# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz8A 299 8.07e-43 d.144.1.7 83405 1rdqE 350 1.40e-39 d.144.1.7 97314 2evaA 307 2.42e-39 1ia8A 289 6.80e-39 1ia8A d.144.1.7 62112 1fgkA 310 1.14e-37 1fgkA d.144.1.7 41693 1t4hA 290 3.10e-37 d.144.1.7 106420 1p4oA 322 2.55e-36 d.144.1.7 87775 1j1bA 420 2.96e-36 d.144.1.7 90758 2bikB 313 4.50e-35 1z57A 339 2.30e-33 1csn 298 9.57e-27 1csn d.144.1.7 41664 1e8yA 966 6.32e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1dtdA 303 6.49e-02 1aye c.56.5.1 33823 1e7uA 961 9.80e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1jb3A 131 3.84e-01 1jc7A b.40.3.2 62833 2gq1A 332 6.49e-01 1gveA 327 7.87e-01 c.1.7.1 70597 1x6iA 91 1.51e+00 1uuzA 137 1.52e+00 d.233.1.1 100024 1sgwA 214 2.11e+00 c.37.1.12 105541 1w2fA 276 2.23e+00 d.143.1.3 109125 1b5l 172 2.61e+00 1b5l a.26.1.3 16900 1i7hA 111 3.31e+00 d.15.4.1 71122 1m4lA 307 3.34e+00 c.56.5.1 78604 1fepA 724 3.60e+00 1fepA f.4.3.3 43808 1gnlA 544 4.25e+00 e.26.1.1 70287 1shuX 182 4.38e+00 c.62.1.1 98882 1lzlA 323 4.41e+00 c.69.1.2 78306 1j6oA 268 4.43e+00 c.1.9.12 77088 2dfkA 402 5.02e+00 1gsoA 431 5.10e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1qnrA 344 5.25e+00 1qnoA c.1.8.3 28834 1aj8A 371 5.29e+00 1aj8A a.103.1.1 18900 1d2mA 665 5.39e+00 1d2mA c.37.1.19,c.37.1.19 32417,32418 1g8iA 190 5.66e+00 1rec a.39.1.5 60363 1r89A 437 5.95e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1iu8A 206 6.51e+00 c.56.4.1 71436 1rwiA 270 6.53e+00 b.68.9.1 97987 1esc 306 6.67e+00 1esc c.23.10.1 31334 1ejdA 419 7.01e+00 1uae d.68.2.2 39576 1w0hA 204 7.71e+00 1uasA 362 8.02e+00 b.71.1.1,c.1.8.1 88388,88389 1cjaA 342 8.03e+00 1cjaA d.144.1.3 41708 1te2A 226 8.04e+00 c.108.1.6 106792 1ls1A 295 8.25e+00 a.24.13.1,c.37.1.10 78170,78171 1bf6A 291 8.30e+00 1pscA c.1.9.3 29065 1na3A 91 8.46e+00 k.38.1.1 85481 1twdA 256 8.61e+00 c.1.30.1 107397 1bli 483 8.84e+00 1bli b.71.1.1,c.1.8.1 27715,28702 1uebA 184 9.00e+00 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1g291 372 9.07e+00 1g291 1bcpB 199 9.42e+00 1bcpB b.40.2.1,d.169.1.2 25120,42429 1cpt 412 9.71e+00 1cpt a.104.1.1 18968 1e2kA 331 1.03e+01 1qhiA c.37.1.1 31854 1ad2 228 1.18e+01 1ad2 e.24.1.1 43353 1fp1D 372 1.18e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1s95A 333 1.28e+01 d.159.1.3 105375 1go4A 205 1.29e+01 d.135.1.1 70292 1lxjA 104 1.38e+01 d.58.48.1 84736 1gjjA 168 1.44e+01 a.140.1.1,a.140.1.1 83291,83292 1auiB 169 1.50e+01 1auiB a.39.1.5 17325 1e43A 483 1.52e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1ihgA 370 1.69e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1i27A 73 1.70e+01 1i27A a.4.5.30 61555 1cojA 212 1.75e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1at3A 247 1.78e+01 1at3A b.57.1.1 27021 1uuqA 440 1.79e+01 c.1.8.3 100015 1jfrA 262 1.97e+01 1jfrA c.69.1.16 34724 1iy8A 267 1.98e+01 c.2.1.2 83774 1j24A 143 2.06e+01 c.52.1.20 84008 1g8aA 227 2.15e+01 c.66.1.3 90506 1d2nA 272 2.15e+01 1d2nA c.37.1.20 32428 1uj2A 252 2.21e+01 c.37.1.6 99452 1qnaA 200 2.25e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1fs5A 266 