# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o6lA 337 2.90e-45 d.144.1.7 81092 1xh9A 350 1.67e-44 1apmE 350 6.50e-44 1cdkA d.144.1.7 41628 1xjdA 345 2.84e-43 1rdqE 350 3.05e-43 d.144.1.7 97314 2bdwA 362 9.30e-43 2bfxA 284 6.82e-42 1mq4A 272 8.37e-42 d.144.1.7 91391 1zrzA 364 4.51e-41 1h1wA 289 1.71e-40 d.144.1.7 83460 1uu3A 310 2.46e-40 d.144.1.7 99999 1phk 298 2.66e-40 1cdkA d.144.1.7 41635 1yhvA 297 3.49e-40 1f3mC 297 1.32e-39 1hcl d.144.1.7 41677 1jksA 294 3.94e-39 d.144.1.7 71710 2f57A 317 4.50e-39 1vzoA 355 1.07e-38 d.144.1.7 108971 2eueA 279 1.40e-38 2c30A 321 3.32e-38 1p4fA 293 6.22e-38 d.144.1.7 104063 1ia8A 289 6.67e-36 1ia8A d.144.1.7 62112 1omwA 689 1.01e-35 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2bvaA 292 7.05e-35 1gz8A 299 2.33e-34 d.144.1.7 83405 1hcl 298 2.48e-34 1hcl d.144.1.7 41593 2ac5A 316 4.49e-34 2ac3A 316 1.59e-33 1tkiA 321 3.75e-33 1tkiA d.144.1.7 41638 1xwsA 313 9.85e-33 2bikB 313 1.09e-32 1s9jA 341 2.92e-32 1t4hA 290 1.44e-31 d.144.1.7 106420 1zy4A 303 7.19e-31 1pmnA 364 8.50e-31 d.144.1.7 94907 2b9hA 353 1.05e-30 1tvoA 368 1.07e-30 2evaA 307 1.50e-30 3erk 364 2.23e-30 1hcl d.144.1.7 41654 1blxA 326 2.69e-30 1hcl d.144.1.7 41596 1o6yA 299 4.30e-30 d.144.1.7 81106 1pme 380 5.72e-30 1hcl d.144.1.7 41653 2a19B 284 6.56e-30 1wbsA 360 6.79e-30 1r3cA 366 1.58e-29 d.144.1.7 96906 1ymiA 334 2.01e-29 1zz2A 360 2.35e-29 1j1bA 420 3.61e-29 d.144.1.7 90758 1zzlA 351 4.94e-29 1ywrA 360 5.58e-29 1opjA 293 3.01e-28 d.144.1.7 87230 2gfsA 372 3.89e-28 1m2rA 327 4.90e-28 d.144.1.7 84760 1om1A 332 9.21e-28 d.144.1.7 93347 1qpcA 279 7.26e-27 1fgkA d.144.1.7 41685 1mp8A 281 9.63e-27 d.144.1.7 91384 2b7aA 293 1.23e-26 1ir3A 306 2.82e-26 1fmk d.144.1.7 41702 1x8bA 289 2.87e-26 1fvrA 327 3.85e-26 d.144.1.7 60047 1t46A 313 4.64e-26 d.144.1.7 106397 1z57A 339 5.52e-26 1xbbA 291 7.78e-26 1jpaA 312 9.78e-26 d.144.1.7 67011 1u59A 287 1.14e-25 d.144.1.7 107681 1fgkA 310 1.20e-25 1fgkA d.144.1.7 41693 1q8yA 373 9.17e-25 d.144.1.7 96234 1r0pA 312 9.56e-25 d.144.1.7 96734 1howA 373 1.79e-24 1hcl d.144.1.7 41679 1p4oA 322 2.08e-24 d.144.1.7 87775 2eu9A 355 3.66e-24 1u46A 291 6.14e-24 d.144.1.7 107656 1ywnA 316 2.19e-23 1vjyA 303 9.48e-22 d.144.1.7 108633 1py5A 326 1.09e-21 d.144.1.7 104389 1wbpA 397 1.01e-20 1ckiA 317 1.10e-19 1csn d.144.1.7 41660 1csn 298 1.29e-18 1csn d.144.1.7 41664 1tqmA 282 2.14e-05 a.4.5.56,d.144.1.9 107236,107237 1zarA 282 2.18e-05 1zthA 258 2.46e-04 1e7uA 961 4.00e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1e8yA 966 7.09e-02 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1oo0A 147 1.91e-01 d.232.1.1 87182 1e17A 150 1.26e+00 2hfh a.4.5.14 16143 1k9sA 237 2.06e+00 c.56.2.1 68359 1ecpA 238 2.57e+00 1ecpA c.56.2.1 33775 1g8iA 190 3.11e+00 1rec a.39.1.5 60363 1ifqA 