/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0291.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0291.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0291/ -e s/START_COL/1/ \ -e s/REAL_PDB/2gsfA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175318606 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.82512 sec, elapsed time= 5.88072 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.9001 sec, elapsed time= 5.98006 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0291 numbered 1 through 310 Created new target T0291 from T0291.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2gsfA expands to /projects/compbio/data/pdb/2gsf.pdb.gz 2gsfA: Read 281 residues and 2233 atoms. # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.17176 sec, elapsed time= 8.29686 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 305 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.25 # GDT_score(maxd=8,maxw=2.9)= -88.8175 # GDT_score(maxd=8,maxw=3.2)= -86.5653 # GDT_score(maxd=8,maxw=3.5)= -83.9023 # GDT_score(maxd=10,maxw=3.8)= -85.4186 # GDT_score(maxd=10,maxw=4)= -83.5012 # GDT_score(maxd=10,maxw=4.2)= -81.5584 # GDT_score(maxd=12,maxw=4.3)= -84.1484 # GDT_score(maxd=12,maxw=4.5)= -82.283 # GDT_score(maxd=12,maxw=4.7)= -80.4358 # GDT_score(maxd=14,maxw=5.2)= -78.8065 # GDT_score(maxd=14,maxw=5.5)= -76.0815 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 3.3470000e+03 rmsd (weighted)= 2.7873013e+00 (unweighted)= 2.1411445e+01 superimposing iter= 1 total_weight= 1.3484416e+04 rmsd (weighted)= 9.4916780e-01 (unweighted)= 2.1313003e+01 superimposing iter= 2 total_weight= 4.8323404e+03 rmsd (weighted)= 6.3059651e-01 (unweighted)= 2.1307585e+01 superimposing iter= 3 total_weight= 2.7533988e+03 rmsd (weighted)= 5.6120680e-01 (unweighted)= 2.1304651e+01 superimposing iter= 4 total_weight= 2.4375549e+03 rmsd (weighted)= 5.3171442e-01 (unweighted)= 2.1299595e+01 superimposing iter= 5 total_weight= 2.3747615e+03 rmsd (weighted)= 5.1084865e-01 (unweighted)= 2.1293415e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1499358213.pdb -s /var/tmp/to_scwrl_1499358213.seq -o /var/tmp/from_scwrl_1499358213.pdb > /var/tmp/scwrl_1499358213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499358213.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.25 # GDT_score(maxd=8,maxw=2.9)= -88.8187 # GDT_score(maxd=8,maxw=3.2)= -86.5672 # GDT_score(maxd=8,maxw=3.5)= -83.8974 # GDT_score(maxd=10,maxw=3.8)= -85.4149 # GDT_score(maxd=10,maxw=4)= -83.5003 # GDT_score(maxd=10,maxw=4.2)= -81.5627 # GDT_score(maxd=12,maxw=4.3)= -84.1509 # GDT_score(maxd=12,maxw=4.5)= -82.2867 # GDT_score(maxd=12,maxw=4.7)= -80.4423 # GDT_score(maxd=14,maxw=5.2)= -78.8092 # GDT_score(maxd=14,maxw=5.5)= -76.0826 # command:# request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1538376444.pdb -s /var/tmp/to_scwrl_1538376444.seq -o /var/tmp/from_scwrl_1538376444.pdb > /var/tmp/scwrl_1538376444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1538376444.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -80.625 # GDT_score(maxd=8,maxw=2.9)= -86.099 # GDT_score(maxd=8,maxw=3.2)= -82.0938 # GDT_score(maxd=8,maxw=3.5)= -77.9127 # GDT_score(maxd=10,maxw=3.8)= -79.7959 # GDT_score(maxd=10,maxw=4)= -77.3093 # GDT_score(maxd=10,maxw=4.2)= -74.9282 # GDT_score(maxd=12,maxw=4.3)= -78.1582 # GDT_score(maxd=12,maxw=4.5)= -75.8717 # GDT_score(maxd=12,maxw=4.7)= -73.6734 # GDT_score(maxd=14,maxw=5.2)= -71.8615 # GDT_score(maxd=14,maxw=5.5)= -68.7821 # command:# request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_749834281.pdb -s /var/tmp/to_scwrl_749834281.seq -o /var/tmp/from_scwrl_749834281.pdb > /var/tmp/scwrl_749834281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749834281.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.907143 # GDT_score = -78.3929 # GDT_score(maxd=8,maxw=2.9)= -81.4001 # GDT_score(maxd=8,maxw=3.2)= -78.9697 # GDT_score(maxd=8,maxw=3.5)= -76.2675 # GDT_score(maxd=10,maxw=3.8)= -77.6017 # GDT_score(maxd=10,maxw=4)= -75.821 # GDT_score(maxd=10,maxw=4.2)= -73.9561 # GDT_score(maxd=12,maxw=4.3)= -76.3739 # GDT_score(maxd=12,maxw=4.5)= -74.5552 # GDT_score(maxd=12,maxw=4.7)= -72.6215 # GDT_score(maxd=14,maxw=5.2)= -70.7698 # GDT_score(maxd=14,maxw=5.5)= -67.8515 # command:# request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1503982744.pdb -s /var/tmp/to_scwrl_1503982744.seq -o /var/tmp/from_scwrl_1503982744.pdb > /var/tmp/scwrl_1503982744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503982744.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.882143 # GDT_score = -61.6071 # GDT_score(maxd=8,maxw=2.9)= -63.9013 # GDT_score(maxd=8,maxw=3.2)= -60.9875 # GDT_score(maxd=8,maxw=3.5)= -58.0489 # GDT_score(maxd=10,maxw=3.8)= -60.5885 # GDT_score(maxd=10,maxw=4)= -58.7121 # GDT_score(maxd=10,maxw=4.2)= -56.8788 # GDT_score(maxd=12,maxw=4.3)= -60.0809 # GDT_score(maxd=12,maxw=4.5)= -58.2856 # GDT_score(maxd=12,maxw=4.7)= -56.5004 # GDT_score(maxd=14,maxw=5.2)= -55.4155 # GDT_score(maxd=14,maxw=5.5)= -52.8748 # command:# request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1753954802.pdb -s /var/tmp/to_scwrl_1753954802.seq -o /var/tmp/from_scwrl_1753954802.pdb > /var/tmp/scwrl_1753954802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753954802.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0291.try1-opt2.pdb looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -80.7143 # GDT_score(maxd=8,maxw=2.9)= -86.0957 # GDT_score(maxd=8,maxw=3.2)= -82.0913 # GDT_score(maxd=8,maxw=3.5)= -77.9092 # GDT_score(maxd=10,maxw=3.8)= -79.7928 # GDT_score(maxd=10,maxw=4)= -77.3061 # GDT_score(maxd=10,maxw=4.2)= -74.9251 # GDT_score(maxd=12,maxw=4.3)= -78.1554 # GDT_score(maxd=12,maxw=4.5)= -75.8689 # GDT_score(maxd=12,maxw=4.7)= -73.6713 # GDT_score(maxd=14,maxw=5.2)= -71.8528 # GDT_score(maxd=14,maxw=5.5)= -68.7744 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 3.3470000e+03 rmsd (weighted)= 3.8951808e+00 (unweighted)= 2.1674500e+01 superimposing iter= 1 total_weight= 1.3842520e+04 rmsd (weighted)= 1.3186398e+00 (unweighted)= 2.1813253e+01 superimposing iter= 2 total_weight= 4.3724558e+03 rmsd (weighted)= 9.2486205e-01 (unweighted)= 2.1836160e+01 superimposing iter= 3 total_weight= 2.6373883e+03 rmsd (weighted)= 8.4284601e-01 (unweighted)= 2.1847439e+01 superimposing iter= 4 total_weight= 2.3247053e+03 rmsd (weighted)= 8.1955136e-01 (unweighted)= 2.1853698e+01 superimposing iter= 5 total_weight= 2.2515943e+03 rmsd (weighted)= 8.1011445e-01 (unweighted)= 2.1857369e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0291.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0291)D180.C and (T0291)P181.C only 0.0000000e+00 apart, marking (T0291)P181.C as missing WARNING: atoms too close: (T0291)P181.N and (T0291)E182.N only 0.0000000e+00 apart, marking (T0291)P181.N as missing WARNING: atoms too close: (T0291)P181.CA and (T0291)E182.CA only 0.0000000e+00 apart, marking (T0291)P181.CA as missing # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.914286 # GDT_score = -78.5714 # GDT_score(maxd=8,maxw=2.9)= -81.5919 # GDT_score(maxd=8,maxw=3.2)= -79.1467 # GDT_score(maxd=8,maxw=3.5)= -76.4299 # GDT_score(maxd=10,maxw=3.8)= -77.8029 # GDT_score(maxd=10,maxw=4)= -76.0129 # GDT_score(maxd=10,maxw=4.2)= -74.1431 # GDT_score(maxd=12,maxw=4.3)= -76.5962 # GDT_score(maxd=12,maxw=4.5)= -74.7714 # GDT_score(maxd=12,maxw=4.7)= -72.8306 # GDT_score(maxd=14,maxw=5.2)= -71.0002 # GDT_score(maxd=14,maxw=5.5)= -68.0703 # command:# ReadConformPDB reading from PDB file T0291.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0291)L46.C and (T0291)K51.C only 0.0000000e+00 apart, marking (T0291)K51.C as missing WARNING: atoms too close: (T0291)K47.N and (T0291)K52.N only 0.0000000e+00 apart, marking (T0291)K47.N as missing WARNING: atoms too close: (T0291)K47.CA and (T0291)K52.CA only 0.0000000e+00 apart, marking (T0291)K47.CA as missing WARNING: atoms too close: (T0291)K62.C and (T0291)Y65.C only 0.0000000e+00 apart, marking (T0291)Y65.C as missing WARNING: atoms too close: (T0291)V63.N and (T0291)T66.N only 0.0000000e+00 apart, marking (T0291)V63.N as missing WARNING: atoms too close: (T0291)V63.CA and (T0291)T66.CA only 0.0000000e+00 apart, marking (T0291)V63.CA as missing WARNING: atoms too close: (T0291)S225.C and (T0291)Y226.C only 0.0000000e+00 apart, marking (T0291)Y226.C as missing WARNING: atoms too close: (T0291)Y226.N and (T0291)G227.N only 0.0000000e+00 apart, marking (T0291)Y226.N as missing WARNING: atoms too close: (T0291)Y226.CA and (T0291)G227.CA only 0.0000000e+00 apart, marking (T0291)Y226.CA as missing # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.896429 # GDT_score = -61.9643 # GDT_score(maxd=8,maxw=2.9)= -64.1372 # GDT_score(maxd=8,maxw=3.2)= -61.1954 # GDT_score(maxd=8,maxw=3.5)= -58.2389 # GDT_score(maxd=10,maxw=3.8)= -60.884 # GDT_score(maxd=10,maxw=4)= -58.9932 # GDT_score(maxd=10,maxw=4.2)= -57.1447 # GDT_score(maxd=12,maxw=4.3)= -60.4311 # GDT_score(maxd=12,maxw=4.5)= -58.6197 # GDT_score(maxd=12,maxw=4.7)= -56.8193 # GDT_score(maxd=14,maxw=5.2)= -55.7671 # GDT_score(maxd=14,maxw=5.5)= -53.2064 # command:# ReadConformPDB reading from PDB file T0291.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0291.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0291)P49.C and (T0291)S50.C only 0.0000000e+00 apart, marking (T0291)S50.C as missing WARNING: atoms too close: (T0291)S50.N and (T0291)K51.N only 0.0000000e+00 apart, marking (T0291)S50.N as missing WARNING: atoms too close: (T0291)S50.CA and (T0291)K51.CA only 0.0000000e+00 apart, marking (T0291)S50.CA as missing WARNING: atoms too close: (T0291)K97.C and (T0291)S98.C only 0.0000000e+00 apart, marking (T0291)S98.C as missing WARNING: atoms too close: (T0291)S98.N and (T0291)K99.N only 0.0000000e+00 apart, marking (T0291)S98.N as missing WARNING: atoms too close: (T0291)S98.CA and (T0291)K99.CA only 0.0000000e+00 apart, marking (T0291)S98.CA as missing WARNING: atoms too close: (T0291)A122.C and (T0291)Q123.C only 0.0000000e+00 apart, marking (T0291)Q123.C as missing WARNING: atoms too close: (T0291)Q123.N and (T0291)F124.N only 0.0000000e+00 apart, marking (T0291)Q123.N as missing WARNING: atoms too close: (T0291)Q123.CA and (T0291)F124.CA only 0.0000000e+00 apart, marking (T0291)Q123.CA as missing # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0291.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0291)L61.C and (T0291)K62.C only 0.0000000e+00 apart, marking (T0291)K62.C as missing WARNING: atoms too close: (T0291)K62.N and (T0291)V63.N only 0.0000000e+00 apart, marking (T0291)K62.N as missing WARNING: atoms too close: (T0291)K62.CA and (T0291)V63.CA only 0.0000000e+00 apart, marking (T0291)K62.CA as missing WARNING: atoms too close: (T0291)Y226.C and (T0291)R229.C only 0.0000000e+00 apart, marking (T0291)R229.C as missing WARNING: atoms too close: (T0291)G227.N and (T0291)P230.N only 0.0000000e+00 apart, marking (T0291)G227.N as missing WARNING: atoms too close: (T0291)G227.CA and (T0291)P230.CA only 0.0000000e+00 apart, marking (T0291)G227.CA as missing # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0291.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0291.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_334958126.pdb -s /var/tmp/to_scwrl_334958126.seq -o /var/tmp/from_scwrl_334958126.pdb > /var/tmp/scwrl_334958126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334958126.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_764585372.pdb -s /var/tmp/to_scwrl_764585372.seq -o /var/tmp/from_scwrl_764585372.pdb > /var/tmp/scwrl_764585372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764585372.