# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o6lA 337 6.83e-45 d.144.1.7 81092 1xjdA 345 1.95e-43 1mq4A 272 3.68e-43 d.144.1.7 91391 2bdwA 362 4.33e-43 1apmE 350 6.17e-43 1cdkA d.144.1.7 41628 1xh9A 350 6.90e-43 2bfxA 284 8.59e-43 1rdqE 350 4.97e-42 d.144.1.7 97314 1phk 298 1.34e-40 1cdkA d.144.1.7 41635 1uu3A 310 1.38e-40 d.144.1.7 99999 1h1wA 289 1.57e-40 d.144.1.7 83460 1jksA 294 2.85e-40 d.144.1.7 71710 1zrzA 364 6.63e-40 1yhvA 297 8.52e-40 1vzoA 355 4.04e-39 d.144.1.7 108971 1f3mC 297 4.59e-39 1hcl d.144.1.7 41677 2eueA 279 7.20e-39 1p4fA 293 9.44e-39 d.144.1.7 104063 2f57A 317 1.25e-38 2c30A 321 1.20e-37 1ia8A 289 1.40e-37 1ia8A d.144.1.7 62112 2bvaA 292 2.40e-36 1hcl 298 1.87e-34 1hcl d.144.1.7 41593 1gz8A 299 2.75e-34 d.144.1.7 83405 1omwA 689 3.43e-34 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1tkiA 321 3.59e-34 1tkiA d.144.1.7 41638 1xwsA 313 1.13e-33 2bikB 313 1.95e-33 2ac3A 316 2.55e-33 2ac5A 316 5.13e-33 1s9jA 341 2.54e-32 1t4hA 290 2.66e-32 d.144.1.7 106420 1zy4A 303 1.50e-31 2evaA 307 3.04e-31 1o6yA 299 5.49e-31 d.144.1.7 81106 1blxA 326 1.29e-30 1hcl d.144.1.7 41596 2a19B 284 1.48e-30 1opjA 293 3.43e-30 d.144.1.7 87230 2b7aA 293 5.37e-29 1tvoA 368 9.93e-29 3erk 364 1.45e-28 1hcl d.144.1.7 41654 2b9hA 353 2.02e-28 1pmnA 364 2.12e-28 d.144.1.7 94907 1pme 380 2.93e-28 1hcl d.144.1.7 41653 1mp8A 281 7.41e-28 d.144.1.7 91384 1ymiA 334 8.23e-28 1j1bA 420 8.26e-28 d.144.1.7 90758 1qpcA 279 1.11e-27 1fgkA d.144.1.7 41685 1xbbA 291 2.10e-27 1om1A 332 2.36e-27 d.144.1.7 93347 1r3cA 366 2.94e-27 d.144.1.7 96906 1m2rA 327 3.09e-27 d.144.1.7 84760 1ywrA 360 3.16e-27 1wbsA 360 3.16e-27 1fgkA 310 4.23e-27 1fgkA d.144.1.7 41693 1zzlA 351 4.80e-27 1fvrA 327 5.26e-27 d.144.1.7 60047 1u59A 287 5.70e-27 d.144.1.7 107681 1x8bA 289 7.35e-27 1zz2A 360 8.05e-27 2gfsA 372 9.33e-27 1t46A 313 1.27e-26 d.144.1.7 106397 1ir3A 306 3.77e-26 1fmk d.144.1.7 41702 1jpaA 312 4.66e-26 d.144.1.7 67011 1u46A 291 7.08e-26 d.144.1.7 107656 1z57A 339 7.18e-26 1p4oA 322 3.79e-25 d.144.1.7 87775 1r0pA 312 4.12e-25 d.144.1.7 96734 1ywnA 316 1.93e-24 2eu9A 355 2.75e-23 1py5A 326 2.12e-22 d.144.1.7 104389 1vjyA 303 3.38e-22 d.144.1.7 108633 1ckiA 317 3.22e-21 1csn d.144.1.7 41660 1q8yA 373 7.94e-21 d.144.1.7 96234 1howA 373 9.03e-21 1hcl d.144.1.7 41679 1wbpA 397 3.30e-20 1csn 298 1.27e-19 1csn d.144.1.7 41664 1tqmA 282 2.38e-06 a.4.5.56,d.144.1.9 107236,107237 1zarA 282 5.47e-06 1zthA 258 7.67e-04 1e17A 150 7.08e-02 2hfh a.4.5.14 16143 1esc 306 2.40e-01 1esc c.23.10.1 31334 1j7lA 264 4.01e-01 d.144.1.6 62697 2a65A 519 9.35e-01 2bkkA 264 9.35e-01 1enp 312 1.32e+00 1enp c.2.1.2 29906 1d7oA 297 1.90e+00 1enp c.2.1.2 29907 1txqA 93 2.58e+00 1o1zA 