/tmp/to_scwrl_1388188030.seq -o /var/tmp/from_scwrl_1388188030.pdb > /var/tmp/scwrl_1388188030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1388188030.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2115641671.pdb -s /var/tmp/to_scwrl_2115641671.seq -o /var/tmp/from_scwrl_2115641671.pdb > /var/tmp/scwrl_2115641671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2115641671.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_513112230.pdb -s /var/tmp/to_scwrl_513112230.seq -o /var/tmp/from_scwrl_513112230.pdb > /var/tmp/scwrl_513112230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513112230.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)A223.C and (T0292)G224.N only 0.000 apart, marking (T0292)G224.N as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.CA only 0.000 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.CA only 0.000 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.O only 0.000 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.O and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.C only 0.000 apart, marking (T0292)G224.C as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_153992509.pdb -s /var/tmp/to_scwrl_153992509.seq -o /var/tmp/from_scwrl_153992509.pdb > /var/tmp/scwrl_153992509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153992509.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1570164383.pdb -s /var/tmp/to_scwrl_1570164383.seq -o /var/tmp/from_scwrl_1570164383.pdb > /var/tmp/scwrl_1570164383.log Error: Couldn't open file /var/tmp/from_scwrl_1570164383.pdb or /var/tmp/from_scwrl_1570164383.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1570164383_b.pdb or decoys//var/tmp/from_scwrl_1570164383_b.pdb.gz for input Trying /var/tmp/from_scwrl_1570164383_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1570164383_b.pdb or /var/tmp/from_scwrl_1570164383_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1570164383_a.pdb or decoys//var/tmp/from_scwrl_1570164383_a.pdb.gz for input Trying /var/tmp/from_scwrl_1570164383_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1570164383_a.pdb or /var/tmp/from_scwrl_1570164383_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1570164383.pdb or /var/tmp/from_scwrl_1570164383_b.pdb or /var/tmp/from_scwrl_1570164383_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_742070675.pdb -s /var/tmp/to_scwrl_742070675.seq -o /var/tmp/from_scwrl_742070675.pdb > /var/tmp/scwrl_742070675.log Error: Couldn't open file /var/tmp/from_scwrl_742070675.pdb or /var/tmp/from_scwrl_742070675.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_742070675_b.pdb or decoys//var/tmp/from_scwrl_742070675_b.pdb.gz for input Trying /var/tmp/from_scwrl_742070675_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_742070675_b.pdb or /var/tmp/from_scwrl_742070675_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_742070675_a.pdb or decoys//var/tmp/from_scwrl_742070675_a.pdb.gz for input Trying /var/tmp/from_scwrl_742070675_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_742070675_a.pdb or /var/tmp/from_scwrl_742070675_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_742070675.pdb or /var/tmp/from_scwrl_742070675_b.pdb or /var/tmp/from_scwrl_742070675_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_320762577.pdb -s /var/tmp/to_scwrl_320762577.seq -o /var/tmp/from_scwrl_320762577.pdb > /var/tmp/scwrl_320762577.log Error: Couldn't open file /var/tmp/from_scwrl_320762577.pdb or /var/tmp/from_scwrl_320762577.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_320762577_b.pdb or decoys//var/tmp/from_scwrl_320762577_b.pdb.gz for input Trying /var/tmp/from_scwrl_320762577_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_320762577_b.pdb or /var/tmp/from_scwrl_320762577_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_320762577_a.pdb or decoys//var/tmp/from_scwrl_320762577_a.pdb.gz for input Trying /var/tmp/from_scwrl_320762577_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_320762577_a.pdb or /var/tmp/from_scwrl_320762577_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_320762577.pdb or /var/tmp/from_scwrl_320762577_b.pdb or /var/tmp/from_scwrl_320762577_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_774602476.pdb -s /var/tmp/to_scwrl_774602476.seq -o /var/tmp/from_scwrl_774602476.pdb > /var/tmp/scwrl_774602476.log Error: Couldn't open file /var/tmp/from_scwrl_774602476.pdb or /var/tmp/from_scwrl_774602476.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_774602476_b.pdb or decoys//var/tmp/from_scwrl_774602476_b.pdb.gz for input Trying /var/tmp/from_scwrl_774602476_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_774602476_b.pdb or /var/tmp/from_scwrl_774602476_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_774602476_a.pdb or decoys//var/tmp/from_scwrl_774602476_a.pdb.gz for input Trying /var/tmp/from_scwrl_774602476_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_774602476_a.pdb or /var/tmp/from_scwrl_774602476_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_774602476.pdb or /var/tmp/from_scwrl_774602476_b.pdb or /var/tmp/from_scwrl_774602476_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1396416302.pdb -s /var/tmp/to_scwrl_1396416302.seq -o /var/tmp/from_scwrl_1396416302.pdb > /var/tmp/scwrl_1396416302.log Error: Couldn't open file /var/tmp/from_scwrl_1396416302.pdb or /var/tmp/from_scwrl_1396416302.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1396416302_b.pdb or decoys//var/tmp/from_scwrl_1396416302_b.pdb.gz for input Trying /var/tmp/from_scwrl_1396416302_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1396416302_b.pdb or /var/tmp/from_scwrl_1396416302_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1396416302_a.pdb or decoys//var/tmp/from_scwrl_1396416302_a.pdb.gz for input Trying /var/tmp/from_scwrl_1396416302_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1396416302_a.pdb or /var/tmp/from_scwrl_1396416302_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1396416302.pdb or /var/tmp/from_scwrl_1396416302_b.pdb or /var/tmp/from_scwrl_1396416302_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_178003263.pdb -s /var/tmp/to_scwrl_178003263.seq -o /var/tmp/from_scwrl_178003263.pdb > /var/tmp/scwrl_178003263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178003263.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1484965294.pdb -s /var/tmp/to_scwrl_1484965294.seq -o /var/tmp/from_scwrl_1484965294.pdb > /var/tmp/scwrl_1484965294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484965294.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1256821901.pdb -s /var/tmp/to_scwrl_1256821901.seq -o /var/tmp/from_scwrl_1256821901.pdb > /var/tmp/scwrl_1256821901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256821901.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1075397500.pdb -s /var/tmp/to_scwrl_1075397500.seq -o /var/tmp/from_scwrl_1075397500.pdb > /var/tmp/scwrl_1075397500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075397500.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1148781740.pdb -s /var/tmp/to_scwrl_1148781740.seq -o /var/tmp/from_scwrl_1148781740.pdb > /var/tmp/scwrl_1148781740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1148781740.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2086742359.pdb -s /var/tmp/to_scwrl_2086742359.seq -o /var/tmp/from_scwrl_2086742359.pdb > /var/tmp/scwrl_2086742359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2086742359.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1340414939.pdb -s /var/tmp/to_scwrl_1340414939.seq -o /var/tmp/from_scwrl_1340414939.pdb > /var/tmp/scwrl_1340414939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340414939.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2018786229.pdb -s /var/tmp/to_scwrl_2018786229.seq -o /var/tmp/from_scwrl_2018786229.pdb > /var/tmp/scwrl_2018786229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2018786229.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1724953978.pdb -s /var/tmp/to_scwrl_1724953978.seq -o /var/tmp/from_scwrl_1724953978.pdb > /var/tmp/scwrl_1724953978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724953978.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1411616688.pdb -s /var/tmp/to_scwrl_1411616688.seq -o /var/tmp/from_scwrl_1411616688.pdb > /var/tmp/scwrl_1411616688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1411616688.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1595995881.pdb -s /var/tmp/to_scwrl_1595995881.seq -o /var/tmp/from_scwrl_1595995881.pdb > /var/tmp/scwrl_1595995881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595995881.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1812921208.pdb -s /var/tmp/to_scwrl_1812921208.seq -o /var/tmp/from_scwrl_1812921208.pdb > /var/tmp/scwrl_1812921208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812921208.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_641790737.pdb -s /var/tmp/to_scwrl_641790737.seq -o /var/tmp/from_scwrl_641790737.pdb > /var/tmp/scwrl_641790737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641790737.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1941218037.pdb -s /var/tmp/to_scwrl_1941218037.seq -o /var/tmp/from_scwrl_1941218037.pdb > /var/tmp/scwrl_1941218037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941218037.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_698553210.pdb -s /var/tmp/to_scwrl_698553210.seq -o /var/tmp/from_scwrl_698553210.pdb > /var/tmp/scwrl_698553210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698553210.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_640994838.pdb -s /var/tmp/to_scwrl_640994838.seq -o /var/tmp/from_scwrl_640994838.pdb > /var/tmp/scwrl_640994838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_640994838.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1938341376.pdb -s /var/tmp/to_scwrl_1938341376.seq -o /var/tmp/from_scwrl_1938341376.pdb > /var/tmp/scwrl_1938341376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938341376.