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1274476146.pdb -s /var/tmp/to_scwrl_1274476146.seq -o /var/tmp/from_scwrl_1274476146.pdb > /var/tmp/scwrl_1274476146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274476146.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1426786665.pdb -s /var/tmp/to_scwrl_1426786665.seq -o /var/tmp/from_scwrl_1426786665.pdb > /var/tmp/scwrl_1426786665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1426786665.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_89695173.pdb -s /var/tmp/to_scwrl_89695173.seq -o /var/tmp/from_scwrl_89695173.pdb > /var/tmp/scwrl_89695173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_89695173.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1254545467.pdb -s /var/tmp/to_scwrl_1254545467.seq -o /var/tmp/from_scwrl_1254545467.pdb > /var/tmp/scwrl_1254545467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1254545467.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_854135093.pdb -s /var/tmp/to_scwrl_854135093.seq -o /var/tmp/from_scwrl_854135093.pdb > /var/tmp/scwrl_854135093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854135093.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1804625167.pdb -s /var/tmp/to_scwrl_1804625167.seq -o /var/tmp/from_scwrl_1804625167.pdb > /var/tmp/scwrl_1804625167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1804625167.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_810888561.pdb -s /var/tmp/to_scwrl_810888561.seq -o /var/tmp/from_scwrl_810888561.pdb > /var/tmp/scwrl_810888561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_810888561.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1928682259.pdb -s /var/tmp/to_scwrl_1928682259.seq -o /var/tmp/from_scwrl_1928682259.pdb > /var/tmp/scwrl_1928682259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928682259.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_242427004.pdb -s /var/tmp/to_scwrl_242427004.seq -o /var/tmp/from_scwrl_242427004.pdb > /var/tmp/scwrl_242427004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_242427004.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1194636967.pdb -s /var/tmp/to_scwrl_1194636967.seq -o /var/tmp/from_scwrl_1194636967.pdb > /var/tmp/scwrl_1194636967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1194636967.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2080859202.pdb -s /var/tmp/to_scwrl_2080859202.seq -o /var/tmp/from_scwrl_2080859202.pdb > /var/tmp/scwrl_2080859202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080859202.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1042767645.pdb -s /var/tmp/to_scwrl_1042767645.seq -o /var/tmp/from_scwrl_1042767645.pdb > /var/tmp/scwrl_1042767645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1042767645.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1412692387.pdb -s /var/tmp/to_scwrl_1412692387.seq -o /var/tmp/from_scwrl_1412692387.pdb > /var/tmp/scwrl_1412692387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412692387.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1966156490.pdb -s /var/tmp/to_scwrl_1966156490.seq -o /var/tmp/from_scwrl_1966156490.pdb > /var/tmp/scwrl_1966156490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966156490.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_77826920.pdb -s /var/tmp/to_scwrl_77826920.seq -o /var/tmp/from_scwrl_77826920.pdb > /var/tmp/scwrl_77826920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77826920.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_211146552.pdb -s /var/tmp/to_scwrl_211146552.seq -o /var/tmp/from_scwrl_211146552.pdb > /var/tmp/scwrl_211146552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211146552.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_210381054.pdb -s /var/tmp/to_scwrl_210381054.seq -o /var/tmp/from_scwrl_210381054.pdb > /var/tmp/scwrl_210381054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210381054.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1795292908.pdb -s /var/tmp/to_scwrl_1795292908.seq -o /var/tmp/from_scwrl_1795292908.pdb > /var/tmp/scwrl_1795292908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795292908.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1647118735.pdb -s /var/tmp/to_scwrl_1647118735.seq -o /var/tmp/from_scwrl_1647118735.pdb > /var/tmp/scwrl_1647118735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647118735.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2053619753.pdb -s /var/tmp/to_scwrl_2053619753.seq -o /var/tmp/from_scwrl_2053619753.pdb > /var/tmp/scwrl_2053619753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2053619753.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1318451462.pdb -s /var/tmp/to_scwrl_1318451462.seq -o /var/tmp/from_scwrl_1318451462.pdb > /var/tmp/scwrl_1318451462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1318451462.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_115276906.pdb -s /var/tmp/to_scwrl_115276906.seq -o /var/tmp/from_scwrl_115276906.pdb > /var/tmp/scwrl_115276906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115276906.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1593307125.pdb -s /var/tmp/to_scwrl_1593307125.seq -o /var/tmp/from_scwrl_1593307125.pdb > /var/tmp/scwrl_1593307125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593307125.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1436503133.pdb -s /var/tmp/to_scwrl_1436503133.seq -o /var/tmp/from_scwrl_1436503133.pdb > /var/tmp/scwrl_1436503133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1436503133.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1614635119.pdb -s /var/tmp/to_scwrl_1614635119.seq -o /var/tmp/from_scwrl_1614635119.pdb > /var/tmp/scwrl_1614635119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1614635119.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_984199923.pdb -s /var/tmp/to_scwrl_984199923.seq -o /var/tmp/from_scwrl_984199923.pdb > /var/tmp/scwrl_984199923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984199923.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_38853768.pdb -s /var/tmp/to_scwrl_38853768.seq -o /var/tmp/from_scwrl_38853768.pdb > /var/tmp/scwrl_38853768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38853768.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_971134217.pdb -s /var/tmp/to_scwrl_971134217.seq -o /var/tmp/from_scwrl_971134217.pdb > /var/tmp/scwrl_971134217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_971134217.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_590671078.pdb -s /var/tmp/to_scwrl_590671078.seq -o /var/tmp/from_scwrl_590671078.pdb > /var/tmp/scwrl_590671078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590671078.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_373811894.pdb -s /var/tmp/to_scwrl_373811894.seq -o /var/tmp/from_scwrl_373811894.pdb > /var/tmp/scwrl_373811894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373811894.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1735719589.pdb -s /var/tmp/to_scwrl_1735719589.seq -o /var/tmp/from_scwrl_1735719589.pdb > /var/tmp/scwrl_1735719589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735719589.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1865147225.pdb -s /var/tmp/to_scwrl_1865147225.seq -o /var/tmp/from_scwrl_1865147225.pdb > /var/tmp/scwrl_1865147225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865147225.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1800598559.pdb -s /var/tmp/to_scwrl_1800598559.seq -o /var/tmp/from_scwrl_1800598559.pdb > /var/tmp/scwrl_1800598559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800598559.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1825414762.pdb -s /var/tmp/to_scwrl_1825414762.seq -o /var/tmp/from_scwrl_1825414762.pdb > /var/tmp/scwrl_1825414762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1825414762.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_972209046.pdb -s /var/tmp/to_scwrl_972209046.seq -o /var/tmp/from_scwrl_972209046.pdb > /var/tmp/scwrl_972209046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972209046.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_507250005.pdb -s /var/tmp/to_scwrl_507250005.seq -o /var/tmp/from_scwrl_507250005.pdb > /var/tmp/scwrl_507250005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_507250005.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1482556282.pdb -s /var/tmp/to_scwrl_1482556282.seq -o /var/tmp/from_scwrl_1482556282.pdb > /var/tmp/scwrl_1482556282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482556282.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1783097606.pdb -s /var/tmp/to_scwrl_1783097606.seq -o /var/tmp/from_scwrl_1783097606.pdb > /var/tmp/scwrl_1783097606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783097606.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_288448618.pdb -s /var/tmp/to_scwrl_288448618.seq -o /var/tmp/from_scwrl_288448618.pdb > /var/tmp/scwrl_288448618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_288448618.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1724983286.pdb -s /var/tmp/to_scwrl_1724983286.seq -o /var/tmp/from_scwrl_1724983286.pdb > /var/tmp/scwrl_1724983286.log Error: Couldn't open file /var/tmp/from_scwrl_1724983286.pdb or /var/tmp/from_scwrl_1724983286.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1724983286_b.pdb or decoys//var/tmp/from_scwrl_1724983286_b.pdb.gz for input Trying /var/tmp/from_scwrl_1724983286_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1724983286_b.pdb or /var/tmp/from_scwrl_1724983286_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1724983286_a.pdb or decoys//var/tmp/from_scwrl_1724983286_a.pdb.gz for input Trying /var/tmp/from_scwrl_1724983286_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1724983286_a.pdb or /var/tmp/from_scwrl_1724983286_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1724983286.pdb or /var/tmp/from_scwrl_1724983286_b.pdb or /var/tmp/from_scwrl_1724983286_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_830250928.pdb -s /var/tmp/to_scwrl_830250928.seq -o /var/tmp/from_scwrl_830250928.pdb > /var/tmp/scwrl_830250928.log Error: Couldn't open file /var/tmp/from_scwrl_830250928.pdb or /var/tmp/from_scwrl_830250928.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_830250928_b.pdb or decoys//var/tmp/from_scwrl_830250928_b.pdb.gz for input Trying /var/tmp/from_scwrl_830250928_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_830250928_b.pdb or /var/tmp/from_scwrl_830250928_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_830250928_a.pdb or decoys//var/tmp/from_scwrl_830250928_a.pdb.gz for input Trying /var/tmp/from_scwrl_830250928_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_830250928_a.pdb or /var/tmp/from_scwrl_830250928_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_830250928.pdb or /var/tmp/from_scwrl_830250928_b.pdb or /var/tmp/from_scwrl_830250928_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_221824173.pdb -s /var/tmp/to_scwrl_221824173.seq -o /var/tmp/from_scwrl_221824173.pdb > /var/tmp/scwrl_221824173.log Error: Couldn't open file /var/tmp/from_scwrl_221824173.pdb or /var/tmp/from_scwrl_221824173.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_221824173_b.pdb or decoys//var/tmp/from_scwrl_221824173_b.pdb.gz for input Trying /var/tmp/from_scwrl_221824173_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_221824173_b.pdb or /var/tmp/from_scwrl_221824173_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_221824173_a.pdb or decoys//var/tmp/from_scwrl_221824173_a.pdb.gz for input Trying /var/tmp/from_scwrl_221824173_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_221824173_a.pdb or /var/tmp/from_scwrl_221824173_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_221824173.pdb or /var/tmp/from_scwrl_221824173_b.pdb or /var/tmp/from_scwrl_221824173_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_620267285.pdb -s /var/tmp/to_scwrl_620267285.seq -o /var/tmp/from_scwrl_620267285.pdb > /var/tmp/scwrl_620267285.log Error: Couldn't open file /var/tmp/from_scwrl_620267285.pdb or /var/tmp/from_scwrl_620267285.