234 2.59e+00 c.1.18.3 86555 1nd4A 264 2.79e+00 d.144.1.6 91815 1w7jB 151 2.95e+00 1a3c 181 3.85e+00 1a3c c.61.1.1 34095 1sheA 103 4.47e+00 d.274.1.1 105551 1vdmA 153 4.54e+00 1z7mA 344 5.30e+00 1dq3A 454 5.60e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1cpt 412 5.84e+00 1cpt a.104.1.1 18968 1ha3A 405 6.76e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1nw1A 429 7.69e+00 d.144.1.8 86286 1gwiA 411 8.14e+00 a.104.1.1 76364 1dqnA 230 8.27e+00 1dqnA c.61.1.1 34067 2fug5 207 8.40e+00 1nlnA 204 8.55e+00 d.3.1.7 91962 1dqpA 230 9.15e+00 1dqnA c.61.1.1 34069 1fcjA 322 1.01e+01 1oasA c.79.1.1 35289 1br1B 150 1.02e+01 1wdcC a.39.1.5 17309 1avpA 204 1.07e+01 1avpA d.3.1.7 37132 1nsf 273 1.15e+01 1d2nA c.37.1.20 32429 1pu1A 94 1.33e+01 d.266.1.1 104307 1xiuA 230 1.43e+01 1x92A 199 1.52e+01 1nc5A 373 1.63e+01 a.102.1.6 85548 1vcbC 160 1.66e+01 1vcbC b.3.3.1 22535 2cqeA 98 1.69e+01 2coeA 120 1.82e+01 1sefA 274 1.91e+01 b.82.1.11 105452 2c78A 405 1.93e+01 2ac4A 309 1.96e+01 1z5rA 306 2.02e+01 2fnaA 357 2.05e+01 1f2tB 148 2.07e+01 1f2tB 1zemA 262 2.15e+01 1ew6A 137 2.27e+01 1ewaA a.1.1.2 15637 1lm8V 160 2.33e+01 b.3.3.1 74035 1e8yA 966 2.37e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1r5pA 108 2.41e+01 c.47.1.15 97101 1opc 110 2.42e+01 1opc a.4.6.1 16231 1iu8A 206 2.43e+01 c.56.4.1 71436 1ycsB 239 2.57e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1bcpB 199 2.62e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1g8aA 227 2.65e+01 c.66.1.3 90506 1gpc 218 2.67e+01 1gpc b.40.4.7 25393 1h6zA 913 2.69e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1uuzA 137 2.70e+01 d.233.1.1 100024 1w1wA 430 2.72e+01 2ac2A 309 2.73e+01 1nonA 179 2.83e+01 c.61.1.1 103868 1wwjA 105 2.84e+01 1tuzA 118 2.89e+01 1szhA 161 2.91e+01 a.226.1.1 106157 1u7kA 131 2.92e+01 1r5qA 102 3.05e+01 a.186.1.1 97103 1dozA 309 3.17e+01 1ak1 c.92.1.1 35592 1kutA 230 3.17e+01 d.143.1.1 73017 1aj2 282 3.23e+01 1aj2 c.1.21.1 29665 1w2fA 276 3.26e+01 d.143.1.3 109125 1e4mM 501 3.29e+01 1e70M c.1.8.4 59226 2cwoA 197 3.38e+01 1y63A 184 3.50e+01 2c6yA 111 3.54e+01 1ejdA 419 3.55e+01 1uae d.68.2.2 39576 1yiiA 320 3.61e+01 1zkoA 136 3.63e+01 1z2mA 155 3.73e+01 1y7lA 316 3.80e+01 1hy7A 173 3.90e+01 d.92.1.11 65957 1gveA 327 3.91e+01 c.1.7.1 70597 1o58A 303 3.96e+01 c.79.1.1 92491 1io7A 368 4.04e+01 1f4tA a.104.1.1 18971 1hzpA 335 4.07e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1d2nA 272 4.13e+01 1d2nA c.37.1.20 32428 1p4wA 99 4.16e+01 a.4.6.2 87783 1ji7A 89 4.20e+01 a.60.1.1 71682 2b06A 155 4.21e+01 1u6eA 335 4.26e+01 1g8iA 190 4.31e+01 1rec a.39.1.5 60363 1uebA 184 4.38e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1wlzA 105 4.44e+01 1uh5A 