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_541126995.pdb -s /var/tmp/to_scwrl_541126995.seq -o /var/tmp/from_scwrl_541126995.pdb > /var/tmp/scwrl_541126995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541126995.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_694326855.pdb -s /var/tmp/to_scwrl_694326855.seq -o /var/tmp/from_scwrl_694326855.pdb > /var/tmp/scwrl_694326855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694326855.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_416334058.pdb -s /var/tmp/to_scwrl_416334058.seq -o /var/tmp/from_scwrl_416334058.pdb > /var/tmp/scwrl_416334058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416334058.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1307670696.pdb -s /var/tmp/to_scwrl_1307670696.seq -o /var/tmp/from_scwrl_1307670696.pdb > /var/tmp/scwrl_1307670696.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307670696.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1998436355.pdb -s /var/tmp/to_scwrl_1998436355.seq -o /var/tmp/from_scwrl_1998436355.pdb > /var/tmp/scwrl_1998436355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1998436355.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1804522088.pdb -s /var/tmp/to_scwrl_1804522088.seq -o /var/tmp/from_scwrl_1804522088.pdb > /var/tmp/scwrl_1804522088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1804522088.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1275828720.pdb -s /var/tmp/to_scwrl_1275828720.seq -o /var/tmp/from_scwrl_1275828720.pdb > /var/tmp/scwrl_1275828720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275828720.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_364064938.pdb -s /var/tmp/to_scwrl_364064938.seq -o /var/tmp/from_scwrl_364064938.pdb > /var/tmp/scwrl_364064938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364064938.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1958514597.pdb -s /var/tmp/to_scwrl_1958514597.seq -o /var/tmp/from_scwrl_1958514597.pdb > /var/tmp/scwrl_1958514597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1958514597.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_698509458.pdb -s /var/tmp/to_scwrl_698509458.seq -o /var/tmp/from_scwrl_698509458.pdb > /var/tmp/scwrl_698509458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698509458.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1106135613.pdb -s /var/tmp/to_scwrl_1106135613.seq -o /var/tmp/from_scwrl_1106135613.pdb > /var/tmp/scwrl_1106135613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1106135613.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_131793527.pdb -s /var/tmp/to_scwrl_131793527.seq -o /var/tmp/from_scwrl_131793527.pdb > /var/tmp/scwrl_131793527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131793527.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1473111933.pdb -s /var/tmp/to_scwrl_1473111933.seq -o /var/tmp/from_scwrl_1473111933.pdb > /var/tmp/scwrl_1473111933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473111933.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_355068269.pdb -s /var/tmp/to_scwrl_355068269.seq -o /var/tmp/from_scwrl_355068269.pdb > /var/tmp/scwrl_355068269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355068269.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_309796790.pdb -s /var/tmp/to_scwrl_309796790.seq -o /var/tmp/from_scwrl_309796790.pdb > /var/tmp/scwrl_309796790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_309796790.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_810593581.pdb -s /var/tmp/to_scwrl_810593581.seq -o /var/tmp/from_scwrl_810593581.pdb > /var/tmp/scwrl_810593581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_810593581.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1611890170.pdb -s /var/tmp/to_scwrl_1611890170.seq -o /var/tmp/from_scwrl_1611890170.pdb > /var/tmp/scwrl_1611890170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1611890170.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1385194290.pdb -s /var/tmp/to_scwrl_1385194290.seq -o /var/tmp/from_scwrl_1385194290.pdb > /var/tmp/scwrl_1385194290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1385194290.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1959375322.pdb -s /var/tmp/to_scwrl_1959375322.seq -o /var/tmp/from_scwrl_1959375322.pdb > /var/tmp/scwrl_1959375322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1959375322.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1551148883.pdb -s /var/tmp/to_scwrl_1551148883.seq -o /var/tmp/from_scwrl_1551148883.pdb > /var/tmp/scwrl_1551148883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551148883.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_578125583.pdb -s /var/tmp/to_scwrl_578125583.seq -o /var/tmp/from_scwrl_578125583.pdb > /var/tmp/scwrl_578125583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578125583.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1830677904.pdb -s /var/tmp/to_scwrl_1830677904.seq -o /var/tmp/from_scwrl_1830677904.pdb > /var/tmp/scwrl_1830677904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1830677904.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1128619214.pdb -s /var/tmp/to_scwrl_1128619214.seq -o /var/tmp/from_scwrl_1128619214.pdb > /var/tmp/scwrl_1128619214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128619214.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1989742271.pdb -s /var/tmp/to_scwrl_1989742271.seq -o /var/tmp/from_scwrl_1989742271.pdb > /var/tmp/scwrl_1989742271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1989742271.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1279190138.pdb -s /var/tmp/to_scwrl_1279190138.seq -o /var/tmp/from_scwrl_1279190138.pdb > /var/tmp/scwrl_1279190138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279190138.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_794056777.pdb -s /var/tmp/to_scwrl_794056777.seq -o /var/tmp/from_scwrl_794056777.pdb > /var/tmp/scwrl_794056777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794056777.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_484049362.pdb -s /var/tmp/to_scwrl_484049362.seq -o /var/tmp/from_scwrl_484049362.pdb > /var/tmp/scwrl_484049362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484049362.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1072924530.pdb -s /var/tmp/to_scwrl_1072924530.seq -o /var/tmp/from_scwrl_1072924530.pdb > /var/tmp/scwrl_1072924530.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072924530.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1492609986.pdb -s /var/tmp/to_scwrl_1492609986.seq -o /var/tmp/from_scwrl_1492609986.pdb > /var/tmp/scwrl_1492609986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492609986.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1125044199.pdb -s /var/tmp/to_scwrl_1125044199.seq -o /var/tmp/from_scwrl_1125044199.pdb > /var/tmp/scwrl_1125044199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1125044199.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_863782259.pdb -s /var/tmp/to_scwrl_863782259.seq -o /var/tmp/from_scwrl_863782259.pdb > /var/tmp/scwrl_863782259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863782259.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2033736981.pdb -s /var/tmp/to_scwrl_2033736981.seq -o /var/tmp/from_scwrl_2033736981.pdb > /var/tmp/scwrl_2033736981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2033736981.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1819371054.pdb -s /var/tmp/to_scwrl_1819371054.seq -o /var/tmp/from_scwrl_1819371054.pdb > /var/tmp/scwrl_1819371054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819371054.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1280116316.pdb -s /var/tmp/to_scwrl_1280116316.seq -o /var/tmp/from_scwrl_1280116316.pdb > /var/tmp/scwrl_1280116316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280116316.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1193924030.pdb -s /var/tmp/to_scwrl_1193924030.seq -o /var/tmp/from_scwrl_1193924030.pdb > /var/tmp/scwrl_1193924030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193924030.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1670323763.pdb -s /var/tmp/to_scwrl_1670323763.seq -o /var/tmp/from_scwrl_1670323763.pdb > /var/tmp/scwrl_1670323763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1670323763.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_937154758.pdb -s /var/tmp/to_scwrl_937154758.seq -o /var/tmp/from_scwrl_937154758.pdb > /var/tmp/scwrl_937154758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_937154758.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_322269105.pdb -s /var/tmp/to_scwrl_322269105.seq -o /var/tmp/from_scwrl_322269105.pdb > /var/tmp/scwrl_322269105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322269105.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2034388701.pdb -s /var/tmp/to_scwrl_2034388701.seq -o /var/tmp/from_scwrl_2034388701.pdb > /var/tmp/scwrl_2034388701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034388701.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_748185708.pdb -s /var/tmp/to_scwrl_748185708.seq -o /var/tmp/from_scwrl_748185708.pdb > /var/tmp/scwrl_748185708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_748185708.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1020778563.pdb -s /var/tmp/to_scwrl_1020778563.seq -o /var/tmp/from_scwrl_1020778563.pdb > /var/tmp/scwrl_1020778563.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020778563.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_993040668.pdb -s /var/tmp/to_scwrl_993040668.seq -o /var/tmp/from_scwrl_993040668.pdb > /var/tmp/scwrl_993040668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_993040668.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_879979236.pdb -s /var/tmp/to_scwrl_879979236.seq -o /var/tmp/from_scwrl_879979236.pdb > /var/tmp/scwrl_879979236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_879979236.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_346406849.pdb -s /var/tmp/to_scwrl_346406849.seq -o /var/tmp/from_scwrl_346406849.pdb > /var/tmp/scwrl_346406849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346406849.