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_620267285_b.pdb or decoys//var/tmp/from_scwrl_620267285_b.pdb.gz for input Trying /var/tmp/from_scwrl_620267285_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_620267285_b.pdb or /var/tmp/from_scwrl_620267285_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_620267285_a.pdb or decoys//var/tmp/from_scwrl_620267285_a.pdb.gz for input Trying /var/tmp/from_scwrl_620267285_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_620267285_a.pdb or /var/tmp/from_scwrl_620267285_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_620267285.pdb or /var/tmp/from_scwrl_620267285_b.pdb or /var/tmp/from_scwrl_620267285_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_95459668.pdb -s /var/tmp/to_scwrl_95459668.seq -o /var/tmp/from_scwrl_95459668.pdb > /var/tmp/scwrl_95459668.log Error: Couldn't open file /var/tmp/from_scwrl_95459668.pdb or /var/tmp/from_scwrl_95459668.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_95459668_b.pdb or decoys//var/tmp/from_scwrl_95459668_b.pdb.gz for input Trying /var/tmp/from_scwrl_95459668_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_95459668_b.pdb or /var/tmp/from_scwrl_95459668_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_95459668_a.pdb or decoys//var/tmp/from_scwrl_95459668_a.pdb.gz for input Trying /var/tmp/from_scwrl_95459668_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_95459668_a.pdb or /var/tmp/from_scwrl_95459668_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_95459668.pdb or /var/tmp/from_scwrl_95459668_b.pdb or /var/tmp/from_scwrl_95459668_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_40497016.pdb -s /var/tmp/to_scwrl_40497016.seq -o /var/tmp/from_scwrl_40497016.pdb > /var/tmp/scwrl_40497016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_40497016.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_698094205.pdb -s /var/tmp/to_scwrl_698094205.seq -o /var/tmp/from_scwrl_698094205.pdb > /var/tmp/scwrl_698094205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698094205.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_306606221.pdb -s /var/tmp/to_scwrl_306606221.seq -o /var/tmp/from_scwrl_306606221.pdb > /var/tmp/scwrl_306606221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_306606221.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_250878070.pdb -s /var/tmp/to_scwrl_250878070.seq -o /var/tmp/from_scwrl_250878070.pdb > /var/tmp/scwrl_250878070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_250878070.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_345903467.pdb -s /var/tmp/to_scwrl_345903467.seq -o /var/tmp/from_scwrl_345903467.pdb > /var/tmp/scwrl_345903467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345903467.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1953724956.pdb -s /var/tmp/to_scwrl_1953724956.seq -o /var/tmp/from_scwrl_1953724956.pdb > /var/tmp/scwrl_1953724956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1953724956.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_157014176.pdb -s /var/tmp/to_scwrl_157014176.seq -o /var/tmp/from_scwrl_157014176.pdb > /var/tmp/scwrl_157014176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_157014176.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1664354929.pdb -s /var/tmp/to_scwrl_1664354929.seq -o /var/tmp/from_scwrl_1664354929.pdb > /var/tmp/scwrl_1664354929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664354929.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2069001862.pdb -s /var/tmp/to_scwrl_2069001862.seq -o /var/tmp/from_scwrl_2069001862.pdb > /var/tmp/scwrl_2069001862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2069001862.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1750321301.pdb -s /var/tmp/to_scwrl_1750321301.seq -o /var/tmp/from_scwrl_1750321301.pdb > /var/tmp/scwrl_1750321301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750321301.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_953374417.pdb -s /var/tmp/to_scwrl_953374417.seq -o /var/tmp/from_scwrl_953374417.pdb > /var/tmp/scwrl_953374417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953374417.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1536153334.pdb -s /var/tmp/to_scwrl_1536153334.seq -o /var/tmp/from_scwrl_1536153334.pdb > /var/tmp/scwrl_1536153334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536153334.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_587037577.pdb -s /var/tmp/to_scwrl_587037577.seq -o /var/tmp/from_scwrl_587037577.pdb > /var/tmp/scwrl_587037577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_587037577.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_992228185.pdb -s /var/tmp/to_scwrl_992228185.seq -o /var/tmp/from_scwrl_992228185.pdb > /var/tmp/scwrl_992228185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992228185.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_359803904.pdb -s /var/tmp/to_scwrl_359803904.seq -o /var/tmp/from_scwrl_359803904.pdb > /var/tmp/scwrl_359803904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_359803904.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1177708655.pdb -s /var/tmp/to_scwrl_1177708655.seq -o /var/tmp/from_scwrl_1177708655.pdb > /var/tmp/scwrl_1177708655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1177708655.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1366040078.pdb -s /var/tmp/to_scwrl_1366040078.seq -o /var/tmp/from_scwrl_1366040078.pdb > /var/tmp/scwrl_1366040078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366040078.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2095523493.pdb -s /var/tmp/to_scwrl_2095523493.seq -o /var/tmp/from_scwrl_2095523493.pdb > /var/tmp/scwrl_2095523493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095523493.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_895372234.pdb -s /var/tmp/to_scwrl_895372234.seq -o /var/tmp/from_scwrl_895372234.pdb > /var/tmp/scwrl_895372234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_895372234.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1019154991.pdb -s /var/tmp/to_scwrl_1019154991.seq -o /var/tmp/from_scwrl_1019154991.pdb > /var/tmp/scwrl_1019154991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1019154991.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1773454608.pdb -s /var/tmp/to_scwrl_1773454608.seq -o /var/tmp/from_scwrl_1773454608.pdb > /var/tmp/scwrl_1773454608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1773454608.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1867581279.pdb -s /var/tmp/to_scwrl_1867581279.seq -o /var/tmp/from_scwrl_1867581279.pdb > /var/tmp/scwrl_1867581279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867581279.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1526404996.pdb -s /var/tmp/to_scwrl_1526404996.seq -o /var/tmp/from_scwrl_1526404996.pdb > /var/tmp/scwrl_1526404996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526404996.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1108527243.pdb -s /var/tmp/to_scwrl_1108527243.seq -o /var/tmp/from_scwrl_1108527243.pdb > /var/tmp/scwrl_1108527243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108527243.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1503195238.pdb -s /var/tmp/to_scwrl_1503195238.seq -o /var/tmp/from_scwrl_1503195238.pdb > /var/tmp/scwrl_1503195238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503195238.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1814853614.pdb -s /var/tmp/to_scwrl_1814853614.seq -o /var/tmp/from_scwrl_1814853614.pdb > /var/tmp/scwrl_1814853614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814853614.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_686026884.pdb -s /var/tmp/to_scwrl_686026884.seq -o /var/tmp/from_scwrl_686026884.pdb > /var/tmp/scwrl_686026884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_686026884.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_185962519.pdb -s /var/tmp/to_scwrl_185962519.seq -o /var/tmp/from_scwrl_185962519.pdb > /var/tmp/scwrl_185962519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_185962519.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2036677787.pdb -s /var/tmp/to_scwrl_2036677787.seq -o /var/tmp/from_scwrl_2036677787.pdb > /var/tmp/scwrl_2036677787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036677787.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1306294168.pdb -s /var/tmp/to_scwrl_1306294168.seq -o /var/tmp/from_scwrl_1306294168.pdb > /var/tmp/scwrl_1306294168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306294168.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_281422188.pdb -s /var/tmp/to_scwrl_281422188.seq -o /var/tmp/from_scwrl_281422188.pdb > /var/tmp/scwrl_281422188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_281422188.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2077174803.pdb -s /var/tmp/to_scwrl_2077174803.seq -o /var/tmp/from_scwrl_2077174803.pdb > /var/tmp/scwrl_2077174803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077174803.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2004388373.pdb -s /var/tmp/to_scwrl_2004388373.seq -o /var/tmp/from_scwrl_2004388373.pdb > /var/tmp/scwrl_2004388373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2004388373.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_588028409.pdb -s /var/tmp/to_scwrl_588028409.seq -o /var/tmp/from_scwrl_588028409.pdb > /var/tmp/scwrl_588028409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_588028409.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_180569226.pdb -s /var/tmp/to_scwrl_180569226.seq -o /var/tmp/from_scwrl_180569226.pdb > /var/tmp/scwrl_180569226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180569226.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_202808193.pdb -s /var/tmp/to_scwrl_202808193.seq -o /var/tmp/from_scwrl_202808193.pdb > /var/tmp/scwrl_202808193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202808193.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_394269718.pdb -s /var/tmp/to_scwrl_394269718.seq -o /var/tmp/from_scwrl_394269718.pdb > /var/tmp/scwrl_394269718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_394269718.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_337583402.pdb -s /var/tmp/to_scwrl_337583402.seq -o /var/tmp/from_scwrl_337583402.pdb > /var/tmp/scwrl_337583402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_337583402.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1867163123.pdb -s /var/tmp/to_scwrl_1867163123.seq -o /var/tmp/from_scwrl_1867163123.pdb > /var/tmp/scwrl_1867163123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867163123.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_315787933.pdb -s /var/tmp/to_scwrl_315787933.seq -o /var/tmp/from_scwrl_315787933.pdb > /var/tmp/scwrl_315787933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315787933.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2087904703.pdb -s /var/tmp/to_scwrl_2087904703.seq -o /var/tmp/from_scwrl_2087904703.pdb > /var/tmp/scwrl_2087904703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087904703.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_673053893.pdb -s /var/tmp/to_scwrl_673053893.seq -o /var/tmp/from_scwrl_673053893.pdb > /var/tmp/scwrl_673053893.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673053893.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1851941267.pdb -s /var/tmp/to_scwrl_1851941267.seq -o /var/tmp/from_scwrl_1851941267.pdb > /var/tmp/scwrl_1851941267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1851941267.