138 4.02e+00 1ifqA d.110.4.1 62350 1gw5S 142 4.37e+00 d.110.4.2 70633 1p6xA 334 4.56e+00 c.37.1.1 94195 2gdnA 267 4.71e+00 1xhkA 187 4.78e+00 1jb3A 131 4.79e+00 1jc7A b.40.3.2 62833 1e4fT 419 5.10e+00 1e4fT c.55.1.1,c.55.1.1 33453,33454 1ugmA 125 5.60e+00 d.15.1.3 107827 1j7lA 264 5.62e+00 d.144.1.6 62697 1e2kA 331 5.76e+00 1qhiA c.37.1.1 31854 1f20A 435 5.81e+00 b.43.4.1,c.25.1.4 64932,64933 1w1oA 534 6.15e+00 d.58.32.4,d.145.1.1 109071,109072 1jl2A 156 6.36e+00 c.55.3.1 66822 1qhiA 366 6.68e+00 1qhiA c.37.1.1 31860 1k3eA 156 6.79e+00 d.198.1.1 68103 1t17A 148 7.04e+00 1nd4A 264 7.74e+00 d.144.1.6 91815 1xfoA 357 7.90e+00 2av5A 120 8.43e+00 1y0yA 353 8.74e+00 2bfgA 503 8.97e+00 1bjt 793 9.65e+00 1bjt e.11.1.1 43249 1y63A 184 9.79e+00 1txqA 93 9.81e+00 1wchA 315 9.97e+00 1yiiA 320 1.03e+01 2be4A 272 1.06e+01 1f3vA 179 1.08e+01 1f3vA d.58.22.1 39382 2bs9A 503 1.15e+01 2a7kA 250 1.22e+01 1o1zA 234 1.28e+01 c.1.18.3 86555 1htjF 210 1.28e+01 1htjF a.91.1.1 61254 2coeA 120 1.30e+01 1kfuL 699 1.37e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1souA 194 1.37e+01 c.124.1.6 105858 2bkkA 264 1.38e+01 1x3mA 415 1.51e+01 1bif 469 1.52e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1iujA 106 1.55e+01 d.58.4.5 90701 1kutA 230 1.58e+01 d.143.1.1 73017 1exmA 405 1.62e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1uebA 184 1.71e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2c78A 405 1.75e+01 1c17M 177 1.76e+01 1c17M f.18.1.1 43648 1zuwA 272 1.81e+01 1ha3A 405 1.85e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 2fb0A 94 1.90e+01 1z98A 281 1.97e+01 1hy7A 173 1.98e+01 d.92.1.11 65957 1bcpA 235 1.99e+01 1bcpA d.166.1.1 42255 1i2sA 282 2.10e+01 e.3.1.1 71104 1a0p 290 2.10e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 2cwkA 160 2.15e+01 1f4qA 165 2.20e+01 1alvA a.39.1.8 17360 1xwyA 264 2.23e+01 2c3zA 222 2.24e+01 1dqaA 467 2.25e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1zkoA 136 2.42e+01 1cjaA 342 2.42e+01 1cjaA d.144.1.3 41708 1je0A 236 2.43e+01 c.56.2.1 66581 1kinA 366 2.44e+01 1t71A 281 2.46e+01 2atvA 196 2.51e+01 1kwiA 101 2.63e+01 d.17.1.3 77564 1bupA 386 2.64e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1szhA 161 2.64e+01 a.226.1.1 106157 1k94A 165 2.68e+01 a.39.1.8 68333 1kay 381 2.68e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1sxrA 183 2.70e+01 d.118.1.1 106101 1bw3 125 2.82e+01 1bw4 b.52.1.2 26899 1xrxA 50 2.84e+01 1jysA 242 2.85e+01 c.56.2.1 77216 1pmzA 86 2.86e+01 a.39.1.10 104195 1ezvC 385 2.88e+01 1be3C f.32.1.1,f.21.1.2 75833,75834 1kb9C 385 2.88e+01 f.32.1.1,f.21.1.2 77315,77316 1tllA 688 2.89e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1hfs 160 2.89e+01 1hfc d.92.1.11 40370 1ia9A 280 2.89e+01 1ia9A d.144.1.5 62113 1yixA 265 2.90e+01 2bbeA 