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1348108936.pdb -s /var/tmp/to_scwrl_1348108936.seq -o /var/tmp/from_scwrl_1348108936.pdb > /var/tmp/scwrl_1348108936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1348108936.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1189776025.pdb -s /var/tmp/to_scwrl_1189776025.seq -o /var/tmp/from_scwrl_1189776025.pdb > /var/tmp/scwrl_1189776025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189776025.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1157000430.pdb -s /var/tmp/to_scwrl_1157000430.seq -o /var/tmp/from_scwrl_1157000430.pdb > /var/tmp/scwrl_1157000430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1157000430.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_812515461.pdb -s /var/tmp/to_scwrl_812515461.seq -o /var/tmp/from_scwrl_812515461.pdb > /var/tmp/scwrl_812515461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_812515461.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_427486670.pdb -s /var/tmp/to_scwrl_427486670.seq -o /var/tmp/from_scwrl_427486670.pdb > /var/tmp/scwrl_427486670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_427486670.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_968892106.pdb -s /var/tmp/to_scwrl_968892106.seq -o /var/tmp/from_scwrl_968892106.pdb > /var/tmp/scwrl_968892106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968892106.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_216180697.pdb -s /var/tmp/to_scwrl_216180697.seq -o /var/tmp/from_scwrl_216180697.pdb > /var/tmp/scwrl_216180697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_216180697.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1005612253.pdb -s /var/tmp/to_scwrl_1005612253.seq -o /var/tmp/from_scwrl_1005612253.pdb > /var/tmp/scwrl_1005612253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005612253.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_652086363.pdb -s /var/tmp/to_scwrl_652086363.seq -o /var/tmp/from_scwrl_652086363.pdb > /var/tmp/scwrl_652086363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_652086363.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1344799911.pdb -s /var/tmp/to_scwrl_1344799911.seq -o /var/tmp/from_scwrl_1344799911.pdb > /var/tmp/scwrl_1344799911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1344799911.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_847870878.pdb -s /var/tmp/to_scwrl_847870878.seq -o /var/tmp/from_scwrl_847870878.pdb > /var/tmp/scwrl_847870878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847870878.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1931276502.pdb -s /var/tmp/to_scwrl_1931276502.seq -o /var/tmp/from_scwrl_1931276502.pdb > /var/tmp/scwrl_1931276502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931276502.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2138856688.pdb -s /var/tmp/to_scwrl_2138856688.seq -o /var/tmp/from_scwrl_2138856688.pdb > /var/tmp/scwrl_2138856688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2138856688.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1331920239.pdb -s /var/tmp/to_scwrl_1331920239.seq -o /var/tmp/from_scwrl_1331920239.pdb > /var/tmp/scwrl_1331920239.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331920239.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_856717385.pdb -s /var/tmp/to_scwrl_856717385.seq -o /var/tmp/from_scwrl_856717385.pdb > /var/tmp/scwrl_856717385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_856717385.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1483983027.pdb -s /var/tmp/to_scwrl_1483983027.seq -o /var/tmp/from_scwrl_1483983027.pdb > /var/tmp/scwrl_1483983027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1483983027.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_309480792.pdb -s /var/tmp/to_scwrl_309480792.seq -o /var/tmp/from_scwrl_309480792.pdb > /var/tmp/scwrl_309480792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_309480792.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1720499643.pdb -s /var/tmp/to_scwrl_1720499643.seq -o /var/tmp/from_scwrl_1720499643.pdb > /var/tmp/scwrl_1720499643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720499643.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1370236361.pdb -s /var/tmp/to_scwrl_1370236361.seq -o /var/tmp/from_scwrl_1370236361.pdb > /var/tmp/scwrl_1370236361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1370236361.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2128851847.pdb -s /var/tmp/to_scwrl_2128851847.seq -o /var/tmp/from_scwrl_2128851847.pdb > /var/tmp/scwrl_2128851847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2128851847.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_853132313.pdb -s /var/tmp/to_scwrl_853132313.seq -o /var/tmp/from_scwrl_853132313.pdb > /var/tmp/scwrl_853132313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_853132313.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_416676746.pdb -s /var/tmp/to_scwrl_416676746.seq -o /var/tmp/from_scwrl_416676746.pdb > /var/tmp/scwrl_416676746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416676746.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1651691963.pdb -s /var/tmp/to_scwrl_1651691963.seq -o /var/tmp/from_scwrl_1651691963.pdb > /var/tmp/scwrl_1651691963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1651691963.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1790287070.pdb -s /var/tmp/to_scwrl_1790287070.seq -o /var/tmp/from_scwrl_1790287070.pdb > /var/tmp/scwrl_1790287070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790287070.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_738945851.pdb -s /var/tmp/to_scwrl_738945851.seq -o /var/tmp/from_scwrl_738945851.pdb > /var/tmp/scwrl_738945851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738945851.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1538597017.pdb -s /var/tmp/to_scwrl_1538597017.seq -o /var/tmp/from_scwrl_1538597017.pdb > /var/tmp/scwrl_1538597017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1538597017.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_390989131.pdb -s /var/tmp/to_scwrl_390989131.seq -o /var/tmp/from_scwrl_390989131.pdb > /var/tmp/scwrl_390989131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390989131.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1759724413.pdb -s /var/tmp/to_scwrl_1759724413.seq -o /var/tmp/from_scwrl_1759724413.pdb > /var/tmp/scwrl_1759724413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759724413.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_384154039.pdb -s /var/tmp/to_scwrl_384154039.seq -o /var/tmp/from_scwrl_384154039.pdb > /var/tmp/scwrl_384154039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_384154039.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1270968366.pdb -s /var/tmp/to_scwrl_1270968366.seq -o /var/tmp/from_scwrl_1270968366.pdb > /var/tmp/scwrl_1270968366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1270968366.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2106131262.pdb -s /var/tmp/to_scwrl_2106131262.seq -o /var/tmp/from_scwrl_2106131262.pdb > /var/tmp/scwrl_2106131262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2106131262.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1732262975.pdb -s /var/tmp/to_scwrl_1732262975.seq -o /var/tmp/from_scwrl_1732262975.pdb > /var/tmp/scwrl_1732262975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732262975.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_313260746.pdb -s /var/tmp/to_scwrl_313260746.seq -o /var/tmp/from_scwrl_313260746.pdb > /var/tmp/scwrl_313260746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_313260746.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1115648045.pdb -s /var/tmp/to_scwrl_1115648045.seq -o /var/tmp/from_scwrl_1115648045.pdb > /var/tmp/scwrl_1115648045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1115648045.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_397294789.pdb -s /var/tmp/to_scwrl_397294789.seq -o /var/tmp/from_scwrl_397294789.pdb > /var/tmp/scwrl_397294789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_397294789.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_740747416.pdb -s /var/tmp/to_scwrl_740747416.seq -o /var/tmp/from_scwrl_740747416.pdb > /var/tmp/scwrl_740747416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_740747416.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2084540151.pdb -s /var/tmp/to_scwrl_2084540151.seq -o /var/tmp/from_scwrl_2084540151.pdb > /var/tmp/scwrl_2084540151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2084540151.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_613475486.pdb -s /var/tmp/to_scwrl_613475486.seq -o /var/tmp/from_scwrl_613475486.pdb > /var/tmp/scwrl_613475486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613475486.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1746359668.pdb -s /var/tmp/to_scwrl_1746359668.seq -o /var/tmp/from_scwrl_1746359668.pdb > /var/tmp/scwrl_1746359668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1746359668.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_589142868.pdb -s /var/tmp/to_scwrl_589142868.seq -o /var/tmp/from_scwrl_589142868.pdb > /var/tmp/scwrl_589142868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_589142868.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1958275398.pdb -s /var/tmp/to_scwrl_1958275398.seq -o /var/tmp/from_scwrl_1958275398.pdb > /var/tmp/scwrl_1958275398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1958275398.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_446746899.pdb -s /var/tmp/to_scwrl_446746899.seq -o /var/tmp/from_scwrl_446746899.pdb > /var/tmp/scwrl_446746899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_446746899.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_372935723.pdb -s /var/tmp/to_scwrl_372935723.seq -o /var/tmp/from_scwrl_372935723.pdb > /var/tmp/scwrl_372935723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_372935723.