329 4.62e+01 c.2.1.2 107840 1vchA 175 4.72e+01 1b74A 254 4.73e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1qusA 322 4.77e+01 1ltm d.2.1.6 36991 1xl7A 612 4.81e+01 1dqwA 267 4.82e+01 1dqwA c.1.2.3 28551 1zxkA 98 4.89e+01 1xznA 179 4.91e+01 1r17A 343 5.28e+01 b.2.3.4,b.2.3.4 96796,96797 1wraA 308 5.36e+01 1m4zA 238 5.36e+01 b.34.12.1 78630 1exmA 405 5.42e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1ek8A 185 5.53e+01 1ek8A d.67.3.1 59444 2bb2 181 5.53e+01 2bb2 b.11.1.1,b.11.1.1 23604,23605 2sqcA 631 5.55e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1bw3 125 5.61e+01 1bw4 b.52.1.2 26899 1elrA 131 5.61e+01 1a17 a.118.8.1 19209 1rdfA 267 5.74e+01 c.108.1.3 104884 1z7gA 217 5.80e+01 1cnoA 87 5.83e+01 a.3.1.1 15814 1us8A 147 5.84e+01 c.37.1.12 99859 1ylkA 172 5.86e+01 1w2yA 229 5.92e+01 a.204.1.1 109140 1rqlA 267 5.96e+01 c.108.1.3 97750 1ki0A 253 5.97e+01 g.14.1.1,g.14.1.1,g.14.1.1 72493,72494,72495 1f1zA 273 6.04e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 1rkbA 173 6.04e+01 1z7wA 322 6.07e+01 1j5pA 253 6.16e+01 d.81.1.3,c.2.1.3 71577,83092 1yaxA 153 6.25e+01 1tib 269 6.31e+01 3tgl c.69.1.17 34738 1x3kA 152 6.53e+01 1yioA 208 6.55e+01 2ff4A 388 6.62e+01 2a1kA 233 6.62e+01 1fp2A 352 6.66e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1sd4A 126 6.67e+01 a.4.5.39 105428 2be4A 272 6.70e+01 2myr 501 6.70e+01 1iseA 185 6.86e+01 d.67.3.1 90691 1t0fA 276 6.88e+01 2f5xA 312 6.91e+01 1vsrA 136 7.02e+01 1vsrA c.52.1.15 33332 2vsgA 358 7.14e+01 2vsgA h.4.1.1 45780 1c1lA 136 7.32e+01 1c1lA b.29.1.3 24219 1swvA 267 7.43e+01 1e7uA 961 7.45e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1uqvA 85 7.49e+01 a.60.1.2 99798 1z7yA 322 7.54e+01 2a6aA 218 7.68e+01 1cei 94 7.75e+01 1cei a.28.2.1 16939 1d4fA 431 7.79e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 2ng1 293 7.81e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1k2yX 463 7.95e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1vjtA 483 7.96e+01 c.2.1.5,d.162.1.2 100833,100834 1d4aA 273 8.05e+01 1d4aA c.23.5.3 31219 1br9 194 8.07e+01 1br9 b.40.3.1 25235 1vfvA 366 8.17e+01 c.37.1.9 108592 1t07A 94 8.19e+01 d.279.1.1 106196 1rcqA 357 8.27e+01 b.49.2.2,c.1.6.1 104882,104883 1f0jA 377 8.27e+01 1f0jA a.211.1.2 19346 1e2tA 284 8.30e+01 1e2tA d.3.1.5 37121 1au1A 166 8.32e+01 1ifa a.26.1.3 16889 1dyoA 160 8.34e+01 1dyoA b.18.1.7 23771 1obbA 480 8.36e+01 c.2.1.5,d.162.1.2 86760,86761 1j7gA 144 8.43e+01 c.110.1.1 84130 1zj8A 566 8.48e+01 1fltX 95 8.50e+01 1fltX b.1.1.4 21765 1pm4A 119 8.51e+01 b.135.1.1 94891 1srvA 145 8.54e+01 1derA c.8.5.1 30817 1x6iA 91 8.81e+01 1gt6A 269 8.86e+01 c.69.1.17 76342 1k3eA 156 8.86e+01 d.198.1.1 68103 2bp1A 360 8.91e+01