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_527458633.pdb -s /var/tmp/to_scwrl_527458633.seq -o /var/tmp/from_scwrl_527458633.pdb > /var/tmp/scwrl_527458633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_527458633.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1665282077.pdb -s /var/tmp/to_scwrl_1665282077.seq -o /var/tmp/from_scwrl_1665282077.pdb > /var/tmp/scwrl_1665282077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665282077.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_64261524.pdb -s /var/tmp/to_scwrl_64261524.seq -o /var/tmp/from_scwrl_64261524.pdb > /var/tmp/scwrl_64261524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64261524.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1705167288.pdb -s /var/tmp/to_scwrl_1705167288.seq -o /var/tmp/from_scwrl_1705167288.pdb > /var/tmp/scwrl_1705167288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1705167288.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_883838509.pdb -s /var/tmp/to_scwrl_883838509.seq -o /var/tmp/from_scwrl_883838509.pdb > /var/tmp/scwrl_883838509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_883838509.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_12301371.pdb -s /var/tmp/to_scwrl_12301371.seq -o /var/tmp/from_scwrl_12301371.pdb > /var/tmp/scwrl_12301371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12301371.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_453055875.pdb -s /var/tmp/to_scwrl_453055875.seq -o /var/tmp/from_scwrl_453055875.pdb > /var/tmp/scwrl_453055875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_453055875.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1902993499.pdb -s /var/tmp/to_scwrl_1902993499.seq -o /var/tmp/from_scwrl_1902993499.pdb > /var/tmp/scwrl_1902993499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1902993499.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1785755979.pdb -s /var/tmp/to_scwrl_1785755979.seq -o /var/tmp/from_scwrl_1785755979.pdb > /var/tmp/scwrl_1785755979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785755979.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_173153507.pdb -s /var/tmp/to_scwrl_173153507.seq -o /var/tmp/from_scwrl_173153507.pdb > /var/tmp/scwrl_173153507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173153507.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1281914848.pdb -s /var/tmp/to_scwrl_1281914848.seq -o /var/tmp/from_scwrl_1281914848.pdb > /var/tmp/scwrl_1281914848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281914848.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_746799577.pdb -s /var/tmp/to_scwrl_746799577.seq -o /var/tmp/from_scwrl_746799577.pdb > /var/tmp/scwrl_746799577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_746799577.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1676348746.pdb -s /var/tmp/to_scwrl_1676348746.seq -o /var/tmp/from_scwrl_1676348746.pdb > /var/tmp/scwrl_1676348746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676348746.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_949284816.pdb -s /var/tmp/to_scwrl_949284816.seq -o /var/tmp/from_scwrl_949284816.pdb > /var/tmp/scwrl_949284816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949284816.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1432826460.pdb -s /var/tmp/to_scwrl_1432826460.seq -o /var/tmp/from_scwrl_1432826460.pdb > /var/tmp/scwrl_1432826460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1432826460.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1862311265.pdb -s /var/tmp/to_scwrl_1862311265.seq -o /var/tmp/from_scwrl_1862311265.pdb > /var/tmp/scwrl_1862311265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862311265.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_838478956.pdb -s /var/tmp/to_scwrl_838478956.seq -o /var/tmp/from_scwrl_838478956.pdb > /var/tmp/scwrl_838478956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838478956.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_591636982.pdb -s /var/tmp/to_scwrl_591636982.seq -o /var/tmp/from_scwrl_591636982.pdb > /var/tmp/scwrl_591636982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591636982.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2143733453.pdb -s /var/tmp/to_scwrl_2143733453.seq -o /var/tmp/from_scwrl_2143733453.pdb > /var/tmp/scwrl_2143733453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143733453.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_768170112.pdb -s /var/tmp/to_scwrl_768170112.seq -o /var/tmp/from_scwrl_768170112.pdb > /var/tmp/scwrl_768170112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768170112.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_448541708.pdb -s /var/tmp/to_scwrl_448541708.seq -o /var/tmp/from_scwrl_448541708.pdb > /var/tmp/scwrl_448541708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_448541708.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_584278215.pdb -s /var/tmp/to_scwrl_584278215.seq -o /var/tmp/from_scwrl_584278215.pdb > /var/tmp/scwrl_584278215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_584278215.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_948739338.pdb -s /var/tmp/to_scwrl_948739338.seq -o /var/tmp/from_scwrl_948739338.pdb > /var/tmp/scwrl_948739338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948739338.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_651349902.pdb -s /var/tmp/to_scwrl_651349902.seq -o /var/tmp/from_scwrl_651349902.pdb > /var/tmp/scwrl_651349902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_651349902.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_978547933.pdb -s /var/tmp/to_scwrl_978547933.seq -o /var/tmp/from_scwrl_978547933.pdb > /var/tmp/scwrl_978547933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_978547933.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1286322739.pdb -s /var/tmp/to_scwrl_1286322739.seq -o /var/tmp/from_scwrl_1286322739.pdb > /var/tmp/scwrl_1286322739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1286322739.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_371029378.pdb -s /var/tmp/to_scwrl_371029378.seq -o /var/tmp/from_scwrl_371029378.pdb > /var/tmp/scwrl_371029378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371029378.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1294335865.pdb -s /var/tmp/to_scwrl_1294335865.seq -o /var/tmp/from_scwrl_1294335865.pdb > /var/tmp/scwrl_1294335865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294335865.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1226743795.pdb -s /var/tmp/to_scwrl_1226743795.seq -o /var/tmp/from_scwrl_1226743795.pdb > /var/tmp/scwrl_1226743795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1226743795.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1044083271.pdb -s /var/tmp/to_scwrl_1044083271.seq -o /var/tmp/from_scwrl_1044083271.pdb > /var/tmp/scwrl_1044083271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1044083271.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_998793486.pdb -s /var/tmp/to_scwrl_998793486.seq -o /var/tmp/from_scwrl_998793486.pdb > /var/tmp/scwrl_998793486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_998793486.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1754202429.pdb -s /var/tmp/to_scwrl_1754202429.seq -o /var/tmp/from_scwrl_1754202429.pdb > /var/tmp/scwrl_1754202429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754202429.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_561881701.pdb -s /var/tmp/to_scwrl_561881701.seq -o /var/tmp/from_scwrl_561881701.pdb > /var/tmp/scwrl_561881701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561881701.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1063055011.pdb -s /var/tmp/to_scwrl_1063055011.seq -o /var/tmp/from_scwrl_1063055011.pdb > /var/tmp/scwrl_1063055011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1063055011.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1311886070.pdb -s /var/tmp/to_scwrl_1311886070.seq -o /var/tmp/from_scwrl_1311886070.pdb > /var/tmp/scwrl_1311886070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1311886070.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1445720209.pdb -s /var/tmp/to_scwrl_1445720209.seq -o /var/tmp/from_scwrl_1445720209.pdb > /var/tmp/scwrl_1445720209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1445720209.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1075356381.pdb -s /var/tmp/to_scwrl_1075356381.seq -o /var/tmp/from_scwrl_1075356381.pdb > /var/tmp/scwrl_1075356381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075356381.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1764941946.pdb -s /var/tmp/to_scwrl_1764941946.seq -o /var/tmp/from_scwrl_1764941946.pdb > /var/tmp/scwrl_1764941946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1764941946.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1201230061.pdb -s /var/tmp/to_scwrl_1201230061.seq -o /var/tmp/from_scwrl_1201230061.pdb > /var/tmp/scwrl_1201230061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201230061.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_713628714.pdb -s /var/tmp/to_scwrl_713628714.seq -o /var/tmp/from_scwrl_713628714.pdb > /var/tmp/scwrl_713628714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_713628714.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1938095453.pdb -s /var/tmp/to_scwrl_1938095453.seq -o /var/tmp/from_scwrl_1938095453.pdb > /var/tmp/scwrl_1938095453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938095453.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_335661264.pdb -s /var/tmp/to_scwrl_335661264.seq -o /var/tmp/from_scwrl_335661264.pdb > /var/tmp/scwrl_335661264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335661264.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1460428290.pdb -s /var/tmp/to_scwrl_1460428290.seq -o /var/tmp/from_scwrl_1460428290.pdb > /var/tmp/scwrl_1460428290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460428290.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1466960552.pdb -s /var/tmp/to_scwrl_1466960552.seq -o /var/tmp/from_scwrl_1466960552.pdb > /var/tmp/scwrl_1466960552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1466960552.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1284946079.pdb -s /var/tmp/to_scwrl_1284946079.seq -o /var/tmp/from_scwrl_1284946079.pdb > /var/tmp/scwrl_1284946079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284946079.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_745771104.pdb -s /var/tmp/to_scwrl_745771104.seq -o /var/tmp/from_scwrl_745771104.pdb > /var/tmp/scwrl_745771104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745771104.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1181788171.pdb -s /var/tmp/to_scwrl_1181788171.seq -o /var/tmp/from_scwrl_1181788171.pdb > /var/tmp/scwrl_1181788171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1181788171.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2123425036.pdb -s /var/tmp/to_scwrl_2123425036.seq -o /var/tmp/from_scwrl_2123425036.pdb > /var/tmp/scwrl_2123425036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123425036.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1337408085.pdb -s /var/tmp/to_scwrl_1337408085.seq -o /var/tmp/from_scwrl_1337408085.pdb > /var/tmp/scwrl_1337408085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337408085.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1178037977.pdb -s /var/tmp/to_scwrl_1178037977.seq -o /var/tmp/from_scwrl_1178037977.pdb > /var/tmp/scwrl_1178037977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1178037977.