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1949648439.pdb -s /var/tmp/to_scwrl_1949648439.seq -o /var/tmp/from_scwrl_1949648439.pdb > /var/tmp/scwrl_1949648439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1949648439.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1778667138.pdb -s /var/tmp/to_scwrl_1778667138.seq -o /var/tmp/from_scwrl_1778667138.pdb > /var/tmp/scwrl_1778667138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1778667138.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1229653107.pdb -s /var/tmp/to_scwrl_1229653107.seq -o /var/tmp/from_scwrl_1229653107.pdb > /var/tmp/scwrl_1229653107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229653107.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1286147820.pdb -s /var/tmp/to_scwrl_1286147820.seq -o /var/tmp/from_scwrl_1286147820.pdb > /var/tmp/scwrl_1286147820.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1286147820.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2088147931.pdb -s /var/tmp/to_scwrl_2088147931.seq -o /var/tmp/from_scwrl_2088147931.pdb > /var/tmp/scwrl_2088147931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088147931.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_802669104.pdb -s /var/tmp/to_scwrl_802669104.seq -o /var/tmp/from_scwrl_802669104.pdb > /var/tmp/scwrl_802669104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_802669104.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_508900535.pdb -s /var/tmp/to_scwrl_508900535.seq -o /var/tmp/from_scwrl_508900535.pdb > /var/tmp/scwrl_508900535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508900535.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2069516131.pdb -s /var/tmp/to_scwrl_2069516131.seq -o /var/tmp/from_scwrl_2069516131.pdb > /var/tmp/scwrl_2069516131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2069516131.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1655801416.pdb -s /var/tmp/to_scwrl_1655801416.seq -o /var/tmp/from_scwrl_1655801416.pdb > /var/tmp/scwrl_1655801416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655801416.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_925577281.pdb -s /var/tmp/to_scwrl_925577281.seq -o /var/tmp/from_scwrl_925577281.pdb > /var/tmp/scwrl_925577281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925577281.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1573724447.pdb -s /var/tmp/to_scwrl_1573724447.seq -o /var/tmp/from_scwrl_1573724447.pdb > /var/tmp/scwrl_1573724447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1573724447.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1298604839.pdb -s /var/tmp/to_scwrl_1298604839.seq -o /var/tmp/from_scwrl_1298604839.pdb > /var/tmp/scwrl_1298604839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298604839.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1664523131.pdb -s /var/tmp/to_scwrl_1664523131.seq -o /var/tmp/from_scwrl_1664523131.pdb > /var/tmp/scwrl_1664523131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664523131.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_964837818.pdb -s /var/tmp/to_scwrl_964837818.seq -o /var/tmp/from_scwrl_964837818.pdb > /var/tmp/scwrl_964837818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_964837818.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1689593970.pdb -s /var/tmp/to_scwrl_1689593970.seq -o /var/tmp/from_scwrl_1689593970.pdb > /var/tmp/scwrl_1689593970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689593970.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1276763897.pdb -s /var/tmp/to_scwrl_1276763897.seq -o /var/tmp/from_scwrl_1276763897.pdb > /var/tmp/scwrl_1276763897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276763897.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1348991856.pdb -s /var/tmp/to_scwrl_1348991856.seq -o /var/tmp/from_scwrl_1348991856.pdb > /var/tmp/scwrl_1348991856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1348991856.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_813078691.pdb -s /var/tmp/to_scwrl_813078691.seq -o /var/tmp/from_scwrl_813078691.pdb > /var/tmp/scwrl_813078691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_813078691.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1235411513.pdb -s /var/tmp/to_scwrl_1235411513.seq -o /var/tmp/from_scwrl_1235411513.pdb > /var/tmp/scwrl_1235411513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1235411513.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_933771186.pdb -s /var/tmp/to_scwrl_933771186.seq -o /var/tmp/from_scwrl_933771186.pdb > /var/tmp/scwrl_933771186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933771186.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1126339436.pdb -s /var/tmp/to_scwrl_1126339436.seq -o /var/tmp/from_scwrl_1126339436.pdb > /var/tmp/scwrl_1126339436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126339436.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_203575912.pdb -s /var/tmp/to_scwrl_203575912.seq -o /var/tmp/from_scwrl_203575912.pdb > /var/tmp/scwrl_203575912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203575912.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1331065974.pdb -s /var/tmp/to_scwrl_1331065974.seq -o /var/tmp/from_scwrl_1331065974.pdb > /var/tmp/scwrl_1331065974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331065974.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1867086852.pdb -s /var/tmp/to_scwrl_1867086852.seq -o /var/tmp/from_scwrl_1867086852.pdb > /var/tmp/scwrl_1867086852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867086852.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_140632417.pdb -s /var/tmp/to_scwrl_140632417.seq -o /var/tmp/from_scwrl_140632417.pdb > /var/tmp/scwrl_140632417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_140632417.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1944541461.pdb -s /var/tmp/to_scwrl_1944541461.seq -o /var/tmp/from_scwrl_1944541461.pdb > /var/tmp/scwrl_1944541461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1944541461.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1465962873.pdb -s /var/tmp/to_scwrl_1465962873.seq -o /var/tmp/from_scwrl_1465962873.pdb > /var/tmp/scwrl_1465962873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1465962873.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_729775285.pdb -s /var/tmp/to_scwrl_729775285.seq -o /var/tmp/from_scwrl_729775285.pdb > /var/tmp/scwrl_729775285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729775285.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1755333212.pdb -s /var/tmp/to_scwrl_1755333212.seq -o /var/tmp/from_scwrl_1755333212.pdb > /var/tmp/scwrl_1755333212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755333212.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1912709773.pdb -s /var/tmp/to_scwrl_1912709773.seq -o /var/tmp/from_scwrl_1912709773.pdb > /var/tmp/scwrl_1912709773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1912709773.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1102711007.pdb -s /var/tmp/to_scwrl_1102711007.seq -o /var/tmp/from_scwrl_1102711007.pdb > /var/tmp/scwrl_1102711007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102711007.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1557498004.pdb -s /var/tmp/to_scwrl_1557498004.seq -o /var/tmp/from_scwrl_1557498004.pdb > /var/tmp/scwrl_1557498004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557498004.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1543893264.pdb -s /var/tmp/to_scwrl_1543893264.seq -o /var/tmp/from_scwrl_1543893264.pdb > /var/tmp/scwrl_1543893264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543893264.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_184880468.pdb -s /var/tmp/to_scwrl_184880468.seq -o /var/tmp/from_scwrl_184880468.pdb > /var/tmp/scwrl_184880468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_184880468.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_696162178.pdb -s /var/tmp/to_scwrl_696162178.seq -o /var/tmp/from_scwrl_696162178.pdb > /var/tmp/scwrl_696162178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696162178.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1484557548.pdb -s /var/tmp/to_scwrl_1484557548.seq -o /var/tmp/from_scwrl_1484557548.pdb > /var/tmp/scwrl_1484557548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484557548.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_987549572.pdb -s /var/tmp/to_scwrl_987549572.seq -o /var/tmp/from_scwrl_987549572.pdb > /var/tmp/scwrl_987549572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_987549572.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1205062713.pdb -s /var/tmp/to_scwrl_1205062713.seq -o /var/tmp/from_scwrl_1205062713.pdb > /var/tmp/scwrl_1205062713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205062713.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1406590032.pdb -s /var/tmp/to_scwrl_1406590032.seq -o /var/tmp/from_scwrl_1406590032.pdb > /var/tmp/scwrl_1406590032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406590032.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_495867341.pdb -s /var/tmp/to_scwrl_495867341.seq -o /var/tmp/from_scwrl_495867341.pdb > /var/tmp/scwrl_495867341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_495867341.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2130639994.pdb -s /var/tmp/to_scwrl_2130639994.seq -o /var/tmp/from_scwrl_2130639994.pdb > /var/tmp/scwrl_2130639994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130639994.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_832830833.pdb -s /var/tmp/to_scwrl_832830833.seq -o /var/tmp/from_scwrl_832830833.pdb > /var/tmp/scwrl_832830833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_832830833.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1794472180.pdb -s /var/tmp/to_scwrl_1794472180.seq -o /var/tmp/from_scwrl_1794472180.pdb > /var/tmp/scwrl_1794472180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794472180.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1647679479.pdb -s /var/tmp/to_scwrl_1647679479.seq -o /var/tmp/from_scwrl_1647679479.pdb > /var/tmp/scwrl_1647679479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647679479.