# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz8A 299 1.65e-42 d.144.1.7 83405 2evaA 307 1.08e-39 1ia8A 289 1.57e-39 1ia8A d.144.1.7 62112 1rdqE 350 5.09e-39 d.144.1.7 97314 1fgkA 310 1.48e-38 1fgkA d.144.1.7 41693 1p4oA 322 7.31e-38 d.144.1.7 87775 1t4hA 290 1.74e-37 d.144.1.7 106420 2bikB 313 5.23e-36 1j1bA 420 2.01e-35 d.144.1.7 90758 1z57A 339 2.72e-33 1csn 298 2.81e-27 1csn d.144.1.7 41664 1esc 306 6.73e-02 1esc c.23.10.1 31334 1gveA 327 8.77e-01 c.1.7.1 70597 1c3pA 375 9.29e-01 1c3pA c.42.1.2 32606 1uuzA 137 1.05e+00 d.233.1.1 100024 2gq1A 332 1.13e+00 1ejdA 419 1.90e+00 1uae d.68.2.2 39576 1e8yA 966 2.51e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1nlnA 204 2.79e+00 d.3.1.7 91962 1vknA 351 3.30e+00 c.2.1.3,d.81.1.1 108676,108677 1d7oA 297 3.64e+00 1enp c.2.1.2 29907 1e4mM 501 3.71e+00 1e70M c.1.8.4 59226 1e7uA 961 3.99e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1w0hA 204 4.52e+00 1go4A 205 4.73e+00 d.135.1.1 70292 1bcpB 199 4.82e+00 1bcpB b.40.2.1,d.169.1.2 25120,42429 1w2fA 276 7.60e+00 d.143.1.3 109125 1bn7A 294 9.32e+00 1bn6A c.69.1.8 34677 1ihgA 370 9.60e+00 2cpl a.118.8.1,b.62.1.1 62380,62381 1g8aA 227 1.00e+01 c.66.1.3 90506 1fltX 95 1.13e+01 1fltX b.1.1.4 21765 1oafA 261 1.18e+01 a.93.1.1 86734 1na3A 91 1.19e+01 k.38.1.1 85481 1i2sA 282 1.24e+01 e.3.1.1 71104 1s5dA 240 1.26e+01 d.166.1.1 98541 1j24A 143 1.28e+01 c.52.1.20 84008 1gxqA 106 1.30e+01 a.4.6.1 70721 1r77A 103 1.31e+01 1dozA 309 1.31e+01 1ak1 c.92.1.1 35592 1ufoA 238 1.33e+01 c.69.1.27 99344 1qnrA 344 1.40e+01 1qnoA c.1.8.3 28834 1t6cA 315 1.41e+01 c.55.1.8,c.55.1.8 106558,106559 1cjaA 342 1.42e+01 1cjaA d.144.1.3 41708 1lzlA 323 1.55e+01 c.69.1.2 78306 1h72C 296 1.58e+01 d.14.1.5,d.58.26.1 60712,60713 1yc5A 246 1.61e+01 1mtyD 512 1.66e+01 1mhyD a.25.1.2 16742 1it2A 146 1.67e+01 a.1.1.2 66365 1szhA 161 1.69e+01 a.226.1.1 106157 1jfrA 262 1.79e+01 1jfrA c.69.1.16 34724 1mtpA 323 1.79e+01 e.1.1.1 85107 1iu8A 206 1.79e+01 c.56.4.1 71436 1m33A 258 1.98e+01 c.69.1.26 78514 1dbiA 280 2.02e+01 1gci c.41.1.1 32543 1cojA 212 2.04e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1cpt 412 2.04e+01 1cpt a.104.1.1 18968 1br9 194 2.30e+01 1br9 b.40.3.1 25235 1ox0A 430 2.32e+01 c.95.1.1,c.95.1.1 87495,87496 1g8iA 190 2.34e+01 1rec a.39.1.5 60363 1ew6A 137 2.36e+01 1ewaA a.1.1.2 15637 1r89A 437 2.38e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1e2kA 331 2.38e+01 1qhiA c.37.1.1 31854 1dyoA 160 2.43e+01 1dyoA b.18.1.7 23771 1rwiA 270 2.62e+01 b.68.9.1 97987 1fxxA 482 2.72e+01 1fxxA c.55.3.5 33726 1h16A 759 2.83e+01 c.7.1.1 76462 1uebA 184 3.14e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1xd3A 230 3.16e+01 1e2wA 251 3.47e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1c1lA 136 3.50e+01 1c1lA b.29.1.3 24219 1twdA 256 3.51e+01 c.1.30.1 107397 1v2zA 111 3.60e+01 a.186.1.1 108300 1sqgA 429 3.61e+01 a.79.1.3,c.66.1.38 105912,105913 1i71A 83 3.63e+01 5hpgA g.14.1.1 61864 1kjwA 295 3.66e+01 b.34.2.1,c.37.1.1 68643,68644 1evhA 112 3.70e+01 1evhA b.55.1.4 26997 1c75A 71 3.80e+01 451c a.3.1.1 15796 1wer 334 3.82e+01 1wer a.116.1.2 19108 1f3vA 179 3.92e+01 1f3vA d.58.22.1 39382 1dgnA 89 3.92e+01 1dgnA a.77.1.3 18436 1qksA 567 3.96e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1ewnA 219 4.02e+01 1bnkA b.46.1.2 25762 1tzpA 255 4.06e+01 d.65.1.3 107520 