108 2.98e+01 1srvA 145 3.09e+01 1derA c.8.5.1 30817 1fdr 248 3.13e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 2cxxA 190 3.14e+01 2fnuA 375 3.14e+01 1va0A 239 3.17e+01 1reoA 486 3.19e+01 c.3.1.2,d.16.1.5 97325,97326 1hzoA 271 3.20e+01 e.3.1.1 71092 1dzkA 157 3.27e+01 1obpA b.60.1.1 27096 1inlA 296 3.28e+01 c.66.1.17 66220 2arcA 164 3.28e+01 2arcA b.82.4.1 28148 2bgiA 272 3.28e+01 1zdzA 302 3.29e+01 1jqbA 351 3.32e+01 b.35.1.2,c.2.1.1 77151,77152 1ki9A 192 3.38e+01 c.37.1.1 84404 1rsgA 516 3.43e+01 1rm6A 769 3.60e+01 1p4wA 99 3.62e+01 a.4.6.2 87783 1vqtA 213 3.64e+01 1qksA 567 3.67e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1zuoA 186 3.71e+01 1pixA 587 3.80e+01 c.14.1.4 94708 2b06A 155 3.82e+01 1kevA 351 3.85e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 2gfoA 396 3.87e+01 1e8aA 91 3.96e+01 1b4cA a.39.1.2 17188 2cwoA 197 4.00e+01 1jyoA 130 4.01e+01 d.198.1.1 67483 1fepA 724 4.05e+01 1fepA f.4.3.3 43808 1yz4A 160 4.05e+01 1ycqA 107 4.07e+01 1ycqA a.42.1.1 17419 1l2uA 245 4.14e+01 c.1.2.3 73516 2sqcA 631 4.21e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1kyqA 274 4.25e+01 c.2.1.11,e.37.1.1 73281,73282 1lhpA 312 4.27e+01 c.72.1.5 77960 1vyqA 173 4.38e+01 1p1lA 102 4.43e+01 d.58.5.2 87695 2a65A 519 4.46e+01 2dg5A 366 4.48e+01 1g0sA 209 4.54e+01 1g0sA d.113.1.1 60187 1f8rA 498 4.56e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1ex2A 189 4.64e+01 1ex2A c.51.4.2 33225 1z5rA 306 4.68e+01 1gwiA 411 4.68e+01 a.104.1.1 76364 1odkA 235 4.78e+01 c.56.2.1 86863 4ubpC 570 4.80e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1i76A 163 4.83e+01 1hfc d.92.1.11 61877 1x7dA 350 4.84e+01 2btvA 901 4.84e+01 2btvA e.28.1.1 43376 1jl1A 155 4.94e+01 c.55.3.1 66821 1wdcC 156 4.95e+01 1wdcC a.39.1.5 17317 1zccA 248 4.95e+01 1s1hC 192 5.07e+01 i.1.1.1 105156 1nf2A 268 5.08e+01 c.108.1.10 91849 1dv1A 449 5.13e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 351c 82 5.14e+01 451c a.3.1.1 15905 451c 82 5.14e+01 451c a.3.1.1 15904 1a3c 181 5.18e+01 1a3c c.61.1.1 34095 1z6gA 218 5.20e+01 2rn2 155 5.22e+01 2rn2 c.55.3.1 33551 1viuA 203 5.25e+01 d.113.1.1 100771 1hzdA 272 5.26e+01 c.14.1.3 65969 1a8q 274 5.27e+01 1brt c.69.1.12 34702 1yqtA 538 5.30e+01 2f8lA 344 5.31e+01 1kcfA 258 5.36e+01 a.140.2.1,c.55.3.7 68434,68435 1jfrA 262 5.37e+01 1jfrA c.69.1.16 34724 2c6yA 111 5.38e+01 1oygA 447 5.42e+01 b.67.2.2 93726 1a8vA 121 5.48e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1cz4A 185 5.48e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1f21A 155 5.49e+01 2rn2 c.55.3.1 33550 1ej6D 418 5.53e+01 i.7.1.1 45970 1rkbA 173 5.58e+01 1f0lA 535 5.58e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1vjhA 122 5.61e+01 d.129.3.1 100811 1t6cA 315 5.65e+01 c.55.1.8,c.55.1.8 106558,106559 1z7mA 344 