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1797668651.pdb -s /var/tmp/to_scwrl_1797668651.seq -o /var/tmp/from_scwrl_1797668651.pdb > /var/tmp/scwrl_1797668651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1797668651.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1336582503.pdb -s /var/tmp/to_scwrl_1336582503.seq -o /var/tmp/from_scwrl_1336582503.pdb > /var/tmp/scwrl_1336582503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336582503.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_776959730.pdb -s /var/tmp/to_scwrl_776959730.seq -o /var/tmp/from_scwrl_776959730.pdb > /var/tmp/scwrl_776959730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776959730.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_999176861.pdb -s /var/tmp/to_scwrl_999176861.seq -o /var/tmp/from_scwrl_999176861.pdb > /var/tmp/scwrl_999176861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999176861.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2177547.pdb -s /var/tmp/to_scwrl_2177547.seq -o /var/tmp/from_scwrl_2177547.pdb > /var/tmp/scwrl_2177547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2177547.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2012371243.pdb -s /var/tmp/to_scwrl_2012371243.seq -o /var/tmp/from_scwrl_2012371243.pdb > /var/tmp/scwrl_2012371243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012371243.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1932948046.pdb -s /var/tmp/to_scwrl_1932948046.seq -o /var/tmp/from_scwrl_1932948046.pdb > /var/tmp/scwrl_1932948046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932948046.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1128516983.pdb -s /var/tmp/to_scwrl_1128516983.seq -o /var/tmp/from_scwrl_1128516983.pdb > /var/tmp/scwrl_1128516983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128516983.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_68463509.pdb -s /var/tmp/to_scwrl_68463509.seq -o /var/tmp/from_scwrl_68463509.pdb > /var/tmp/scwrl_68463509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68463509.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1116530374.pdb -s /var/tmp/to_scwrl_1116530374.seq -o /var/tmp/from_scwrl_1116530374.pdb > /var/tmp/scwrl_1116530374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116530374.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_848120189.pdb -s /var/tmp/to_scwrl_848120189.seq -o /var/tmp/from_scwrl_848120189.pdb > /var/tmp/scwrl_848120189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_848120189.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_209095926.pdb -s /var/tmp/to_scwrl_209095926.seq -o /var/tmp/from_scwrl_209095926.pdb > /var/tmp/scwrl_209095926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_209095926.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_913588189.pdb -s /var/tmp/to_scwrl_913588189.seq -o /var/tmp/from_scwrl_913588189.pdb > /var/tmp/scwrl_913588189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_913588189.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_166599416.pdb -s /var/tmp/to_scwrl_166599416.seq -o /var/tmp/from_scwrl_166599416.pdb > /var/tmp/scwrl_166599416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_166599416.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_938871211.pdb -s /var/tmp/to_scwrl_938871211.seq -o /var/tmp/from_scwrl_938871211.pdb > /var/tmp/scwrl_938871211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938871211.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_521437754.pdb -s /var/tmp/to_scwrl_521437754.seq -o /var/tmp/from_scwrl_521437754.pdb > /var/tmp/scwrl_521437754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521437754.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2079309189.pdb -s /var/tmp/to_scwrl_2079309189.seq -o /var/tmp/from_scwrl_2079309189.pdb > /var/tmp/scwrl_2079309189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079309189.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2041582218.pdb -s /var/tmp/to_scwrl_2041582218.seq -o /var/tmp/from_scwrl_2041582218.pdb > /var/tmp/scwrl_2041582218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041582218.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2078935758.pdb -s /var/tmp/to_scwrl_2078935758.seq -o /var/tmp/from_scwrl_2078935758.pdb > /var/tmp/scwrl_2078935758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2078935758.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1475718806.pdb -s /var/tmp/to_scwrl_1475718806.seq -o /var/tmp/from_scwrl_1475718806.pdb > /var/tmp/scwrl_1475718806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475718806.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_78979039.pdb -s /var/tmp/to_scwrl_78979039.seq -o /var/tmp/from_scwrl_78979039.pdb > /var/tmp/scwrl_78979039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78979039.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_627614290.pdb -s /var/tmp/to_scwrl_627614290.seq -o /var/tmp/from_scwrl_627614290.pdb > /var/tmp/scwrl_627614290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_627614290.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_812792709.pdb -s /var/tmp/to_scwrl_812792709.seq -o /var/tmp/from_scwrl_812792709.pdb > /var/tmp/scwrl_812792709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_812792709.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1066528611.pdb -s /var/tmp/to_scwrl_1066528611.seq -o /var/tmp/from_scwrl_1066528611.pdb > /var/tmp/scwrl_1066528611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066528611.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1832677003.pdb -s /var/tmp/to_scwrl_1832677003.seq -o /var/tmp/from_scwrl_1832677003.pdb > /var/tmp/scwrl_1832677003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1832677003.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_71899094.pdb -s /var/tmp/to_scwrl_71899094.seq -o /var/tmp/from_scwrl_71899094.pdb > /var/tmp/scwrl_71899094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71899094.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1562395951.pdb -s /var/tmp/to_scwrl_1562395951.seq -o /var/tmp/from_scwrl_1562395951.pdb > /var/tmp/scwrl_1562395951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562395951.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1815833350.pdb -s /var/tmp/to_scwrl_1815833350.seq -o /var/tmp/from_scwrl_1815833350.pdb > /var/tmp/scwrl_1815833350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1815833350.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_904729928.pdb -s /var/tmp/to_scwrl_904729928.seq -o /var/tmp/from_scwrl_904729928.pdb > /var/tmp/scwrl_904729928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_904729928.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1209384484.pdb -s /var/tmp/to_scwrl_1209384484.seq -o /var/tmp/from_scwrl_1209384484.pdb > /var/tmp/scwrl_1209384484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1209384484.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1316029182.pdb -s /var/tmp/to_scwrl_1316029182.seq -o /var/tmp/from_scwrl_1316029182.pdb > /var/tmp/scwrl_1316029182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1316029182.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_554914932.pdb -s /var/tmp/to_scwrl_554914932.seq -o /var/tmp/from_scwrl_554914932.pdb > /var/tmp/scwrl_554914932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554914932.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_398483341.pdb -s /var/tmp/to_scwrl_398483341.seq -o /var/tmp/from_scwrl_398483341.pdb > /var/tmp/scwrl_398483341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_398483341.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2092988913.pdb -s /var/tmp/to_scwrl_2092988913.seq -o /var/tmp/from_scwrl_2092988913.pdb > /var/tmp/scwrl_2092988913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2092988913.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1554091792.pdb -s /var/tmp/to_scwrl_1554091792.seq -o /var/tmp/from_scwrl_1554091792.pdb > /var/tmp/scwrl_1554091792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554091792.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_400660889.pdb -s /var/tmp/to_scwrl_400660889.seq -o /var/tmp/from_scwrl_400660889.pdb > /var/tmp/scwrl_400660889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_400660889.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1957876509.pdb -s /var/tmp/to_scwrl_1957876509.seq -o /var/tmp/from_scwrl_1957876509.pdb > /var/tmp/scwrl_1957876509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1957876509.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1339556192.pdb -s /var/tmp/to_scwrl_1339556192.seq -o /var/tmp/from_scwrl_1339556192.pdb > /var/tmp/scwrl_1339556192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1339556192.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)G90.O and (T0292)D91.N only 0.000 apart, marking (T0292)D91.N as missing WARNING: atoms too close: (T0292)L92.O and (T0292)A93.N only 0.000 apart, marking (T0292)A93.N as missing WARNING: atoms too close: (T0292)S199.O and (T0292)L200.N only 0.000 apart, marking (T0292)L200.N as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1529177872.pdb -s /var/tmp/to_scwrl_1529177872.seq -o /var/tmp/from_scwrl_1529177872.pdb > /var/tmp/scwrl_1529177872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529177872.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2026340018.pdb -s /var/tmp/to_scwrl_2026340018.seq -o /var/tmp/from_scwrl_2026340018.pdb > /var/tmp/scwrl_2026340018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2026340018.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_308602920.pdb -s /var/tmp/to_scwrl_308602920.seq -o /var/tmp/from_scwrl_308602920.pdb > /var/tmp/scwrl_308602920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_308602920.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_229814415.pdb -s /var/tmp/to_scwrl_229814415.seq -o /var/tmp/from_scwrl_229814415.pdb > /var/tmp/scwrl_229814415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229814415.