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_744111501.pdb -s /var/tmp/to_scwrl_744111501.seq -o /var/tmp/from_scwrl_744111501.pdb > /var/tmp/scwrl_744111501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_744111501.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1785949794.pdb -s /var/tmp/to_scwrl_1785949794.seq -o /var/tmp/from_scwrl_1785949794.pdb > /var/tmp/scwrl_1785949794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785949794.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1762316193.pdb -s /var/tmp/to_scwrl_1762316193.seq -o /var/tmp/from_scwrl_1762316193.pdb > /var/tmp/scwrl_1762316193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1762316193.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1692850839.pdb -s /var/tmp/to_scwrl_1692850839.seq -o /var/tmp/from_scwrl_1692850839.pdb > /var/tmp/scwrl_1692850839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1692850839.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_289816049.pdb -s /var/tmp/to_scwrl_289816049.seq -o /var/tmp/from_scwrl_289816049.pdb > /var/tmp/scwrl_289816049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289816049.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_593380479.pdb -s /var/tmp/to_scwrl_593380479.seq -o /var/tmp/from_scwrl_593380479.pdb > /var/tmp/scwrl_593380479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593380479.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_831689932.pdb -s /var/tmp/to_scwrl_831689932.seq -o /var/tmp/from_scwrl_831689932.pdb > /var/tmp/scwrl_831689932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831689932.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_660845427.pdb -s /var/tmp/to_scwrl_660845427.seq -o /var/tmp/from_scwrl_660845427.pdb > /var/tmp/scwrl_660845427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660845427.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1887716345.pdb -s /var/tmp/to_scwrl_1887716345.seq -o /var/tmp/from_scwrl_1887716345.pdb > /var/tmp/scwrl_1887716345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887716345.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2058433728.pdb -s /var/tmp/to_scwrl_2058433728.seq -o /var/tmp/from_scwrl_2058433728.pdb > /var/tmp/scwrl_2058433728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2058433728.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1704928697.pdb -s /var/tmp/to_scwrl_1704928697.seq -o /var/tmp/from_scwrl_1704928697.pdb > /var/tmp/scwrl_1704928697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704928697.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_739026184.pdb -s /var/tmp/to_scwrl_739026184.seq -o /var/tmp/from_scwrl_739026184.pdb > /var/tmp/scwrl_739026184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739026184.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1665152510.pdb -s /var/tmp/to_scwrl_1665152510.seq -o /var/tmp/from_scwrl_1665152510.pdb > /var/tmp/scwrl_1665152510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665152510.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_119326751.pdb -s /var/tmp/to_scwrl_119326751.seq -o /var/tmp/from_scwrl_119326751.pdb > /var/tmp/scwrl_119326751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_119326751.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1802081194.pdb -s /var/tmp/to_scwrl_1802081194.seq -o /var/tmp/from_scwrl_1802081194.pdb > /var/tmp/scwrl_1802081194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802081194.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_829554934.pdb -s /var/tmp/to_scwrl_829554934.seq -o /var/tmp/from_scwrl_829554934.pdb > /var/tmp/scwrl_829554934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_829554934.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1565046960.pdb -s /var/tmp/to_scwrl_1565046960.seq -o /var/tmp/from_scwrl_1565046960.pdb > /var/tmp/scwrl_1565046960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1565046960.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_729953929.pdb -s /var/tmp/to_scwrl_729953929.seq -o /var/tmp/from_scwrl_729953929.pdb > /var/tmp/scwrl_729953929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729953929.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_447013233.pdb -s /var/tmp/to_scwrl_447013233.seq -o /var/tmp/from_scwrl_447013233.pdb > /var/tmp/scwrl_447013233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_447013233.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_618793375.pdb -s /var/tmp/to_scwrl_618793375.seq -o /var/tmp/from_scwrl_618793375.pdb > /var/tmp/scwrl_618793375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_618793375.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1443582643.pdb -s /var/tmp/to_scwrl_1443582643.seq -o /var/tmp/from_scwrl_1443582643.pdb > /var/tmp/scwrl_1443582643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443582643.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_237625040.pdb -s /var/tmp/to_scwrl_237625040.seq -o /var/tmp/from_scwrl_237625040.pdb > /var/tmp/scwrl_237625040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237625040.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_954454639.pdb -s /var/tmp/to_scwrl_954454639.seq -o /var/tmp/from_scwrl_954454639.pdb > /var/tmp/scwrl_954454639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954454639.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_756527287.pdb -s /var/tmp/to_scwrl_756527287.seq -o /var/tmp/from_scwrl_756527287.pdb > /var/tmp/scwrl_756527287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_756527287.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1704585592.pdb -s /var/tmp/to_scwrl_1704585592.seq -o /var/tmp/from_scwrl_1704585592.pdb > /var/tmp/scwrl_1704585592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704585592.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_91917072.pdb -s /var/tmp/to_scwrl_91917072.seq -o /var/tmp/from_scwrl_91917072.pdb > /var/tmp/scwrl_91917072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_91917072.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1502298391.pdb -s /var/tmp/to_scwrl_1502298391.seq -o /var/tmp/from_scwrl_1502298391.pdb > /var/tmp/scwrl_1502298391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502298391.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_738890117.pdb -s /var/tmp/to_scwrl_738890117.seq -o /var/tmp/from_scwrl_738890117.pdb > /var/tmp/scwrl_738890117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738890117.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_67858461.pdb -s /var/tmp/to_scwrl_67858461.seq -o /var/tmp/from_scwrl_67858461.pdb > /var/tmp/scwrl_67858461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67858461.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_692222830.pdb -s /var/tmp/to_scwrl_692222830.seq -o /var/tmp/from_scwrl_692222830.pdb > /var/tmp/scwrl_692222830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692222830.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1916928095.pdb -s /var/tmp/to_scwrl_1916928095.seq -o /var/tmp/from_scwrl_1916928095.pdb > /var/tmp/scwrl_1916928095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916928095.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_811969962.pdb -s /var/tmp/to_scwrl_811969962.seq -o /var/tmp/from_scwrl_811969962.pdb > /var/tmp/scwrl_811969962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_811969962.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_330688977.pdb -s /var/tmp/to_scwrl_330688977.seq -o /var/tmp/from_scwrl_330688977.pdb > /var/tmp/scwrl_330688977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_330688977.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1531760641.pdb -s /var/tmp/to_scwrl_1531760641.seq -o /var/tmp/from_scwrl_1531760641.pdb > /var/tmp/scwrl_1531760641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1531760641.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_357337154.pdb -s /var/tmp/to_scwrl_357337154.seq -o /var/tmp/from_scwrl_357337154.pdb > /var/tmp/scwrl_357337154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_357337154.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_620505026.pdb -s /var/tmp/to_scwrl_620505026.seq -o /var/tmp/from_scwrl_620505026.pdb > /var/tmp/scwrl_620505026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620505026.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2125141120.pdb -s /var/tmp/to_scwrl_2125141120.seq -o /var/tmp/from_scwrl_2125141120.pdb > /var/tmp/scwrl_2125141120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125141120.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1189027086.pdb -s /var/tmp/to_scwrl_1189027086.seq -o /var/tmp/from_scwrl_1189027086.pdb > /var/tmp/scwrl_1189027086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189027086.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1281350452.pdb -s /var/tmp/to_scwrl_1281350452.seq -o /var/tmp/from_scwrl_1281350452.pdb > /var/tmp/scwrl_1281350452.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281350452.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1865373818.pdb -s /var/tmp/to_scwrl_1865373818.seq -o /var/tmp/from_scwrl_1865373818.pdb > /var/tmp/scwrl_1865373818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865373818.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1099977167.pdb -s /var/tmp/to_scwrl_1099977167.seq -o /var/tmp/from_scwrl_1099977167.pdb > /var/tmp/scwrl_1099977167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1099977167.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_838795503.pdb -s /var/tmp/to_scwrl_838795503.seq -o /var/tmp/from_scwrl_838795503.pdb > /var/tmp/scwrl_838795503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838795503.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_456916356.pdb -s /var/tmp/to_scwrl_456916356.seq -o /var/tmp/from_scwrl_456916356.pdb > /var/tmp/scwrl_456916356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456916356.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_617646031.pdb -s /var/tmp/to_scwrl_617646031.seq -o /var/tmp/from_scwrl_617646031.pdb > /var/tmp/scwrl_617646031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_617646031.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_958122254.pdb -s /var/tmp/to_scwrl_958122254.seq -o /var/tmp/from_scwrl_958122254.pdb > /var/tmp/scwrl_958122254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_958122254.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_111513903.pdb -s /var/tmp/to_scwrl_111513903.seq -o /var/tmp/from_scwrl_111513903.pdb > /var/tmp/scwrl_111513903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111513903.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1447200964.pdb -s /var/tmp/to_scwrl_1447200964.seq -o /var/tmp/from_scwrl_1447200964.pdb > /var/tmp/scwrl_1447200964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447200964.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_375685567.pdb -s /var/tmp/to_scwrl_375685567.seq -o /var/tmp/from_scwrl_375685567.pdb > /var/tmp/scwrl_375685567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_375685567.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_841467833.pdb -s /var/tmp/to_scwrl_841467833.seq -o /var/tmp/from_scwrl_841467833.pdb > /var/tmp/scwrl_841467833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_841467833.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1894214198.pdb -s /var/tmp/to_scwrl_1894214198.seq -o /var/tmp/from_scwrl_1894214198.pdb > /var/tmp/scwrl_1894214198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1894214198.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_994478943.pdb -s /var/tmp/to_scwrl_994478943.seq -o /var/tmp/from_scwrl_994478943.pdb > /var/tmp/scwrl_994478943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994478943.