PFRMAT RR TARGET T0292 AUTHOR 5370-1100-4902 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.3xnearNS_str2.miRvp_pplR.n28.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 SRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQML VSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGT KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK QNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSL GCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRML NLKDYHRPSVEEILENPLILEHHHHHH 20 32 0 8 0.534265656257 20 33 0 8 0.538880993934 20 34 0 8 0.526546376874 20 37 0 8 0.555912091595 20 82 0 8 0.484026531059 20 83 0 8 0.486233341831 23 37 0 8 0.512127098039 33 50 0 8 0.511433869523 33 53 0 8 0.542682714896 33 54 0 8 0.463972864041 33 56 0 8 0.544542410245 33 57 0 8 0.54943379645 33 65 0 8 0.514547732411 33 66 0 8 0.468484881664 33 80 0 8 0.549487068973 33 82 0 8 0.641432589474 33 83 0 8 0.644885872427 33 92 0 8 0.533795889463 33 96 0 8 0.506033979228 33 111 0 8 0.472033056543 33 118 0 8 0.506773551444 33 122 0 8 0.505213358001 33 125 0 8 0.524598866494 33 146 0 8 0.45811584579 33 155 0 8 0.458170112583 33 202 0 8 0.463155007624 33 207 0 8 0.462360602287 34 50 0 8 0.469152136914 34 56 0 8 0.503445476469 34 57 0 8 0.464606043202 34 65 0 8 0.488680023339 34 80 0 8 0.498005061668 34 82 0 8 0.571626163079 34 83 0 8 0.56890275381 34 92 0 8 0.503698754625 65 80 0 8 0.580030604085 65 81 0 8 0.522403791234 65 82 0 8 0.686156416496 65 83 0 8 0.666133911548 65 84 0 8 0.590657347054 65 92 0 8 0.470004239903 65 96 0 8 0.480746298743 65 135 0 8 0.587127808641 65 145 0 8 0.527806207036 65 146 0 8 0.501024137293 65 153 0 8 0.462149542567 65 155 0 8 0.475130383279 66 80 0 8 0.619819613511 66 81 0 8 0.584796570306 66 82 0 8 0.681493939827 66 83 0 8 0.694914900707 66 84 0 8 0.638191732443 66 86 0 8 0.485645658528 66 92 0 8 0.521347514418 66 96 0 8 0.482701245242 66 118 0 8 0.462756339263 66 135 0 8 0.519895133795 66 145 0 8 0.487840475763 66 146 0 8 0.490886834111 66 153 0 8 0.455543599811 68 80 0 8 0.506064372606 68 82 0 8 0.487528643806 68 83 0 8 0.60230264509 68 84 0 8 0.533374552235 68 92 0 8 0.484614214363 80 92 0 8 0.558815245876 80 96 0 8 0.529500651096 81 92 0 8 0.62653554077 81 93 0 8 0.510106691983 81 96 0 8 0.568799264258 81 115 0 8 0.464257208386 81 118 0 8 0.516401718281 81 122 0 8 0.506940715028 81 125 0 8 0.523240010381 82 91 0 8 0.463840951715 82 92 0 8 0.696674223095 82 93 0 8 0.597961530715 82 96 0 8 0.659728452946 82 106 0 8 0.46843979685 82 110 0 8 0.538188451135 82 111 0 8 0.599464852632 82 112 0 8 0.466614041931 82 114 0 8 0.612913047604 82 115 0 8 0.61143695978 82 118 0 8 0.630108653731 82 119 0 8 0.579567624509 82 122 0 8 0.632576062529 82 125 0 8 0.630843974234 82 126 0 8 0.512094089389 82 135 0 8 0.626056220738 82 136 0 8 0.535064744102 82 140 0 8 0.519532038639 82 145 0 8 0.628000734957 82 146 0 8 0.623861152867 82 147 0 8 0.487450685817 82 153 0 8 0.649058135428 82 155 0 8 0.646046044776 82 158 0 8 0.494394943627 82 160 0 8 0.528499388697 82 185 0 8 0.58325512066 82 186 0 8 0.592405775805 82 199 0 8 0.527899731546 82 200 0 8 0.56476317172 82 202 0 8 0.578881325373 82 203 0 8 0.578205919874 82 204 0 8 0.584491548468 82 205 0 8 0.482155539318 82 207 0 8 0.590739049332 82 208 0 8 0.55294902231 82 222 0 8 0.541094225118 82 226 0 8 0.540454954842 82 242 0 8 0.50299464135 82 245 0 8 0.565890663158 82 246 0 8 0.536503102224 82 249 0 8 0.547816248933 82 260 0 8 0.497483308666 82 263 0 8 0.542266220625 83 92 0 8 0.693536855617 83 93 0 8 0.613147260801 83 96 0 8 0.646220342969 83 106 0 8 0.465552880559 83 108 0 8 0.497290817267 83 111 0 8 0.613000196701 83 114 0 8 0.613713729929 83 115 0 8 0.610391170621 83 118 0 8 0.626121582561 83 119 0 8 0.602765624666 83 122 0 8 0.628839545012 83 125 0 8 0.629694695522 83 126 0 8 0.510972903278 83 135 0 8 0.632292827965 83 136 0 