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_87952297.pdb -s /var/tmp/to_scwrl_87952297.seq -o /var/tmp/from_scwrl_87952297.pdb > /var/tmp/scwrl_87952297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87952297.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1222191108.pdb -s /var/tmp/to_scwrl_1222191108.seq -o /var/tmp/from_scwrl_1222191108.pdb > /var/tmp/scwrl_1222191108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222191108.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_396413831.pdb -s /var/tmp/to_scwrl_396413831.seq -o /var/tmp/from_scwrl_396413831.pdb > /var/tmp/scwrl_396413831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_396413831.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1026823508.pdb -s /var/tmp/to_scwrl_1026823508.seq -o /var/tmp/from_scwrl_1026823508.pdb > /var/tmp/scwrl_1026823508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026823508.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1743628862.pdb -s /var/tmp/to_scwrl_1743628862.seq -o /var/tmp/from_scwrl_1743628862.pdb > /var/tmp/scwrl_1743628862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1743628862.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_328239373.pdb -s /var/tmp/to_scwrl_328239373.seq -o /var/tmp/from_scwrl_328239373.pdb > /var/tmp/scwrl_328239373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328239373.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_920922079.pdb -s /var/tmp/to_scwrl_920922079.seq -o /var/tmp/from_scwrl_920922079.pdb > /var/tmp/scwrl_920922079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_920922079.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1675080973.pdb -s /var/tmp/to_scwrl_1675080973.seq -o /var/tmp/from_scwrl_1675080973.pdb > /var/tmp/scwrl_1675080973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1675080973.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1803958179.pdb -s /var/tmp/to_scwrl_1803958179.seq -o /var/tmp/from_scwrl_1803958179.pdb > /var/tmp/scwrl_1803958179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1803958179.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_999901118.pdb -s /var/tmp/to_scwrl_999901118.seq -o /var/tmp/from_scwrl_999901118.pdb > /var/tmp/scwrl_999901118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999901118.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_155211616.pdb -s /var/tmp/to_scwrl_155211616.seq -o /var/tmp/from_scwrl_155211616.pdb > /var/tmp/scwrl_155211616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155211616.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_469267241.pdb -s /var/tmp/to_scwrl_469267241.seq -o /var/tmp/from_scwrl_469267241.pdb > /var/tmp/scwrl_469267241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_469267241.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_2066429728.pdb -s /var/tmp/to_scwrl_2066429728.seq -o /var/tmp/from_scwrl_2066429728.pdb > /var/tmp/scwrl_2066429728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2066429728.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 250 ; scwrl3 -i /var/tmp/to_scwrl_1987888619.pdb -s /var/tmp/to_scwrl_1987888619.seq -o /var/tmp/from_scwrl_1987888619.pdb > /var/tmp/scwrl_1987888619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1987888619.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 58.1322 sec, elapsed time= 1008.09 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_2.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -117.362 shub_TS1 costs 0 real_cost = -111.51 nFOLD_TS5-scwrl costs 0 real_cost = -95.2525 nFOLD_TS5 costs 0 real_cost = 49.3454 nFOLD_TS4-scwrl costs 0 real_cost = -28.8072 nFOLD_TS4 costs 0 real_cost = 113.029 nFOLD_TS3-scwrl costs 0 real_cost = -72.5792 nFOLD_TS3 costs 0 real_cost = 80.1367 nFOLD_TS2-scwrl costs 0 real_cost = -64.9278 nFOLD_TS2 costs 0 real_cost = 98.796 nFOLD_TS1-scwrl costs 0 real_cost = -75.2815 nFOLD_TS1 costs 0 real_cost = 87.6199 mGen-3D_TS1-scwrl costs 0 real_cost = -104.346 mGen-3D_TS1 costs 0 real_cost = 43.1789 keasar-server_TS5-scwrl costs 0 real_cost = -116.673 keasar-server_TS5 costs 0 real_cost = -124.811 keasar-server_TS4-scwrl costs 0 real_cost = -68.5943 keasar-server_TS4 costs 0 real_cost = -70.5377 keasar-server_TS3-scwrl costs 0 real_cost = -82.6162 keasar-server_TS3 costs 0 real_cost = -80.0184 keasar-server_TS2-scwrl costs 0 real_cost = -105.422 keasar-server_TS2 costs 0 real_cost = -101.199 keasar-server_TS1-scwrl costs 0 real_cost = -110.161 keasar-server_TS1 costs 0 real_cost = -106.121 karypis.srv_TS5-scwrl costs 0 real_cost = -115.32 karypis.srv_TS5 costs 0 real_cost = -115.32 karypis.srv_TS4-scwrl costs 0 real_cost = -84.359 karypis.srv_TS4 costs 0 real_cost = -84.359 karypis.srv_TS3-scwrl costs 0 real_cost = -104.581 karypis.srv_TS3 costs 0 real_cost = -103.886 karypis.srv_TS2-scwrl costs 0 real_cost = -101.42 karypis.srv_TS2 costs 0 real_cost = -102.691 karypis.srv_TS1-scwrl costs 0 real_cost = -125.417 karypis.srv_TS1 costs 0 real_cost = -129.217 karypis.srv.4_TS1-scwrl costs 0 real_cost = 317.727 karypis.srv.4_TS1 costs 0 real_cost = 323.895 karypis.srv.2_TS5-scwrl costs 0 real_cost = 314.374 karypis.srv.2_TS5 costs 0 real_cost = 314.374 karypis.srv.2_TS4-scwrl costs 0 real_cost = 303.319 karypis.srv.2_TS4 costs 0 real_cost = 303.319 karypis.srv.2_TS3-scwrl costs 0 real_cost = 293.044 karypis.srv.2_TS3 costs 0 real_cost = 293.044 karypis.srv.2_TS2-scwrl costs 0 real_cost = -132.035 karypis.srv.2_TS2 costs 0 real_cost = -132.035 karypis.srv.2_TS1-scwrl costs 0 real_cost = -138.723 karypis.srv.2_TS1 costs 0 real_cost = -138.723 gtg_AL5-scwrl costs 0 real_cost = -74.8877 gtg_AL5 costs 0 real_cost = 103.148 gtg_AL4-scwrl costs 0 real_cost = -33.3333 gtg_AL4 costs 0 real_cost = 143.311 gtg_AL3-scwrl costs 0 real_cost = -104.51 gtg_AL3 costs 0 real_cost = 87.1677 gtg_AL2-scwrl costs 0 real_cost = -82.5735 gtg_AL2 costs 0 real_cost = 105.343 gtg_AL1-scwrl costs 0 real_cost = -78.2573 gtg_AL1 costs 0 real_cost = 97.8207 forecast-s_AL5-scwrl costs 0 real_cost = -22.7606 forecast-s_AL5 costs 0 real_cost = 150.647 forecast-s_AL4-scwrl costs 0 real_cost = -74.4215 forecast-s_AL4 costs 0 real_cost = 119.347 forecast-s_AL3-scwrl costs 0 real_cost = -114.892 forecast-s_AL3 costs 0 real_cost = 90.5473 forecast-s_AL2-scwrl costs 0 real_cost = -64.4172 forecast-s_AL2 costs 0 real_cost = 137.427 forecast-s_AL1-scwrl costs 0 real_cost = -109.117 forecast-s_AL1 costs 0 real_cost = 77.7652 beautshotbase_TS1-scwrl costs 0 real_cost = -115.735 beautshotbase_TS1 costs 0 real_cost = -108.314 beautshot_TS1-scwrl costs 0 real_cost = -131.348 beautshot_TS1 costs 0 real_cost = -125.443 Zhang-Server_TS5-scwrl costs 0 real_cost = -162.473 Zhang-Server_TS5 costs 0 real_cost = -151.499 Zhang-Server_TS4-scwrl costs 0 real_cost = -181.179 Zhang-Server_TS4 costs 0 real_cost = -169.628 Zhang-Server_TS3-scwrl costs 0 real_cost = -110.978 Zhang-Server_TS3 costs 0 real_cost = -99.5914 Zhang-Server_TS2-scwrl costs 0 real_cost = -91.579 Zhang-Server_TS2 costs 0 real_cost = -88.9454 Zhang-Server_TS1-scwrl costs 0 real_cost = -169.148 Zhang-Server_TS1 costs 0 real_cost = -166.875 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -82.695 UNI-EID_sfst_AL5 costs 0 real_cost = 109.624 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -53.1158 UNI-EID_sfst_AL4 costs 0 real_cost = 136.02 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -70.1162 UNI-EID_sfst_AL3 costs 0 real_cost = 113.316 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 13.7374 UNI-EID_sfst_AL2 costs 0 real_cost = 193.855 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 23.3727 UNI-EID_sfst_AL1 costs 0 real_cost = 202.525 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 53.8945 UNI-EID_expm_TS1 costs 0 real_cost = 53.8945 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -86.695 UNI-EID_bnmx_TS5 costs 0 real_cost = 108.024 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -61.8296 UNI-EID_bnmx_TS4 costs 0 real_cost = 136.408 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -67.7169 UNI-EID_bnmx_TS3 costs 0 real_cost = 112.826 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 7.16856 UNI-EID_bnmx_TS2 costs 0 real_cost = 191.238 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 18.7172 UNI-EID_bnmx_TS1 costs 0 real_cost = 197.03 SPARKS2_TS5-scwrl costs 0 real_cost = -101.564 SPARKS2_TS5 costs 0 real_cost = -108.562 SPARKS2_TS4-scwrl costs 0 real_cost = -110.963 SPARKS2_TS4 costs 0 real_cost = -107.837 SPARKS2_TS3-scwrl costs 0 real_cost = -91.3377 SPARKS2_TS3 costs 0 real_cost = -84.4975 SPARKS2_TS2-scwrl costs 0 real_cost = -154.41 SPARKS2_TS2 costs 0 real_cost = -144.478 SPARKS2_TS1-scwrl costs 0 real_cost = -66.038 SPARKS2_TS1 costs 0 real_cost = -57.6003 SP4_TS5-scwrl costs 0 real_cost = -136.755 SP4_TS5 costs 0 real_cost = -132.001 SP4_TS4-scwrl costs 0 real_cost = -96.7046 SP4_TS4 costs 0 real_cost = -96.5284 SP4_TS3-scwrl costs 0 real_cost = -61.6965 SP4_TS3 costs 0 real_cost = -50.1855 SP4_TS2-scwrl costs 0 real_cost = -113.72 SP4_TS2 costs 0 real_cost = -116.487 SP4_TS1-scwrl costs 0 real_cost = -114.034 SP4_TS1 costs 0 real_cost = -96.4231 SP3_TS5-scwrl costs 0 real_cost = -63.7441 SP3_TS5 costs 0 real_cost = -52.558 SP3_TS4-scwrl costs 0 real_cost = -98.7398 SP3_TS4 costs 0 real_cost = -87.6914 SP3_TS3-scwrl costs 0 real_cost = -105.647 SP3_TS3 costs 0 real_cost = -109.742 SP3_TS2-scwrl costs 0 real_cost = -112.92 SP3_TS2 costs 0 real_cost = -104.143 SP3_TS1-scwrl costs 0 real_cost = -134.911 SP3_TS1 costs 0 real_cost = -119.7 SAM_T06_server_TS5-scwrl costs 0 real_cost = -62.4345 SAM_T06_server_TS5 costs 0 real_cost = -99.4579 SAM_T06_server_TS4-scwrl costs 0 real_cost = -89.6033 SAM_T06_server_TS4 costs 0 real_cost = -114.956 SAM_T06_server_TS3-scwrl costs 0 real_cost = -22.37 SAM_T06_server_TS3 costs 0 real_cost = -71.3653 SAM_T06_server_TS2-scwrl costs 0 real_cost = 210.108 SAM_T06_server_TS2 costs 0 real_cost = 73.6737 SAM_T06_server_TS1-scwrl costs 0 real_cost = -142.592 SAM_T06_server_TS1 costs 0 real_cost = -140.399 SAM-T99_AL5-scwrl costs 