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_137566829.pdb -s /var/tmp/to_scwrl_137566829.seq -o /var/tmp/from_scwrl_137566829.pdb > /var/tmp/scwrl_137566829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137566829.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2131839238.pdb -s /var/tmp/to_scwrl_2131839238.seq -o /var/tmp/from_scwrl_2131839238.pdb > /var/tmp/scwrl_2131839238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131839238.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1948933581.pdb -s /var/tmp/to_scwrl_1948933581.seq -o /var/tmp/from_scwrl_1948933581.pdb > /var/tmp/scwrl_1948933581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948933581.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_894094116.pdb -s /var/tmp/to_scwrl_894094116.seq -o /var/tmp/from_scwrl_894094116.pdb > /var/tmp/scwrl_894094116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_894094116.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1688941183.pdb -s /var/tmp/to_scwrl_1688941183.seq -o /var/tmp/from_scwrl_1688941183.pdb > /var/tmp/scwrl_1688941183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688941183.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2040850653.pdb -s /var/tmp/to_scwrl_2040850653.seq -o /var/tmp/from_scwrl_2040850653.pdb > /var/tmp/scwrl_2040850653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2040850653.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_248908860.pdb -s /var/tmp/to_scwrl_248908860.seq -o /var/tmp/from_scwrl_248908860.pdb > /var/tmp/scwrl_248908860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_248908860.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_280347654.pdb -s /var/tmp/to_scwrl_280347654.seq -o /var/tmp/from_scwrl_280347654.pdb > /var/tmp/scwrl_280347654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280347654.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2108709114.pdb -s /var/tmp/to_scwrl_2108709114.seq -o /var/tmp/from_scwrl_2108709114.pdb > /var/tmp/scwrl_2108709114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108709114.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_941131691.pdb -s /var/tmp/to_scwrl_941131691.seq -o /var/tmp/from_scwrl_941131691.pdb > /var/tmp/scwrl_941131691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_941131691.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_49792102.pdb -s /var/tmp/to_scwrl_49792102.seq -o /var/tmp/from_scwrl_49792102.pdb > /var/tmp/scwrl_49792102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49792102.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_773195430.pdb -s /var/tmp/to_scwrl_773195430.seq -o /var/tmp/from_scwrl_773195430.pdb > /var/tmp/scwrl_773195430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_773195430.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1271820667.pdb -s /var/tmp/to_scwrl_1271820667.seq -o /var/tmp/from_scwrl_1271820667.pdb > /var/tmp/scwrl_1271820667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271820667.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1581552743.pdb -s /var/tmp/to_scwrl_1581552743.seq -o /var/tmp/from_scwrl_1581552743.pdb > /var/tmp/scwrl_1581552743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581552743.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1130532583.pdb -s /var/tmp/to_scwrl_1130532583.seq -o /var/tmp/from_scwrl_1130532583.pdb > /var/tmp/scwrl_1130532583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130532583.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1892325694.pdb -s /var/tmp/to_scwrl_1892325694.seq -o /var/tmp/from_scwrl_1892325694.pdb > /var/tmp/scwrl_1892325694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1892325694.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1559210216.pdb -s /var/tmp/to_scwrl_1559210216.seq -o /var/tmp/from_scwrl_1559210216.pdb > /var/tmp/scwrl_1559210216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559210216.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_172076023.pdb -s /var/tmp/to_scwrl_172076023.seq -o /var/tmp/from_scwrl_172076023.pdb > /var/tmp/scwrl_172076023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172076023.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1026192500.pdb -s /var/tmp/to_scwrl_1026192500.seq -o /var/tmp/from_scwrl_1026192500.pdb > /var/tmp/scwrl_1026192500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026192500.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1277100388.pdb -s /var/tmp/to_scwrl_1277100388.seq -o /var/tmp/from_scwrl_1277100388.pdb > /var/tmp/scwrl_1277100388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1277100388.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1272053190.pdb -s /var/tmp/to_scwrl_1272053190.seq -o /var/tmp/from_scwrl_1272053190.pdb > /var/tmp/scwrl_1272053190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272053190.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1864988003.pdb -s /var/tmp/to_scwrl_1864988003.seq -o /var/tmp/from_scwrl_1864988003.pdb > /var/tmp/scwrl_1864988003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864988003.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1734016744.pdb -s /var/tmp/to_scwrl_1734016744.seq -o /var/tmp/from_scwrl_1734016744.pdb > /var/tmp/scwrl_1734016744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1734016744.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1889699221.pdb -s /var/tmp/to_scwrl_1889699221.seq -o /var/tmp/from_scwrl_1889699221.pdb > /var/tmp/scwrl_1889699221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1889699221.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_675626610.pdb -s /var/tmp/to_scwrl_675626610.seq -o /var/tmp/from_scwrl_675626610.pdb > /var/tmp/scwrl_675626610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_675626610.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1845530647.pdb -s /var/tmp/to_scwrl_1845530647.seq -o /var/tmp/from_scwrl_1845530647.pdb > /var/tmp/scwrl_1845530647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845530647.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1189416539.pdb -s /var/tmp/to_scwrl_1189416539.seq -o /var/tmp/from_scwrl_1189416539.pdb > /var/tmp/scwrl_1189416539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189416539.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1051312178.pdb -s /var/tmp/to_scwrl_1051312178.seq -o /var/tmp/from_scwrl_1051312178.pdb > /var/tmp/scwrl_1051312178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1051312178.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_539514833.pdb -s /var/tmp/to_scwrl_539514833.seq -o /var/tmp/from_scwrl_539514833.pdb > /var/tmp/scwrl_539514833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_539514833.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_936147091.pdb -s /var/tmp/to_scwrl_936147091.seq -o /var/tmp/from_scwrl_936147091.pdb > /var/tmp/scwrl_936147091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_936147091.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_2045791120.pdb -s /var/tmp/to_scwrl_2045791120.seq -o /var/tmp/from_scwrl_2045791120.pdb > /var/tmp/scwrl_2045791120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045791120.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_677081662.pdb -s /var/tmp/to_scwrl_677081662.seq -o /var/tmp/from_scwrl_677081662.pdb > /var/tmp/scwrl_677081662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_677081662.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_920502682.pdb -s /var/tmp/to_scwrl_920502682.seq -o /var/tmp/from_scwrl_920502682.pdb > /var/tmp/scwrl_920502682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_920502682.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1847241054.pdb -s /var/tmp/to_scwrl_1847241054.seq -o /var/tmp/from_scwrl_1847241054.pdb > /var/tmp/scwrl_1847241054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1847241054.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1571175778.pdb -s /var/tmp/to_scwrl_1571175778.seq -o /var/tmp/from_scwrl_1571175778.pdb > /var/tmp/scwrl_1571175778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571175778.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_461960218.pdb -s /var/tmp/to_scwrl_461960218.seq -o /var/tmp/from_scwrl_461960218.pdb > /var/tmp/scwrl_461960218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_461960218.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1740608061.pdb -s /var/tmp/to_scwrl_1740608061.seq -o /var/tmp/from_scwrl_1740608061.pdb > /var/tmp/scwrl_1740608061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1740608061.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1820084638.pdb -s /var/tmp/to_scwrl_1820084638.seq -o /var/tmp/from_scwrl_1820084638.pdb > /var/tmp/scwrl_1820084638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820084638.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_742307872.pdb -s /var/tmp/to_scwrl_742307872.seq -o /var/tmp/from_scwrl_742307872.pdb > /var/tmp/scwrl_742307872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_742307872.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0291)G139.O and (T0291)M140.N only 0.0000000e+00 apart, marking (T0291)M140.N as missing WARNING: atoms too close: (T0291)Y142.O and (T0291)L143.N only 0.0000000e+00 apart, marking (T0291)L143.N as missing WARNING: atoms too close: (T0291)V168.O and (T0291)S169.N only 0.0000000e+00 apart, marking (T0291)S169.N as missing # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1701833528.pdb -s /var/tmp/to_scwrl_1701833528.seq -o /var/tmp/from_scwrl_1701833528.pdb > /var/tmp/scwrl_1701833528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1701833528.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_613732682.pdb -s /var/tmp/to_scwrl_613732682.seq -o /var/tmp/from_scwrl_613732682.pdb > /var/tmp/scwrl_613732682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613732682.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_792099974.pdb -s /var/tmp/to_scwrl_792099974.seq -o /var/tmp/from_scwrl_792099974.pdb > /var/tmp/scwrl_792099974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_792099974.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_327545311.pdb -s /var/tmp/to_scwrl_327545311.seq -o /var/tmp/from_scwrl_327545311.pdb > /var/tmp/scwrl_327545311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327545311.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1885553350.pdb -s /var/tmp/to_scwrl_1885553350.seq -o /var/tmp/from_scwrl_1885553350.pdb > /var/tmp/scwrl_1885553350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885553350.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_226169070.pdb -s /var/tmp/to_scwrl_226169070.seq -o /var/tmp/from_scwrl_226169070.pdb > /var/tmp/scwrl_226169070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226169070.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1458077895.pdb -s /var/tmp/to_scwrl_1458077895.seq -o /var/tmp/from_scwrl_1458077895.pdb > /var/tmp/scwrl_1458077895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1458077895.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1630395397.pdb -s /var/tmp/to_scwrl_1630395397.seq -o /var/tmp/from_scwrl_1630395397.pdb > /var/tmp/scwrl_1630395397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630395397.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1785379287.pdb -s /var/tmp/to_scwrl_1785379287.seq -o /var/tmp/from_scwrl_1785379287.pdb > /var/tmp/scwrl_1785379287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785379287.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_1630153918.pdb -s /var/tmp/to_scwrl_1630153918.seq -o /var/tmp/from_scwrl_1630153918.pdb > /var/tmp/scwrl_1630153918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630153918.