2.30e+01 c.124.1.1 65044 1nlnA 204 2.34e+01 d.3.1.7 91962 1syyA 346 2.34e+01 a.25.1.2 106126 1kw4A 89 2.46e+01 a.60.1.2 73077 1f8fA 371 2.48e+01 b.35.1.2,c.2.1.1 83246,83247 1nykA 165 2.49e+01 b.33.1.1 86408 1txlA 215 2.49e+01 b.60.1.4 107429 1lm5A 214 2.52e+01 d.211.2.1 74029 1ir21 140 2.55e+01 1e6wA 260 2.60e+01 1e6wA c.2.1.2 59326 1whzA 70 2.62e+01 3bamA 213 2.64e+01 1bam c.52.1.3 33288 1mzbA 136 2.65e+01 a.4.5.42 91497 1szhA 161 2.70e+01 a.226.1.1 106157 1fpzA 212 2.80e+01 1fpzA c.45.1.1 59976 1c75A 71 2.82e+01 451c a.3.1.1 15796 1feuA 206 2.91e+01 1feuA b.53.1.1 59801 1p3dA 475 2.92e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1a8y 367 2.97e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1hx6A 394 3.01e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1ewnA 219 3.01e+01 1bnkA b.46.1.2 25762 1ng6A 148 3.03e+01 a.182.1.1 85670 1xyiA 66 3.04e+01 1ff9A 450 3.07e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1y8aA 332 3.10e+01 1dbqA 289 3.16e+01 1qpzA c.93.1.1 35666 1gvzA 237 3.20e+01 b.47.1.2 76360 1c3pA 375 3.21e+01 1c3pA c.42.1.2 32606 1c0pA 363 3.22e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1g7sA 594 3.23e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2gdm 153 3.29e+01 2gdm a.1.1.2 15212 1gk8I 140 3.29e+01 d.73.1.1 65242 1fjgQ 105 3.32e+01 1fjfQ b.40.4.5 25352 1wp5A 323 3.32e+01 1sg6A 393 3.36e+01 e.22.1.1 105522 1nxuA 333 3.38e+01 c.122.1.1 86389 1ufyA 122 3.48e+01 d.79.1.2 88489 1eu8A 409 3.52e+01 1eu8A c.94.1.1 59502 1f3vA 179 3.55e+01 1f3vA d.58.22.1 39382 1e25A 282 3.69e+01 1e25A e.3.1.1 42731 1g6hA 257 3.74e+01 1gajA c.37.1.12 60318 1dpe 507 3.77e+01 1dpe c.94.1.1 35799 1jf3A 147 3.83e+01 a.1.1.2 71642 1wb4A 297 3.85e+01 1q7eA 428 3.93e+01 c.123.1.1 96035 1ox0A 430 3.96e+01 c.95.1.1,c.95.1.1 87495,87496 1sfxA 109 3.99e+01 a.4.5.50 105505 1iuqA 367 4.02e+01 c.112.1.1 90703 1usgA 346 4.03e+01 c.93.1.1 99864 1hs7A 97 4.04e+01 1hs7A a.47.2.1 61236 1wouA 123 4.11e+01 c.47.1.16 109471 1bd3A 243 4.11e+01 1bd3A c.61.1.1 34098 1w3iA 293 4.18e+01 c.1.10.1 109152 1iooA 196 4.21e+01 d.124.1.1 71250 1k94A 165 4.23e+01 a.39.1.8 68333 2gk9A 426 4.26e+01 1cb0A 283 4.27e+01 1cb0A c.56.2.1 33790 1ra0A 430 4.35e+01 1e2wA 251 4.39e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1n8kA 374 4.41e+01 b.35.1.2,c.2.1.1 80298,80299 1qgvA 142 4.44e+01 1qgvA c.47.1.8 33056 1p99A 295 4.44e+01 c.94.1.1 94384 1fkmA 396 4.45e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1qz5A 375 4.54e+01 c.55.1.1,c.55.1.1 96614,96615 1gpc 218 4.57e+01 1gpc b.40.4.7 25393 1ew6A 137 4.62e+01 1ewaA a.1.1.2 15637 1aquA 297 4.63e+01 1aquA c.37.1.5 31942 1fm0E 150 4.69e+01 1fmaE d.41.5.1 38629 1j0hA 588 4.76e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1tqhA 247 4.85e+01 c.69.1.29 107225 1qksA 567 4.94e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1jfzA 154 4.95e+01 a.149.1.1 66655 1lfpA 249 5.03e+01 e.39.1.1 73885 1bn7A 294 5.04e+01 1bn6A c.69.1.8 34677 1ji7A 89 5.04e+01 a.60.1.1 71682 1h4aX 173 5.07e+01 b.11.1.1,b.11.1.1 83479,83480 1qusA 322 5.07e+01 1ltm d.2.1.6 36991 1kwfA 363 5.08e+01 