0 real_cost = -66.5199 SAM-T99_AL5 costs 0 real_cost = 97.2904 SAM-T99_AL4-scwrl costs 0 real_cost = -58.0314 SAM-T99_AL4 costs 0 real_cost = 99.8067 SAM-T99_AL3-scwrl costs 0 real_cost = -58.5408 SAM-T99_AL3 costs 0 real_cost = 100.248 SAM-T99_AL2-scwrl costs 0 real_cost = -63.8824 SAM-T99_AL2 costs 0 real_cost = 94.9231 SAM-T99_AL1-scwrl costs 0 real_cost = -62.9126 SAM-T99_AL1 costs 0 real_cost = 95.0719 SAM-T02_AL5-scwrl costs 0 real_cost = 20.1443 SAM-T02_AL5 costs 0 real_cost = 204.029 SAM-T02_AL4-scwrl costs 0 real_cost = -72.6491 SAM-T02_AL4 costs 0 real_cost = 113.672 SAM-T02_AL3-scwrl costs 0 real_cost = -88.0256 SAM-T02_AL3 costs 0 real_cost = 108.112 SAM-T02_AL2-scwrl costs 0 real_cost = -88.5204 SAM-T02_AL2 costs 0 real_cost = 103.411 SAM-T02_AL1-scwrl costs 0 real_cost = -103.809 SAM-T02_AL1 costs 0 real_cost = 85.2574 ROKKY_TS5-scwrl costs 0 real_cost = -107.678 ROKKY_TS5 costs 0 real_cost = -101.972 ROKKY_TS4-scwrl costs 0 real_cost = -105.542 ROKKY_TS4 costs 0 real_cost = -92.535 ROKKY_TS3-scwrl costs 0 real_cost = -105.495 ROKKY_TS3 costs 0 real_cost = -101.447 ROKKY_TS2-scwrl costs 0 real_cost = -142.841 ROKKY_TS2 costs 0 real_cost = -136.26 ROKKY_TS1-scwrl costs 0 real_cost = -131.841 ROKKY_TS1 costs 0 real_cost = -124.158 ROBETTA_TS5-scwrl costs 0 real_cost = -149.683 ROBETTA_TS5 costs 0 real_cost = -149.95 ROBETTA_TS4-scwrl costs 0 real_cost = -151.981 ROBETTA_TS4 costs 0 real_cost = -153.534 ROBETTA_TS3-scwrl costs 0 real_cost = -141.606 ROBETTA_TS3 costs 0 real_cost = -140.607 ROBETTA_TS2-scwrl costs 0 real_cost = -135.933 ROBETTA_TS2 costs 0 real_cost = -132.778 ROBETTA_TS1-scwrl costs 0 real_cost = -151.649 ROBETTA_TS1 costs 0 real_cost = -153.427 RAPTOR_TS5-scwrl costs 0 real_cost = -84.9698 RAPTOR_TS5 costs 0 real_cost = -89.2913 RAPTOR_TS4-scwrl costs 0 real_cost = -123.073 RAPTOR_TS4 costs 0 real_cost = -123.539 RAPTOR_TS3-scwrl costs 0 real_cost = -71.9461 RAPTOR_TS3 costs 0 real_cost = -63.916 RAPTOR_TS2-scwrl costs 0 real_cost = -136.838 RAPTOR_TS2 costs 0 real_cost = -134.674 RAPTOR_TS1-scwrl costs 0 real_cost = -148.943 RAPTOR_TS1 costs 0 real_cost = -148.019 RAPTORESS_TS5-scwrl costs 0 real_cost = -85.1265 RAPTORESS_TS5 costs 0 real_cost = -87.3961 RAPTORESS_TS4-scwrl costs 0 real_cost = -84.4586 RAPTORESS_TS4 costs 0 real_cost = -86.3252 RAPTORESS_TS3-scwrl costs 0 real_cost = -101.453 RAPTORESS_TS3 costs 0 real_cost = -102.76 RAPTORESS_TS2-scwrl costs 0 real_cost = -11.3669 RAPTORESS_TS2 costs 0 real_cost = -3.59128 RAPTORESS_TS1-scwrl costs 0 real_cost = -109.648 RAPTORESS_TS1 costs 0 real_cost = -102.619 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -135.034 RAPTOR-ACE_TS5 costs 0 real_cost = -125.686 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -123.906 RAPTOR-ACE_TS4 costs 0 real_cost = -113.265 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -136.772 RAPTOR-ACE_TS3 costs 0 real_cost = -130.153 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -134.911 RAPTOR-ACE_TS2 costs 0 real_cost = -119.7 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -135.123 RAPTOR-ACE_TS1 costs 0 real_cost = -122.523 Pmodeller6_TS5-scwrl costs 0 real_cost = -88.0382 Pmodeller6_TS5 costs 0 real_cost = -91.8413 Pmodeller6_TS4-scwrl costs 0 real_cost = -136.223 Pmodeller6_TS4 costs 0 real_cost = -137.715 Pmodeller6_TS3-scwrl costs 0 real_cost = -118.598 Pmodeller6_TS3 costs 0 real_cost = -118.598 Pmodeller6_TS2-scwrl costs 0 real_cost = -120.705 Pmodeller6_TS2 costs 0 real_cost = -120.883 Pmodeller6_TS1-scwrl costs 0 real_cost = -120.705 Pmodeller6_TS1 costs 0 real_cost = -120.883 Phyre-2_TS5-scwrl costs 0 real_cost = -113.821 Phyre-2_TS5 costs 0 real_cost = -120.766 Phyre-2_TS4-scwrl costs 0 real_cost = -118.945 Phyre-2_TS4 costs 0 real_cost = -128.411 Phyre-2_TS3-scwrl costs 0 real_cost = -110.659 Phyre-2_TS3 costs 0 real_cost = -120.63 Phyre-2_TS2-scwrl costs 0 real_cost = -119.169 Phyre-2_TS2 costs 0 real_cost = -130.467 Phyre-2_TS1-scwrl costs 0 real_cost = -118.413 Phyre-2_TS1 costs 0 real_cost = -121.383 Phyre-1_TS1-scwrl costs 0 real_cost = -6.55782 Phyre-1_TS1 costs 0 real_cost = -39.7592 Pcons6_TS5-scwrl costs 0 real_cost = -138.151 Pcons6_TS5 costs 0 real_cost = -138.151 Pcons6_TS4-scwrl costs 0 real_cost = -135.787 Pcons6_TS4 costs 0 real_cost = -136.132 Pcons6_TS3-scwrl costs 0 real_cost = -73.5699 Pcons6_TS3 costs 0 real_cost = -69.5891 Pcons6_TS2-scwrl costs 0 real_cost = -142.397 Pcons6_TS2 costs 0 real_cost = -146.597 Pcons6_TS1-scwrl costs 0 real_cost = -141.337 Pcons6_TS1 costs 0 real_cost = -145.137 PROTINFO_TS5-scwrl costs 0 real_cost = -52.0146 PROTINFO_TS5 costs 0 real_cost = -48.8145 PROTINFO_TS4-scwrl costs 0 real_cost = 19.0144 PROTINFO_TS4 costs 0 real_cost = 23.8836 PROTINFO_TS3-scwrl costs 0 real_cost = -116.087 PROTINFO_TS3 costs 0 real_cost = -114.192 PROTINFO_TS2-scwrl costs 0 real_cost = -99.6636 PROTINFO_TS2 costs 0 real_cost = -107.317 PROTINFO_TS1-scwrl costs 0 real_cost = -137.514 PROTINFO_TS1 costs 0 real_cost = -139.024 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -41.7001 PROTINFO-AB_TS5 costs 0 real_cost = -41.3686 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -37.3033 PROTINFO-AB_TS4 costs 0 real_cost = -33.4958 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -39.1668 PROTINFO-AB_TS3 costs 0 real_cost = -36.0901 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -35.2963 PROTINFO-AB_TS2 costs 0 real_cost = -35.4031 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -45.3623 PROTINFO-AB_TS1 costs 0 real_cost = -39.2963 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -106.955 NN_PUT_lab_TS1 costs 0 real_cost = -99.6644 MetaTasser_TS5-scwrl costs 0 real_cost = 288.109 MetaTasser_TS5 costs 0 real_cost = 291.401 MetaTasser_TS4-scwrl costs 0 real_cost = -44.1415 MetaTasser_TS4 costs 0 real_cost = -46.0444 MetaTasser_TS3-scwrl costs 0 real_cost = -19.5235 MetaTasser_TS3 costs 0 real_cost = -15.7026 MetaTasser_TS2-scwrl costs 0 real_cost = 236.613 MetaTasser_TS2 costs 0 real_cost = 242.664 MetaTasser_TS1-scwrl costs 0 real_cost = -30.5436 MetaTasser_TS1 costs 0 real_cost = -14.8756 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -51.2001 Ma-OPUS-server_TS5 costs 0 real_cost = -49.5562 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -122.254 Ma-OPUS-server_TS4 costs 0 real_cost = -120.578 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -61.3803 Ma-OPUS-server_TS3 costs 0 real_cost = -59.2017 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -131.838 Ma-OPUS-server_TS2 costs 0 real_cost = -116.962 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -131.783 Ma-OPUS-server_TS1 costs 0 real_cost = -126.9 MIG_FROST_AL1-scwrl costs 0 real_cost = -84.7262 MIG_FROST_AL1 costs 0 real_cost = -84.7262 LOOPP_TS5 costs 0 real_cost = -81.9744 LOOPP_TS4-scwrl costs 0 real_cost = -131.446 LOOPP_TS4 costs 0 real_cost = -123.217 LOOPP_TS3-scwrl costs 0 real_cost = -129.388 LOOPP_TS3 costs 0 real_cost = -126.065 LOOPP_TS2-scwrl costs 0 real_cost = -34.9565 LOOPP_TS2 costs 0 real_cost = -26.5635 LOOPP_TS1-scwrl costs 0 real_cost = -41.9818 LOOPP_TS1 costs 0 real_cost = -34.8848 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -10.7327 Huber-Torda-Server_TS5 costs 0 real_cost = 124.681 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -36.0053 Huber-Torda-Server_TS4 costs 0 real_cost = 100.725 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -58.4402 Huber-Torda-Server_TS3 costs 0 real_cost = 88.0054 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -35.5028 Huber-Torda-Server_TS2 costs 0 real_cost = 102.01 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -128.853 Huber-Torda-Server_TS1 costs 0 real_cost = 21.6268 HHpred3_TS1-scwrl costs 0 real_cost = -106.975 HHpred3_TS1 costs 0 real_cost = -104.832 HHpred2_TS1-scwrl costs 0 real_cost = -106.975 HHpred2_TS1 costs 0 real_cost = -104.832 HHpred1_TS1-scwrl costs 0 real_cost = -141.681 HHpred1_TS1 costs 0 real_cost = -134.492 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -126.475 GeneSilicoMetaServer_TS5 costs 0 real_cost = -123.334 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -114.233 GeneSilicoMetaServer_TS3 costs 0 real_cost = -110.157 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -130.613 GeneSilicoMetaServer_TS2 costs 0 real_cost = -124.645 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -145.146 GeneSilicoMetaServer_TS1 costs 0 real_cost = -140.654 Frankenstein_TS2-scwrl costs 0 real_cost = -151.968 Frankenstein_TS2 costs 0 real_cost = -143.342 Frankenstein_TS1-scwrl costs 0 real_cost = -119.267 Frankenstein_TS1 costs 0 real_cost = -106.224 FUNCTION_TS5-scwrl costs 0 real_cost = -95.7164 FUNCTION_TS5 costs 0 real_cost = -93.921 FUNCTION_TS4-scwrl costs 0 real_cost = -87.1037 FUNCTION_TS4 costs 0 real_cost = -89.2141 FUNCTION_TS3-scwrl costs 0 real_cost = -101.338 FUNCTION_TS3 costs 0 real_cost = -103.287 FUNCTION_TS2-scwrl costs 0 real_cost = -98.1665 FUNCTION_TS2 costs 0 real_cost = -107.686 FUNCTION_TS1-scwrl costs 0 real_cost = -92.819 FUNCTION_TS1 costs 0 real_cost = -90.4186 FUGUE_AL5-scwrl costs 0 real_cost = -105.491 FUGUE_AL5 costs 0 real_cost = 100.529 FUGUE_AL4-scwrl costs 0 real_cost = -58.5783 FUGUE_AL4 costs 0 real_cost = 141.043 FUGUE_AL3-scwrl costs 0 real_cost = -52.8004 FUGUE_AL3 costs 0 real_cost = 148.326 FUGUE_AL2-scwrl costs 0 real_cost = 234.736 FUGUE_AL2 costs 0 real_cost = 343.007 FUGUE_AL1-scwrl costs 0 real_cost = 20.5708 FUGUE_AL1 costs 0 real_cost = 187.746 FUGMOD_TS5-scwrl costs 0 real_cost = -129.689 FUGMOD_TS5 costs 0 real_cost = -135.728 FUGMOD_TS4-scwrl costs 0 real_cost = -110.764 FUGMOD_TS4 costs 0 real_cost = -94.9173 FUGMOD_TS3-scwrl costs 0 real_cost = -108.915 FUGMOD_TS3 costs 0 real_cost = -106.669 FUGMOD_TS2-scwrl costs 0 real_cost = 96.8206 FUGMOD_TS2 costs 0 real_cost = 98.6337 FUGMOD_TS1-scwrl costs 0 real_cost = -82.8132 FUGMOD_TS1 costs 0 real_cost = -74.8968 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 308.079 FPSOLVER-SERVER_TS1 costs 0 real_cost = 313.44 FORTE2_AL5-scwrl costs 0 real_cost = -27.6441 FORTE2_AL5 costs 