8 0.53256093552 83 140 0 8 0.536677448663 83 145 0 8 0.658274152396 83 146 0 8 0.632249253417 83 147 0 8 0.505593275235 83 153 0 8 0.649472093637 83 155 0 8 0.647696430793 83 158 0 8 0.483390873609 83 160 0 8 0.530188331315 83 175 0 8 0.465942754765 83 181 0 8 0.452515512772 83 185 0 8 0.596594379262 83 186 0 8 0.596741443362 83 198 0 8 0.459374835383 83 200 0 8 0.589268408327 83 202 0 8 0.590129005656 83 203 0 8 0.585553678083 83 204 0 8 0.589224833778 83 205 0 8 0.506109962674 83 207 0 8 0.596659741084 83 208 0 8 0.567824283739 83 222 0 8 0.566996367321 83 226 0 8 0.564659682168 83 242 0 8 0.522392788351 83 245 0 8 0.586327126316 83 246 0 8 0.540779432936 83 249 0 8 0.57050411846 83 260 0 8 0.508987202532 83 263 0 8 0.575221063315 84 96 0 8 0.620462338099 84 111 0 8 0.573799443676 84 114 0 8 0.576185150196 84 115 0 8 0.569643521131 84 118 0 8 0.584845591673 84 119 0 8 0.546179329589 84 122 0 8 0.598849362137 84 125 0 8 0.590036409741 84 135 0 8 0.494574846679 84 145 0 8 0.470856342892 84 146 0 8 0.553145107777 84 153 0 8 0.484086498743 84 155 0 8 0.547026847001 84 160 0 8 0.489891370557 84 185 0 8 0.478863405897 84 186 0 8 0.530899801393 84 200 0 8 0.518393240196 84 202 0 8 0.545046077735 84 203 0 8 0.526579385525 84 204 0 8 0.5342608133 84 207 0 8 0.546310089418 84 208 0 8 0.473818415186 84 222 0 8 0.500720203505 84 226 0 8 0.470148511309 84 245 0 8 0.530430394752 84 246 0 8 0.46588705845 84 249 0 8 0.511901538927 84 263 0 8 0.502878133398 86 96 0 8 0.518833355536 87 96 0 8 0.490185212208 87 125 0 8 0.469341493134 92 118 0 8 0.460357064333 92 122 0 8 0.463747147395 92 125 0 8 0.467895057179 96 111 0 8 0.461361 96 114 0 8 0.455494759697 96 118 0 8 0.515240914072 96 122 0 8 0.500309892892 96 125 0 8 0.503551853294 111 122 0 8 0.475333264943 111 125 0 8 0.503480935411 114 125 0 8 0.455125745506 115 125 0 8 0.539026282633 122 146 0 8 0.453747368969 125 145 0 8 0.457790245033 125 146 0 8 0.46380284371 135 145 0 8 0.650724861901 135 146 0 8 0.6405883326 135 153 0 8 0.574349572349 135 155 0 8 0.589693260173 136 145 0 8 0.679522191516 136 146 0 8 0.663127267714 136 147 0 8 0.505750307692 136 153 0 8 0.584883719403 136 155 0 8 0.62295698099 136 158 0 8 0.465034025413 136 160 0 8 0.495234491203 137 146 0 8 0.498096241805 140 155 0 8 0.493039673968 145 155 0 8 0.673427201571 145 158 0 8 0.507472599156 145 160 0 8 0.557878393087 145 164 0 8 0.470937495557 145 175 0 8 0.481609833393 145 185 0 8 0.542953920467 145 186 0 8 0.506809010386 145 200 0 8 0.475044722132 145 202 0 8 0.497599816618 145 203 0 8 0.479462990305 145 204 0 8 0.471933869952 145 207 0 8 0.493015686894 145 208 0 8 0.462076257942 145 226 0 8 0.485891526032 145 245 0 8 0.466306246506 146 155 0 8 0.708575521603 146 158 0 8 0.56629372773 146 160 0 8 0.618659441163 146 164 0 8 0.471275631664 146 174 0 8 0.479242118336 146 175 0 8 0.529506152537 146 177 0 8 0.457974752129 146 178 0 8 0.479516961221 146 181 0 8 0.495480358707 146 182 0 8 0.466874935197 146 183 0 8 0.462014698856 146 185 0 8 0.598114041634 146 186 0 8 0.569948542969 146 197 0 8 0.485693632675 146 198 0 8 0.468723831179 146 199 0 8 0.459060087985 146 200 0 8 0.51705638985 146 202 0 8 0.562448273841 146 203 0 8 0.521314505767 146 204 0 8 0.534570762525 146 207 0 8 0.572769994973 146 208 0 8 0.495552319928 146 222 0 8 0.490862847038 146 226 0 8 0.523074967128 146 245 0 8 0.517634041234 146 246 0 8 0.487780508079 146 249 0 8 0.493807260323 146 263 0 8 0.464145815756 147 160 0 8 0.46607466709 155 185 0 8 0.477114115105 155 186 0 8 0.464834691233 186 202 0 8 0.479336796446 197 207 0 8 0.498916863031 198 207 0 8 0.452309298959 204 222 0 8 0.464515170267 204 226 0 8 0.474007771405 207 222 0 8 0.469111560582 207 226 0 8 0.469544374798 226 245 0 8 0.465294918679 226 246 0 8 0.502483019474 246 263 0 8 0.510663903927 249 263 0 8 0.469972680533 250 263 0 8 0.483336902693 END