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_509104250.pdb -s /var/tmp/to_scwrl_509104250.seq -o /var/tmp/from_scwrl_509104250.pdb > /var/tmp/scwrl_509104250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_509104250.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 1146 has residue number 1 < previous residue 301 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_914996029.pdb -s /var/tmp/to_scwrl_914996029.seq -o /var/tmp/from_scwrl_914996029.pdb > /var/tmp/scwrl_914996029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914996029.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_754723463.pdb -s /var/tmp/to_scwrl_754723463.seq -o /var/tmp/from_scwrl_754723463.pdb > /var/tmp/scwrl_754723463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754723463.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_226608606.pdb -s /var/tmp/to_scwrl_226608606.seq -o /var/tmp/from_scwrl_226608606.pdb > /var/tmp/scwrl_226608606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226608606.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_501529126.pdb -s /var/tmp/to_scwrl_501529126.seq -o /var/tmp/from_scwrl_501529126.pdb > /var/tmp/scwrl_501529126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501529126.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_496939037.pdb -s /var/tmp/to_scwrl_496939037.seq -o /var/tmp/from_scwrl_496939037.pdb > /var/tmp/scwrl_496939037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_496939037.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_902235217.pdb -s /var/tmp/to_scwrl_902235217.seq -o /var/tmp/from_scwrl_902235217.pdb > /var/tmp/scwrl_902235217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902235217.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 279 ; scwrl3 -i /var/tmp/to_scwrl_199576126.pdb -s /var/tmp/to_scwrl_199576126.seq -o /var/tmp/from_scwrl_199576126.pdb > /var/tmp/scwrl_199576126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_199576126.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 72.214 sec, elapsed time= 860.835 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -258.123 shub_TS1 costs 0 real_cost = -263.639 nFOLD_TS5-scwrl costs 0 real_cost = 113.491 nFOLD_TS5 costs 0 real_cost = 243.373 nFOLD_TS4-scwrl costs 0 real_cost = 72.5377 nFOLD_TS4 costs 0 real_cost = 214.391 nFOLD_TS3-scwrl costs 0 real_cost = 52.0403 nFOLD_TS3 costs 0 real_cost = 178.323 nFOLD_TS2-scwrl costs 0 real_cost = -85.2151 nFOLD_TS2 costs 0 real_cost = 73.2047 nFOLD_TS1-scwrl costs 0 real_cost = -73.0197 nFOLD_TS1 costs 0 real_cost = 93.1875 mGen-3D_TS1-scwrl costs 0 real_cost = 47.3567 mGen-3D_TS1 costs 0 real_cost = 159.777 keasar-server_TS5-scwrl costs 0 real_cost = -188.103 keasar-server_TS5 costs 0 real_cost = -191.183 keasar-server_TS4-scwrl costs 0 real_cost = -139.763 keasar-server_TS4 costs 0 real_cost = -143.56 keasar-server_TS3-scwrl costs 0 real_cost = -139.763 keasar-server_TS3 costs 0 real_cost = -143.56 keasar-server_TS2-scwrl costs 0 real_cost = -72.2017 keasar-server_TS2 costs 0 real_cost = -73.6218 keasar-server_TS1-scwrl costs 0 real_cost = -72.2017 keasar-server_TS1 costs 0 real_cost = -73.6218 karypis.srv_TS5-scwrl costs 0 real_cost = 35.4864 karypis.srv_TS5 costs 0 real_cost = 34.6729 karypis.srv_TS4-scwrl costs 0 real_cost = -41.8312 karypis.srv_TS4 costs 0 real_cost = -40.3351 karypis.srv_TS3-scwrl costs 0 real_cost = -122.198 karypis.srv_TS3 costs 0 real_cost = -121.585 karypis.srv_TS2-scwrl costs 0 real_cost = -68.055 karypis.srv_TS2 costs 0 real_cost = -71.3217 karypis.srv_TS1-scwrl costs 0 real_cost = -105.258 karypis.srv_TS1 costs 0 real_cost = -104.539 karypis.srv.4_TS1-scwrl costs 0 real_cost = 360.264 karypis.srv.4_TS1 costs 0 real_cost = 360.566 karypis.srv.2_TS5-scwrl costs 0 real_cost = 312.096 karypis.srv.2_TS5 costs 0 real_cost = 312.096 karypis.srv.2_TS4-scwrl costs 0 real_cost = 435.796 karypis.srv.2_TS4 costs 0 real_cost = 435.796 karypis.srv.2_TS3-scwrl costs 0 real_cost = 370.987 karypis.srv.2_TS3 costs 0 real_cost = 370.987 karypis.srv.2_TS2-scwrl costs 0 real_cost = 331.607 karypis.srv.2_TS2 costs 0 real_cost = 330.953 karypis.srv.2_TS1-scwrl costs 0 real_cost = 340.795 karypis.srv.2_TS1 costs 0 real_cost = 340.795 gtg_AL5-scwrl costs 0 real_cost = -153.336 gtg_AL5 costs 0 real_cost = 46.264 gtg_AL4-scwrl costs 0 real_cost = -52.961 gtg_AL4 costs 0 real_cost = 158.07 gtg_AL3-scwrl costs 0 real_cost = -139.546 gtg_AL3 costs 0 real_cost = 62.4522 gtg_AL2-scwrl costs 0 real_cost = -35.8289 gtg_AL2 costs 0 real_cost = 172.121 gtg_AL1-scwrl costs 0 real_cost = -269.969 gtg_AL1 costs 0 real_cost = -93.1169 forecast-s_AL5-scwrl costs 0 real_cost = -131.76 forecast-s_AL5 costs 0 real_cost = 74.2936 forecast-s_AL4-scwrl costs 0 real_cost = -127.418 forecast-s_AL4 costs 0 real_cost = 64.0295 forecast-s_AL3-scwrl costs 0 real_cost = -52.3669 forecast-s_AL3 costs 0 real_cost = 120.098 forecast-s_AL2-scwrl costs 0 real_cost = 17.1556 forecast-s_AL2 costs 0 real_cost = 208.88 forecast-s_AL1-scwrl costs 0 real_cost = -80.7287 forecast-s_AL1 costs 0 real_cost = 140.12 beautshotbase_TS1-scwrl costs 0 real_cost = -233.084 beautshotbase_TS1 costs 0 real_cost = -232.177 beautshot_TS1-scwrl costs 0 real_cost = -149.481 beautshot_TS1 costs 0 real_cost = -151.103 Zhang-Server_TS5-scwrl costs 0 real_cost = -195.733 Zhang-Server_TS5 costs 0 real_cost = -199.91 Zhang-Server_TS4-scwrl costs 0 real_cost = -166.332 Zhang-Server_TS4 costs 0 real_cost = -164.289 Zhang-Server_TS3-scwrl costs 0 real_cost = -148.429 Zhang-Server_TS3 costs 0 real_cost = -147.763 Zhang-Server_TS2-scwrl costs 0 real_cost = -196.691 Zhang-Server_TS2 costs 0 real_cost = -194.674 Zhang-Server_TS1-scwrl costs 0 real_cost = -228.219 Zhang-Server_TS1 costs 0 real_cost = -232.63 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -51.1036 UNI-EID_sfst_AL5 costs 0 real_cost = 120.898 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -99.501 UNI-EID_sfst_AL4 costs 0 real_cost = 89.7964 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -18.5709 UNI-EID_sfst_AL3 costs 0 real_cost = 176.018 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -133.494 UNI-EID_sfst_AL2 costs 0 real_cost = 45.3845 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -278.677 UNI-EID_sfst_AL1 costs 0 real_cost = -97.1016 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -123.52 UNI-EID_expm_TS1 costs 0 real_cost = 55.6544 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -54.2997 UNI-EID_bnmx_TS5 costs 0 real_cost = 116.466 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -108.062 UNI-EID_bnmx_TS4 costs 0 real_cost = 83.5948 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -22.9821 UNI-EID_bnmx_TS3 costs 0 real_cost = 178.865 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -133.494 UNI-EID_bnmx_TS2 costs 0 real_cost = 45.3845 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -278.677 UNI-EID_bnmx_TS1 costs 0 real_cost = -97.1016 SPARKS2_TS5-scwrl costs 0 real_cost = -219.182 SPARKS2_TS5 costs 0 real_cost = -228.963 SPARKS2_TS4-scwrl costs 0 real_cost = -159.212 SPARKS2_TS4 costs 0 real_cost = -163.282 SPARKS2_TS3-scwrl costs 0 real_cost = -111.473 SPARKS2_TS3 costs 0 real_cost = -111.308 SPARKS2_TS2-scwrl costs 0 real_cost = -76.3746 SPARKS2_TS2 costs 0 real_cost = -80.7475 SPARKS2_TS1-scwrl costs 0 real_cost = -90.0923 SPARKS2_TS1 costs 0 real_cost = 137.038 SP4_TS5-scwrl costs 0 real_cost = -65.4783 SP4_TS5 costs 0 real_cost = -65.2708 SP4_TS4-scwrl costs 0 real_cost = -183.683 SP4_TS4 costs 0 real_cost = -188.139 SP4_TS3-scwrl costs 0 real_cost = -110.829 SP4_TS3 costs 0 real_cost = -107.723 SP4_TS2-scwrl costs 0 real_cost = -101.124 SP4_TS2 costs 0 real_cost = -105.678 SP4_TS1-scwrl costs 0 real_cost = -91.5922 SP4_TS1 costs 0 real_cost = 134.503 SP3_TS5-scwrl costs 0 real_cost = -111.502 SP3_TS5 costs 0 real_cost = -114.839 SP3_TS4-scwrl costs 0 real_cost = -79.2643 SP3_TS4 costs 0 real_cost = -85.1209 SP3_TS3-scwrl costs 0 real_cost = -186.002 SP3_TS3 costs 0 real_cost = -188.729 SP3_TS2-scwrl costs 0 real_cost = -88.3605 SP3_TS2 costs 0 real_cost = -89.5988 SP3_TS1-scwrl costs 0 real_cost = -91.5922 SP3_TS1 costs 0 real_cost = 134.503 SAM_T06_server_TS5-scwrl costs 0 real_cost = -14.2021 SAM_T06_server_TS5 costs 0 real_cost = -51.0566 SAM_T06_server_TS4-scwrl costs 0 real_cost = -80.1705 SAM_T06_server_TS4 costs 0 real_cost = -123.826 SAM_T06_server_TS3-scwrl costs 0 real_cost = -20.0296 SAM_T06_server_TS3 costs 0 real_cost = -79.8663 SAM_T06_server_TS2-scwrl costs 0 real_cost = -259.625 SAM_T06_server_TS2 costs 0 real_cost = -275.711 SAM_T06_server_TS1-scwrl costs 0 real_cost = -100.086 SAM_T06_server_TS1 costs 0 real_cost = -96.8256 SAM-T99_AL5-scwrl costs 0 real_cost = -86.4855 SAM-T99_AL5 costs 0 real_cost = 104.535 SAM-T99_AL4-scwrl costs 0 real_cost = -90.566 SAM-T99_AL4 costs 0 real_cost = 104.174 SAM-T99_AL3-scwrl costs 0 real_cost = -228.392 SAM-T99_AL3 costs 0 real_cost = -43.031 SAM-T99_AL2-scwrl costs 0 real_cost = -244.473 SAM-T99_AL2 costs 0 real_cost = -75.3233 SAM-T99_AL1-scwrl costs 0 real_cost = -228.821 SAM-T99_AL1 costs 0 real_cost = -65.7824 SAM-T02_AL5-scwrl costs 0 real_cost = -132.545 SAM-T02_AL5 costs 0 real_cost = 37.0001 SAM-T02_AL4-scwrl costs 0 real_cost = -269.737 SAM-T02_AL4 costs 0 real_cost = -95.3358 SAM-T02_AL3-scwrl costs 0 real_cost = -118.61 SAM-T02_AL3 costs 0 real_cost = 104.115 SAM-T02_AL2-scwrl costs 0 real_cost = -23.6192 SAM-T02_AL2 costs 0 real_cost = 184.779 SAM-T02_AL1-scwrl costs 0 real_cost = -115.642 SAM-T02_AL1 costs 0 real_cost = 104.363 ROKKY_TS5-scwrl costs 0 real_cost = -55.553 ROKKY_TS5 costs 0 real_cost = -63.0754 ROKKY_TS4-scwrl costs 0 real_cost = -71.9102 ROKKY_TS4 costs 0 real_cost = -72.4818 ROKKY_TS3-scwrl costs 0 real_cost = -105.216 ROKKY_TS3 costs 0 real_cost = -104.416 ROKKY_TS2-scwrl costs 0 real_cost = -230.954 ROKKY_TS2 costs 0 real_cost = -228.42 ROKKY_TS1-scwrl costs 0 real_cost = -228.681 ROKKY_TS1 costs 0 real_cost = -230.438 ROBETTA_TS5-scwrl costs 0 real_cost = -198.275 ROBETTA_TS5 costs 0 real_cost = -195.434 ROBETTA_TS4-scwrl costs 0 real_cost = -238.236 ROBETTA_TS4 costs 0 real_cost = -235.092 ROBETTA_TS3-scwrl costs 0 real_cost = -231.089 ROBETTA_TS3 costs 0 real_cost = -231.729 ROBETTA_TS2-scwrl costs 0 real_cost = -215.932 ROBETTA_TS2 costs 0 real_cost = -217.334 ROBETTA_TS1-scwrl costs 0 real_cost = -213.101 ROBETTA_TS1 costs 0 real_cost = -217.321 RAPTOR_TS5-scwrl costs 0 real_cost = -111.661 RAPTOR_TS5 costs 0 real_cost = -116.987 RAPTOR_TS4-scwrl costs 0 real_cost = -67.2977 RAPTOR_TS4 costs 0 real_cost = -68.8802 RAPTOR_TS3-scwrl costs 0 real_cost = -115.949 RAPTOR_TS3 costs 0 real_cost = -113.391 RAPTOR_TS2-scwrl costs 0 real_cost = -218.221 RAPTOR_TS2 costs 0 real_cost = -224.322 RAPTOR_TS1-scwrl costs 0 real_cost = -252.678 RAPTOR_TS1 costs 0 real_cost = -252.591 RAPTORESS_TS5-scwrl costs 0 real_cost = -103.907 RAPTORESS_TS5 costs 0 real_cost = -100.785 RAPTORESS_TS4-scwrl costs 0 real_cost = -79.9895 RAPTORESS_TS4 costs 0 real_cost = -83.9743 RAPTORESS_TS3-scwrl costs 0 real_cost = -109.351 RAPTORESS_TS3 costs 0 real_cost = -108.375 RAPTORESS_TS2-scwrl costs 0 real_cost = -219.955 RAPTORESS_TS2 costs 0 real_cost = -216.581 RAPTORESS_TS1-scwrl costs 0 real_cost = -232.202 RAPTORESS_TS1 costs 0 real_cost = -233.865 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -262.524 RAPTOR-ACE_TS5 costs 0 real_cost = -264.71 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -115.158 RAPTOR-ACE_TS4 costs 0 real_cost = -115.777 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -150.486 RAPTOR-ACE_TS3 costs 0 real_cost = -148.095 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -256.487 RAPTOR-ACE_TS2 costs 0 real_cost = -261.894 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -262.524 RAPTOR-ACE_TS1 costs 0 real_cost = -264.71 