5.67e+01 1z5oA 242 5.71e+01 2a1xA 308 5.72e+01 1g7sA 594 5.73e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1nw1A 429 5.75e+01 d.144.1.8 86286 1yy5B 513 5.91e+01 1tqzA 133 5.92e+01 1twfC 318 5.96e+01 1w6kA 732 6.00e+01 1cliA 345 6.10e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1b8aA 438 6.22e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1usyA 275 6.30e+01 1v8yA 170 6.31e+01 1c3pA 375 6.41e+01 1c3pA c.42.1.2 32606 1zu4A 320 6.58e+01 2f0aA 98 6.66e+01 1o6dA 163 6.68e+01 c.116.1.3 92567 1dk8A 147 6.70e+01 1agrE a.91.1.1 18548 1ibrB 462 6.71e+01 1qgrA a.118.1.1 19120 1c93A 265 6.77e+01 2ebn c.1.8.5 28998 1hjrA 158 6.79e+01 1hjrA c.55.3.6 33727 1eudA 311 6.84e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1t2bA 397 6.91e+01 1x92A 199 6.91e+01 2a97A 439 6.96e+01 2fa1A 160 6.97e+01 1eg7A 557 7.01e+01 1eg7A c.37.1.10 32241 1p5hA 428 7.09e+01 c.123.1.1 87802 1xa1A 255 7.20e+01 e.3.1.1 109529 1edt 271 7.21e+01 2ebn c.1.8.5 28993 1dusA 194 7.27e+01 1dusA c.66.1.4 34182 1ignA 246 7.31e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1hcnB 145 7.39e+01 1hcnB g.17.1.4 44810 1ezm 301 7.47e+01 1hyt d.92.1.2 58980 1rro 108 7.49e+01 1a75A a.39.1.4 17195 1oaa 259 7.51e+01 1oaa c.2.1.2 29829 1bza 262 7.56e+01 1btl e.3.1.1 42701 1m45A 148 7.57e+01 a.39.1.5 78598 1x7vA 99 7.57e+01 d.58.4.11 109501 1igs 248 7.60e+01 1a53 c.1.2.4 28565 2absA 383 7.62e+01 1x9gA 200 7.66e+01 c.33.1.3 109527 1evuA 731 7.67e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1khtA 192 7.68e+01 c.37.1.1 84401 1q52A 314 7.68e+01 c.14.1.3 95846 1wdtA 665 7.73e+01 1u4gA 301 7.74e+01 d.92.1.2 107670 1gvnB 287 7.74e+01 c.37.1.21 76354 1zoyC 140 7.80e+01 1ukuA 102 7.84e+01 d.58.5.2 99533 2cqeA 98 7.88e+01 1u7kA 131 7.90e+01 1n3bA 216 7.95e+01 c.37.1.1 79959 1w6uA 302 7.95e+01 1z5nA 242 7.96e+01 2b0jA 358 8.05e+01 1xo5A 183 8.06e+01 1dqnA 230 8.17e+01 1dqnA c.61.1.1 34067 1oz9A 150 8.20e+01 d.92.1.15 93808 1quqA 129 8.24e+01 1quqA b.40.4.3 25303 1x8qA 184 8.25e+01 1o7fA 469 8.33e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1vk0A 206 8.34e+01 c.55.3.5 100839 1liiA 363 8.37e+01 c.72.1.1 73921 1grj 158 8.54e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2bo4A 397 8.55e+01 1s2xA 206 8.57e+01 a.47.3.1 105229 1yrlA 491 8.62e+01 1vdxA 184 8.69e+01 1mxtA 504 8.75e+01 c.3.1.2,d.16.1.1 79671,79672 1n4wA 504 8.75e+01 c.3.1.2,d.16.1.1 91676,91677 1fqiA 147 8.75e+01 1agrE a.91.1.1 18542 1l6oA 95 8.78e+01 b.36.1.1 84534 1xkzA 255 8.78e+01 2aq5A 402 8.79e+01 2fokA 579 8.79e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1iysA 262 8.81e+01 e.3.1.1 90723 1b8oA 284 8.98e+01 1b8oA c.56.2.1 33762 1d7oA 297 8.98e+01 1enp c.2.1.2 29907 1f1zA 273 8.98e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 1vhwA 253 8.99e+01 c.56.2.1 100706