1hy7A 173 4.14e+01 d.92.1.11 65957 1kid 203 4.18e+01 1derA c.8.5.1 30771 1efdN 266 4.21e+01 1efdN c.92.2.1 35597 1io0A 185 4.21e+01 c.10.1.1 76753 1gwiA 411 4.25e+01 a.104.1.1 76364 1hp1A 516 4.28e+01 d.114.1.1,d.159.1.2 70976,70977 1fepA 724 4.38e+01 1fepA f.4.3.3 43808 1km4A 247 4.46e+01 c.1.2.3 72740 1dtdA 303 4.48e+01 1aye c.56.5.1 33823 1gx5A 536 4.49e+01 e.8.1.4 70682 1gr0A 367 4.54e+01 c.2.1.3,d.81.1.3 70379,70380 1jdpA 441 4.60e+01 c.93.1.1 62906 1tqhA 247 4.65e+01 c.69.1.29 107225 1c0pA 363 4.86e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1gvzA 237 4.96e+01 b.47.1.2 76360 1ixh 321 5.04e+01 1ixh c.94.1.1 35761 1uasA 362 5.08e+01 b.71.1.1,c.1.8.1 88388,88389 1whzA 70 5.10e+01 1cruA 454 5.16e+01 1c9uA b.68.2.1 27617 1kyfA 247 5.21e+01 b.1.10.1,d.105.1.1 73220,73221 2gnxA 365 5.28e+01 1qf8A 182 5.34e+01 1qf8A g.41.4.1 45212 1ve1A 304 5.43e+01 1bli 483 5.50e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1fkmA 396 5.63e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1floA 422 5.66e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1i39A 225 5.70e+01 1ekeA c.55.3.1 61585 1f60B 94 5.73e+01 1b64 d.58.12.1 39307 1gsoA 431 5.74e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1gpqA 135 5.89e+01 d.233.1.1 83295 1aj8A 371 6.00e+01 1aj8A a.103.1.1 18900 1g7sA 594 6.02e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1g8sA 230 6.02e+01 c.66.1.3 90507 1gvnB 287 6.04e+01 c.37.1.21 76354 1dusA 194 6.07e+01 1dusA c.66.1.4 34182 1ceo 343 6.10e+01 1ceo c.1.8.3 28808 1n93X 375 6.13e+01 a.206.1.1 91707 1fjgI 128 6.15e+01 1fjfI d.14.1.1 37559 1y8aA 332 6.16e+01 1e43A 483 6.37e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1b35B 255 6.51e+01 1b35B b.121.4.1 23334 1qz5A 375 6.65e+01 c.55.1.1,c.55.1.1 96614,96615 1ayl 541 6.72e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1cnzA 363 6.95e+01 1cnzA c.77.1.1 35061 1fh9A 312 6.99e+01 1taxA c.1.8.3 28913 1jfzA 154 7.10e+01 a.149.1.1 66655 2sli 679 7.10e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1ysqA 193 7.15e+01 1jhfA 202 7.37e+01 a.4.5.2,b.87.1.1 63057,63058 1xe0A 114 7.40e+01 1d2nA 272 7.41e+01 1d2nA c.37.1.20 32428 1ug6A 431 7.42e+01 c.1.8.4 88490 1qreA 247 7.60e+01 1qreA b.81.1.5 28066 1im8A 244 7.71e+01 c.66.1.14 66212 1x6iA 91 7.83e+01 1gvhA 396 7.84e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1fjlA 81 7.85e+01 2hddA a.4.1.1 16017 1ia9A 280 7.85e+01 1ia9A d.144.1.5 62113 1u7lA 392 7.89e+01 1tca 317 7.90e+01 1tca c.69.1.17 34726 1gp6A 356 7.90e+01 b.82.2.1 65441 1wouA 123 8.11e+01 c.47.1.16 109471 1cdq 77 8.11e+01 1cds g.7.1.3 44459 1jb3A 131 8.22e+01 1jc7A b.40.3.2 62833 1fzvA 132 8.28e+01 1vpfA g.17.1.1 60159 1q7zA 566 8.33e+01 c.1.21.2,c.1.26.1 96090,96091 1dq3A 454 8.36e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1alvA 173 8.39e+01 1alvA a.39.1.8 17370 1n8kA 374 8.45e+01 b.35.1.2,c.2.1.1 80298,80299 1s1fA 406 8.46e+01 1vcaA 202 8.67e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1i9zA 347 8.73e+01 1i9yA d.151.1.2 62102 1g79A 218 8.74e+01 1ci0A b.45.1.1 25752 1hrnA 337 8.74e+01 1smrA b.50.1.2 26869 1rylA 167 8.82e+01 d.276.1.1 105124 1jtvA 327 8.82e+01 c.2.1.2 84230 1d5tA 433 8.82e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1dnlA 199 8.83e+01 1ci0A b.45.1.1 25753 1shuX 182 8.85e+01 c.62.1.1 98882 1qxyA 252 8.93e+01 d.127.1.1 96565