0 real_cost = 166.765 FORTE2_AL4-scwrl costs 0 real_cost = -97.6258 FORTE2_AL4 costs 0 real_cost = 97.1274 FORTE2_AL3-scwrl costs 0 real_cost = -51.1297 FORTE2_AL3 costs 0 real_cost = 146.173 FORTE2_AL2-scwrl costs 0 real_cost = -75.5354 FORTE2_AL2 costs 0 real_cost = 112.954 FORTE2_AL1-scwrl costs 0 real_cost = -75.4298 FORTE2_AL1 costs 0 real_cost = 125.608 FORTE1_AL5-scwrl costs 0 real_cost = -67.1399 FORTE1_AL5 costs 0 real_cost = 134.644 FORTE1_AL4-scwrl costs 0 real_cost = -75.5354 FORTE1_AL4 costs 0 real_cost = 112.954 FORTE1_AL3-scwrl costs 0 real_cost = -91.856 FORTE1_AL3 costs 0 real_cost = 115.626 FORTE1_AL2-scwrl costs 0 real_cost = -40.5815 FORTE1_AL2 costs 0 real_cost = 156.829 FORTE1_AL1-scwrl costs 0 real_cost = -75.4298 FORTE1_AL1 costs 0 real_cost = 125.608 FOLDpro_TS5-scwrl costs 0 real_cost = -54.3044 FOLDpro_TS5 costs 0 real_cost = -48.8312 FOLDpro_TS4-scwrl costs 0 real_cost = 188.796 FOLDpro_TS4 costs 0 real_cost = 194.693 FOLDpro_TS3-scwrl costs 0 real_cost = 303.385 FOLDpro_TS3 costs 0 real_cost = 309.052 FOLDpro_TS2-scwrl costs 0 real_cost = 30.8988 FOLDpro_TS2 costs 0 real_cost = 45.7344 FOLDpro_TS1-scwrl costs 0 real_cost = -131.096 FOLDpro_TS1 costs 0 real_cost = -125.533 FAMS_TS5-scwrl costs 0 real_cost = -127.393 FAMS_TS5 costs 0 real_cost = -116.187 FAMS_TS4-scwrl costs 0 real_cost = -101.32 FAMS_TS4 costs 0 real_cost = -115.398 FAMS_TS3-scwrl costs 0 real_cost = -127.446 FAMS_TS3 costs 0 real_cost = -123.968 FAMS_TS2-scwrl costs 0 real_cost = -110.556 FAMS_TS2 costs 0 real_cost = -113.132 FAMS_TS1-scwrl costs 0 real_cost = -90.2854 FAMS_TS1 costs 0 real_cost = -86.2407 FAMSD_TS5-scwrl costs 0 real_cost = -110.671 FAMSD_TS5 costs 0 real_cost = -102.205 FAMSD_TS4-scwrl costs 0 real_cost = -54.2283 FAMSD_TS4 costs 0 real_cost = -49.3558 FAMSD_TS3-scwrl costs 0 real_cost = -103.223 FAMSD_TS3 costs 0 real_cost = -112.549 FAMSD_TS2-scwrl costs 0 real_cost = -101.32 FAMSD_TS2 costs 0 real_cost = -115.398 FAMSD_TS1-scwrl costs 0 real_cost = -132.392 FAMSD_TS1 costs 0 real_cost = -123.038 Distill_TS5-scwrl costs 0 real_cost = 458.639 Distill_TS4-scwrl costs 0 real_cost = 452.812 Distill_TS3-scwrl costs 0 real_cost = 457.991 Distill_TS2-scwrl costs 0 real_cost = 457.814 Distill_TS1-scwrl costs 0 real_cost = 455.845 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -84.8816 CaspIta-FOX_TS5 costs 0 real_cost = -88.9745 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -56.3216 CaspIta-FOX_TS4 costs 0 real_cost = -55.0774 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -99.093 CaspIta-FOX_TS3 costs 0 real_cost = -100.281 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -112.725 CaspIta-FOX_TS2 costs 0 real_cost = -110.468 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 15.1869 CaspIta-FOX_TS1 costs 0 real_cost = 10.4251 CIRCLE_TS5-scwrl costs 0 real_cost = -103.223 CIRCLE_TS5 costs 0 real_cost = -112.549 CIRCLE_TS4-scwrl costs 0 real_cost = -127.393 CIRCLE_TS4 costs 0 real_cost = -116.187 CIRCLE_TS3-scwrl costs 0 real_cost = -90.2854 CIRCLE_TS3 costs 0 real_cost = -86.2407 CIRCLE_TS2-scwrl costs 0 real_cost = -127.446 CIRCLE_TS2 costs 0 real_cost = -123.968 CIRCLE_TS1-scwrl costs 0 real_cost = -110.556 CIRCLE_TS1 costs 0 real_cost = -113.132 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -153.349 Bilab-ENABLE_TS5 costs 0 real_cost = -153.349 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -129.57 Bilab-ENABLE_TS4 costs 0 real_cost = -129.57 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -102.502 Bilab-ENABLE_TS3 costs 0 real_cost = -102.502 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -91.274 Bilab-ENABLE_TS2 costs 0 real_cost = -91.274 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -63.9023 Bilab-ENABLE_TS1 costs 0 real_cost = -63.9023 BayesHH_TS1-scwrl costs 0 real_cost = -113.192 BayesHH_TS1 costs 0 real_cost = -112.855 ABIpro_TS5-scwrl costs 0 real_cost = 242.219 ABIpro_TS5 costs 0 real_cost = 242.218 ABIpro_TS4-scwrl costs 0 real_cost = 229.276 ABIpro_TS4 costs 0 real_cost = 228.007 ABIpro_TS3-scwrl costs 0 real_cost = 229.558 ABIpro_TS3 costs 0 real_cost = 229.552 ABIpro_TS2-scwrl costs 0 real_cost = 210.18 ABIpro_TS2 costs 0 real_cost = 210.239 ABIpro_TS1-scwrl costs 0 real_cost = 238.585 ABIpro_TS1 costs 0 real_cost = 238.589 3Dpro_TS5-scwrl costs 0 real_cost = -4.19972 3Dpro_TS5 costs 0 real_cost = 2.14175 3Dpro_TS4-scwrl costs 0 real_cost = 103.109 3Dpro_TS4 costs 0 real_cost = 116.738 3Dpro_TS3-scwrl costs 0 real_cost = 193.064 3Dpro_TS3 costs 0 real_cost = 200.308 3Dpro_TS2-scwrl costs 0 real_cost = -54.5832 3Dpro_TS2 costs 0 real_cost = -48.2428 3Dpro_TS1-scwrl costs 0 real_cost = -124.291 3Dpro_TS1 costs 0 real_cost = -119.466 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -36.8641 3D-JIGSAW_TS5 costs 0 real_cost = -30.5953 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -45.8658 3D-JIGSAW_TS4 costs 0 real_cost = -57.9167 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -46.5276 3D-JIGSAW_TS3 costs 0 real_cost = -41.7209 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -53.2152 3D-JIGSAW_TS2 costs 0 real_cost = -55.0057 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -51.2558 3D-JIGSAW_TS1 costs 0 real_cost = -52.9013 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -45.6447 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -52.711 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -45.6658 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -42.7472 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -43.9694 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -30.964 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -41.0747 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -29.9113 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -45.105 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -37.41 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -61.9728 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -65.1889 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -54.7431 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -57.7828 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -41.6091 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -44.8113 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -0.911526 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -4.58049 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -58.0251 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -60.3093 chimera-try5-server.pdb.gz costs 0 real_cost = -159.991 T0292.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -157.784 T0292.try7-opt2.pdb.gz costs 0 real_cost = -163.122 T0292.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -163.001 T0292.try7-opt1.pdb.gz costs 0 real_cost = -162.485 T0292.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -162.241 T0292.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -160.036 T0292.try6-opt2.pdb.gz costs 0 real_cost = -162.719 T0292.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -158.706 T0292.try6-opt1.pdb.gz costs 0 real_cost = -161.285 T0292.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -162.288 T0292.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -154.401 T0292.try5-opt2.pdb.gz costs 0 real_cost = -156.869 T0292.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -157.39 T0292.try5-opt1.pdb.gz costs 0 real_cost = -159.209 T0292.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -159.676 T0292.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -154.471 T0292.try4-opt2.pdb.gz costs 0 real_cost = -158.5 T0292.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -157.805 T0292.try4-opt1.pdb.gz costs 0 real_cost = -155.396 T0292.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -154.883 T0292.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -152.152 T0292.try3-opt2.pdb.gz costs 0 real_cost = -153.811 T0292.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -153.134 T0292.try3-opt1.pdb.gz costs 0 real_cost = -158.332 T0292.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -160.055 T0292.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -159.298 T0292.try2-opt2.pdb.gz costs 0 real_cost = -157.972 T0292.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -158.888 T0292.try2-opt1.pdb.gz costs 0 real_cost = -155.343 T0292.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -156.917 T0292.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 38.8844 T0292.try1-opt2.pdb.gz costs 0 real_cost = 37.8099 T0292.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 42.2258 T0292.try1-opt1.pdb.gz costs 0 real_cost = 35.4823 T0292.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 36.2269 ../model5.ts-submitted costs 0 real_cost = -43.1514 ../model4.ts-submitted costs 0 real_cost = -140.574 ../model3.ts-submitted costs 0 real_cost = -154.02 ../model2.ts-submitted costs 0 real_cost = -154.522 ../model1.ts-submitted costs 0 real_cost = -163.054 align5 costs 0 real_cost = -87.7441 align4 costs 0 real_cost = 6.48758 align3 costs 0 real_cost = -24.7694 align2 costs 0 real_cost = -50.7596 align1 costs 0 real_cost = -65.465 T0292.try1-opt2.pdb costs 0 real_cost = 37.8099 model5-scwrl costs 0 real_cost = 35.3427 model5.ts-submitted costs 0 real_cost = -43.1514 model4-scwrl costs 0 real_cost = -142.765 model4.ts-submitted costs 0 real_cost = -140.574 model3-scwrl costs 0 real_cost = -155.455 model3.ts-submitted costs 0 real_cost = -154.02 model2-scwrl costs 0 real_cost = -156.764 model2.ts-submitted costs 0 real_cost = -154.522 model1-scwrl costs 0 real_cost = -161.53 model1.ts-submitted costs 0 real_cost = -163.05 T0292_2.real.pdb costs 0 real_cost = -712.8 # command:CPU_time= 778.988 sec, elapsed time= 1729.37 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_2.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_2.rdb mv -f decoys/evaluate_2.pretty decoys/evaluate_2.pretty.old mv: cannot stat `decoys/evaluate_2.pretty': No such file or directory make: [decoys/evaluate_2.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_2.rdb > decoys/evaluate_2.pretty