a.102.1.2 73078 1pot 325 5.12e+01 1pot c.94.1.1 35807 2arcA 164 5.14e+01 2arcA b.82.4.1 28148 1tl9A 339 5.15e+01 1gudA 288 5.19e+01 c.93.1.1 83326 1kq3A 376 5.31e+01 e.22.1.2 68790 1d1qA 161 5.33e+01 1dg9A c.44.1.1 32642 1xocA 520 5.36e+01 1dqpA 230 5.36e+01 1dqnA c.61.1.1 34069 1aj2 282 5.40e+01 1aj2 c.1.21.1 29665 1dusA 194 5.43e+01 1dusA c.66.1.4 34182 1r6xA 395 5.43e+01 b.122.1.3,c.26.1.5 97167,97168 1h8eG 272 5.48e+01 1e79G c.49.2.1 60756 1g3mA 294 5.51e+01 c.37.1.5 83268 1i52A 236 5.51e+01 1i52A c.68.1.13 61767 1f39A 101 5.57e+01 1umuA b.87.1.1 28386 1t7rA 269 5.60e+01 a.123.1.1 106635 1g8sA 230 5.61e+01 c.66.1.3 90507 1vhqA 232 5.67e+01 c.23.16.2 100696 1tbfA 347 5.74e+01 a.211.1.2 106743 1c4oA 664 5.75e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1q7zA 566 6.01e+01 c.1.21.2,c.1.26.1 96090,96091 1hf2A 210 6.04e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1g6gA 127 6.05e+01 1g6gA b.26.1.2 23916 1dkuA 317 6.13e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1gp6A 356 6.24e+01 b.82.2.1 65441 1psrA 100 6.24e+01 1psrA a.39.1.2 17180 1l7aA 318 6.26e+01 c.69.1.25 77772 1vknA 351 6.44e+01 c.2.1.3,d.81.1.1 108676,108677 1jv1A 505 6.52e+01 c.68.1.5 71892 1sw5A 275 6.53e+01 c.94.1.1 106069 2gkpA 167 6.53e+01 1ifrA 121 6.55e+01 b.1.16.1 71203 1v2bA 177 6.62e+01 d.107.1.2 108279 1gwiA 411 6.62e+01 a.104.1.1 76364 1ia9A 280 6.68e+01 1ia9A d.144.1.5 62113 1dbiA 280 6.68e+01 1gci c.41.1.1 32543 1o9gA 250 6.69e+01 c.66.1.29 86692 1bjaA 95 6.84e+01 1bjaA a.4.5.9 16122 1qf8A 182 6.89e+01 1qf8A g.41.4.1 45212 1cb8A 678 6.90e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1ail 73 6.97e+01 1ail a.16.1.1 16381 1v2zA 111 7.15e+01 a.186.1.1 108300 1iirA 415 7.17e+01 1iirA c.87.1.5 62453 1omrA 201 7.22e+01 a.39.1.5 93349 1h99A 224 7.23e+01 a.142.1.1,a.142.1.1 60814,60815 2dpmA 284 7.28e+01 2dpmA c.66.1.28 34246 1o97C 264 7.30e+01 c.26.2.3 81232 1mh1 186 7.31e+01 1eesA c.37.1.8 32002 1ixh 321 7.40e+01 1ixh c.94.1.1 35761 1erjA 393 7.41e+01 1erjA b.69.4.1 27660 1e8aA 91 7.60e+01 1b4cA a.39.1.2 17188 1ijbA 202 7.63e+01 c.62.1.1 71229 1sj1A 66 7.63e+01 d.58.1.4 105595 2gk4A 232 7.73e+01 1ug6A 431 7.81e+01 c.1.8.4 88490 1gpmA 525 7.82e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1f60B 94 8.06e+01 1b64 d.58.12.1 39307 1t6cA 315 8.10e+01 c.55.1.8,c.55.1.8 106558,106559 1eexA 554 8.14e+01 1dioA c.1.19.3 29650 1yv4A 104 8.15e+01 1eejA 216 8.15e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 2bkaA 242 8.29e+01 1a0p 290 8.46e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1fmjA 351 8.54e+01 c.37.1.5 59879 1k3yA 221 8.54e+01 a.45.1.1,c.47.1.5 77245,77246 1ex2A 189 8.55e+01 1ex2A c.51.4.2 33225 1vjvA 415 8.57e+01 d.3.1.9 108632 1j3aA 142 8.60e+01 c.21.1.1 77070 1gntA 553 8.62e+01 e.26.1.1 70290 1b35B 255 8.68e+01 1b35B b.121.4.1 23334 1exbA 332 8.78e+01 1qrqA c.1.7.1 28666 1mtyD 512 8.79e+01 1mhyD a.25.1.2 16742 1t6t1 118 8.79e+01 1rliA 184 8.82e+01 c.23.5.6 97647 1dqeA 137 8.86e+01 1dqeA a.39.2.1 17388 1yn9A 169 8.89e+01 1j98A 157 8.92e+01 1j98A d.185.1.2 62755 1m45A 148 8.96e+01 a.39.1.5 78598