Pmodeller6_TS5-scwrl costs 0 real_cost = -144.531 Pmodeller6_TS5 costs 0 real_cost = -149.452 Pmodeller6_TS4-scwrl costs 0 real_cost = -144.531 Pmodeller6_TS4 costs 0 real_cost = -149.452 Pmodeller6_TS3-scwrl costs 0 real_cost = -144.531 Pmodeller6_TS3 costs 0 real_cost = -149.452 Pmodeller6_TS2-scwrl costs 0 real_cost = -92.9385 Pmodeller6_TS2 costs 0 real_cost = -95.2942 Pmodeller6_TS1-scwrl costs 0 real_cost = -146.998 Pmodeller6_TS1 costs 0 real_cost = -150.234 Phyre-2_TS5-scwrl costs 0 real_cost = -119.633 Phyre-2_TS5 costs 0 real_cost = -130.653 Phyre-2_TS4-scwrl costs 0 real_cost = -103.385 Phyre-2_TS4 costs 0 real_cost = -113.566 Phyre-2_TS3-scwrl costs 0 real_cost = -119.976 Phyre-2_TS3 costs 0 real_cost = -130.243 Phyre-2_TS2-scwrl costs 0 real_cost = -88.0773 Phyre-2_TS2 costs 0 real_cost = -95.5053 Phyre-2_TS1-scwrl costs 0 real_cost = -119.225 Phyre-2_TS1 costs 0 real_cost = 36.9158 Phyre-1_TS1-scwrl costs 0 real_cost = 1.97431 Phyre-1_TS1 costs 0 real_cost = -4.25567 Pcons6_TS5-scwrl costs 0 real_cost = -275.83 Pcons6_TS5 costs 0 real_cost = -277.762 Pcons6_TS4-scwrl costs 0 real_cost = -236.261 Pcons6_TS4 costs 0 real_cost = -244.464 Pcons6_TS3-scwrl costs 0 real_cost = -275.83 Pcons6_TS3 costs 0 real_cost = -277.762 Pcons6_TS2-scwrl costs 0 real_cost = -275.83 Pcons6_TS2 costs 0 real_cost = -277.762 Pcons6_TS1-scwrl costs 0 real_cost = -275.83 Pcons6_TS1 costs 0 real_cost = -277.762 PROTINFO_TS5-scwrl costs 0 real_cost = 6.56567 PROTINFO_TS5 costs 0 real_cost = 7.53888 PROTINFO_TS4-scwrl costs 0 real_cost = 2.85551 PROTINFO_TS4 costs 0 real_cost = 1.61619 PROTINFO_TS3-scwrl costs 0 real_cost = 173.273 PROTINFO_TS3 costs 0 real_cost = 174.007 PROTINFO_TS2-scwrl costs 0 real_cost = 153.626 PROTINFO_TS2 costs 0 real_cost = 155.158 PROTINFO_TS1-scwrl costs 0 real_cost = 46.4876 PROTINFO_TS1 costs 0 real_cost = 46.8129 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -13.1314 PROTINFO-AB_TS5 costs 0 real_cost = -13.0141 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 54.3472 PROTINFO-AB_TS4 costs 0 real_cost = 55.8648 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 54.8579 PROTINFO-AB_TS3 costs 0 real_cost = 60.9734 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 2.53619 PROTINFO-AB_TS2 costs 0 real_cost = 7.04192 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 108.577 PROTINFO-AB_TS1 costs 0 real_cost = 109.223 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -235.663 NN_PUT_lab_TS1 costs 0 real_cost = -249.294 MetaTasser_TS5-scwrl costs 0 real_cost = 268.174 MetaTasser_TS5 costs 0 real_cost = 265.563 MetaTasser_TS4-scwrl costs 0 real_cost = 73.3087 MetaTasser_TS4 costs 0 real_cost = 79.0493 MetaTasser_TS3-scwrl costs 0 real_cost = 138.025 MetaTasser_TS3 costs 0 real_cost = 138.733 MetaTasser_TS2-scwrl costs 0 real_cost = 121.42 MetaTasser_TS2 costs 0 real_cost = 113.761 MetaTasser_TS1-scwrl costs 0 real_cost = 25.8529 MetaTasser_TS1 costs 0 real_cost = 31.1533 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -127.836 Ma-OPUS-server_TS5 costs 0 real_cost = -124.398 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -108.811 Ma-OPUS-server_TS4 costs 0 real_cost = -109.013 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -117.777 Ma-OPUS-server_TS3 costs 0 real_cost = -121.418 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -119.119 Ma-OPUS-server_TS2 costs 0 real_cost = -118.745 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -265.021 Ma-OPUS-server_TS1 costs 0 real_cost = -269.942 LOOPP_TS5-scwrl costs 0 real_cost = -65.4837 LOOPP_TS5 costs 0 real_cost = -71.0887 LOOPP_TS4-scwrl costs 0 real_cost = -91.6903 LOOPP_TS4 costs 0 real_cost = -93.0313 LOOPP_TS3-scwrl costs 0 real_cost = -98.0149 LOOPP_TS3 costs 0 real_cost = -95.4554 LOOPP_TS2-scwrl costs 0 real_cost = -236.665 LOOPP_TS2 costs 0 real_cost = -240.243 LOOPP_TS1-scwrl costs 0 real_cost = -248.644 LOOPP_TS1 costs 0 real_cost = -254.03 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 21.3041 Huber-Torda-Server_TS5 costs 0 real_cost = 161.848 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -80.5795 Huber-Torda-Server_TS4 costs 0 real_cost = 81.2174 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -88.0154 Huber-Torda-Server_TS3 costs 0 real_cost = 41.7689 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -118.776 Huber-Torda-Server_TS2 costs 0 real_cost = 19.5896 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -278.677 Huber-Torda-Server_TS1 costs 0 real_cost = -147.333 HHpred3_TS1-scwrl costs 0 real_cost = -77.4977 HHpred3_TS1 costs 0 real_cost = -81.5882 HHpred2_TS1-scwrl costs 0 real_cost = -77.4977 HHpred2_TS1 costs 0 real_cost = -81.5882 HHpred1_TS1-scwrl costs 0 real_cost = -259.296 HHpred1_TS1 costs 0 real_cost = -262.298 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -211.527 GeneSilicoMetaServer_TS4 costs 0 real_cost = -214.785 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -104.792 GeneSilicoMetaServer_TS2 costs 0 real_cost = -105.018 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -140.531 GeneSilicoMetaServer_TS1 costs 0 real_cost = -140.842 Frankenstein_TS1-scwrl costs 0 real_cost = -209.956 Frankenstein_TS1 costs 0 real_cost = -207.115 FUNCTION_TS5-scwrl costs 0 real_cost = -104.525 FUNCTION_TS5 costs 0 real_cost = -108.402 FUNCTION_TS4-scwrl costs 0 real_cost = -204.262 FUNCTION_TS4 costs 0 real_cost = -220.269 FUNCTION_TS3-scwrl costs 0 real_cost = -225.806 FUNCTION_TS3 costs 0 real_cost = -240.605 FUNCTION_TS2-scwrl costs 0 real_cost = -221.165 FUNCTION_TS2 costs 0 real_cost = -237.132 FUNCTION_TS1-scwrl costs 0 real_cost = -216.683 FUNCTION_TS1 costs 0 real_cost = -228.555 FUGUE_AL5-scwrl costs 0 real_cost = 20.4706 FUGUE_AL5 costs 0 real_cost = 238.15 FUGUE_AL4-scwrl costs 0 real_cost = 55.9025 FUGUE_AL4 costs 0 real_cost = 254.24 FUGUE_AL3-scwrl costs 0 real_cost = 70.0628 FUGUE_AL3 costs 0 real_cost = 274.228 FUGUE_AL2-scwrl costs 0 real_cost = 267.119 FUGUE_AL2 costs 0 real_cost = 381.328 FUGUE_AL1-scwrl costs 0 real_cost = -45.2475 FUGUE_AL1 costs 0 real_cost = 143.621 FUGMOD_TS5-scwrl costs 0 real_cost = 258.508 FUGMOD_TS5 costs 0 real_cost = 259.003 FUGMOD_TS4-scwrl costs 0 real_cost = -1.56826 FUGMOD_TS4 costs 0 real_cost = -0.0263701 FUGMOD_TS3-scwrl costs 0 real_cost = 0.223377 FUGMOD_TS3 costs 0 real_cost = -0.979855 FUGMOD_TS2-scwrl costs 0 real_cost = 24.4067 FUGMOD_TS2 costs 0 real_cost = 26.431 FUGMOD_TS1-scwrl costs 0 real_cost = 92.487 FUGMOD_TS1 costs 0 real_cost = 93.5597 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 336.674 FPSOLVER-SERVER_TS1 costs 0 real_cost = 347.13 FORTE2_AL5-scwrl costs 0 real_cost = -86.1177 FORTE2_AL5 costs 0 real_cost = 107.711 FORTE2_AL4-scwrl costs 0 real_cost = -56.0665 FORTE2_AL4 costs 0 real_cost = 115.953 FORTE2_AL3-scwrl costs 0 real_cost = 2.23306 FORTE2_AL3 costs 0 real_cost = 192.212 FORTE2_AL2-scwrl costs 0 real_cost = -76.5797 FORTE2_AL2 costs 0 real_cost = 132.785 FORTE2_AL1-scwrl costs 0 real_cost = -92.9389 FORTE2_AL1 costs 0 real_cost = 125.913 FORTE1_AL5-scwrl costs 0 real_cost = 6.69303 FORTE1_AL5 costs 0 real_cost = 212.679 FORTE1_AL4-scwrl costs 0 real_cost = -130.207 FORTE1_AL4 costs 0 real_cost = 45.6941 FORTE1_AL3-scwrl costs 0 real_cost = -92.1447 FORTE1_AL3 costs 0 real_cost = 126.717 FORTE1_AL2-scwrl costs 0 real_cost = -95.3447 FORTE1_AL2 costs 0 real_cost = 103.598 FORTE1_AL1-scwrl costs 0 real_cost = -76.9227 FORTE1_AL1 costs 0 real_cost = 132.785 FOLDpro_TS5-scwrl costs 0 real_cost = 69.2274 FOLDpro_TS5 costs 0 real_cost = 66.5764 FOLDpro_TS4-scwrl costs 0 real_cost = 11.7012 FOLDpro_TS4 costs 0 real_cost = 11.542 FOLDpro_TS3-scwrl costs 0 real_cost = 87.8867 FOLDpro_TS3 costs 0 real_cost = 98.9132 FOLDpro_TS2-scwrl costs 0 real_cost = 53.0522 FOLDpro_TS2 costs 0 real_cost = 56.6723 FOLDpro_TS1-scwrl costs 0 real_cost = -208.009 FOLDpro_TS1 costs 0 real_cost = -211.049 FAMS_TS5-scwrl costs 0 real_cost = -264.019 FAMS_TS5 costs 0 real_cost = -277.668 FAMS_TS4-scwrl costs 0 real_cost = -269.006 FAMS_TS4 costs 0 real_cost = -297.058 FAMS_TS3-scwrl costs 0 real_cost = -261.158 FAMS_TS3 costs 0 real_cost = -289.066 FAMS_TS2-scwrl costs 0 real_cost = -261.158 FAMS_TS2 costs 0 real_cost = -289.066 FAMS_TS1-scwrl costs 0 real_cost = -223.743 FAMS_TS1 costs 0 real_cost = -233.117 FAMSD_TS5-scwrl costs 0 real_cost = -261.158 FAMSD_TS5 costs 0 real_cost = -289.066 FAMSD_TS4-scwrl costs 0 real_cost = -257.897 FAMSD_TS4 costs 0 real_cost = -276.426 FAMSD_TS3-scwrl costs 0 real_cost = -239.403 FAMSD_TS3 costs 0 real_cost = -263.086 FAMSD_TS2-scwrl costs 0 real_cost = -257.545 FAMSD_TS2 costs 0 real_cost = -273.365 FAMSD_TS1-scwrl costs 0 real_cost = -198.327 FAMSD_TS1 costs 0 real_cost = -210.376 Distill_TS5-scwrl costs 0 real_cost = 505.942 Distill_TS4-scwrl costs 0 real_cost = 503.841 Distill_TS3-scwrl costs 0 real_cost = 497.544 Distill_TS2-scwrl costs 0 real_cost = 503.895 Distill_TS1-scwrl costs 0 real_cost = 496.697 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -110.317 CaspIta-FOX_TS5 costs 0 real_cost = -115.041 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -90.6138 CaspIta-FOX_TS4 costs 0 real_cost = -97.7259 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -101.982 CaspIta-FOX_TS3 costs 0 real_cost = -106.933 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -237.281 CaspIta-FOX_TS2 costs 0 real_cost = -252.424 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -274.854 CaspIta-FOX_TS1 costs 0 real_cost = -298.83 CIRCLE_TS5-scwrl costs 0 real_cost = -257.897 CIRCLE_TS5 costs 0 real_cost = -276.426 CIRCLE_TS4-scwrl costs 0 real_cost = -265.454 CIRCLE_TS4 costs 0 real_cost = -282.934 CIRCLE_TS3-scwrl costs 0 real_cost = -261.158 CIRCLE_TS3 costs 0 real_cost = -289.066 CIRCLE_TS2-scwrl costs 0 real_cost = -269.006 CIRCLE_TS2 costs 0 real_cost = -297.058 CIRCLE_TS1-scwrl costs 0 real_cost = -264.019 CIRCLE_TS1 costs 0 real_cost = -277.668 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -67.0177 Bilab-ENABLE_TS5 costs 0 real_cost = -67.04 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -110.128 Bilab-ENABLE_TS4 costs 0 real_cost = -110.128 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -53.4291 Bilab-ENABLE_TS3 costs 0 real_cost = -53.4175 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -104.471 Bilab-ENABLE_TS2 costs 0 real_cost = -104.471 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -209.202 Bilab-ENABLE_TS1 costs 0 real_cost = -209.202 BayesHH_TS1-scwrl costs 0 real_cost = -77.818 BayesHH_TS1 costs 0 real_cost = -82.7053 ABIpro_TS5-scwrl costs 0 real_cost = 259.019 ABIpro_TS5 costs 0 real_cost = 258.261 ABIpro_TS4-scwrl costs 0 real_cost = 301.715 ABIpro_TS4 costs 0 real_cost = 301.863 ABIpro_TS3-scwrl costs 0 real_cost = 283.97 ABIpro_TS3 costs 0 real_cost = 283.247 ABIpro_TS2-scwrl costs 0 real_cost = 249.114 ABIpro_TS2 costs 0 real_cost = 249.247 ABIpro_TS1-scwrl costs 0 real_cost = 275.159 ABIpro_TS1 costs 0 real_cost = 275.159 3Dpro_TS5-scwrl costs 0 real_cost = 221.334 3Dpro_TS5 costs 0 real_cost = 228.095 3Dpro_TS4-scwrl costs 0 real_cost = 13.293 3Dpro_TS4 costs 0 real_cost = 11.1737 3Dpro_TS3-scwrl costs 0 real_cost = 159.447 3Dpro_TS3 costs 0 real_cost = 154.521 3Dpro_TS2-scwrl costs 0 real_cost = -23.0051 3Dpro_TS2 costs 0 real_cost = -24.1639 3Dpro_TS1-scwrl costs 0 real_cost = -197.232 3Dpro_TS1 costs 0 real_cost = -207.729 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -64.2987 3D-JIGSAW_TS5 costs 0 real_cost = -55.3278 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -198.571 3D-JIGSAW_TS4 costs 0 real_cost = -196.037 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -237.229 3D-JIGSAW_TS3 costs 0 real_cost = -223.846 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -235.266 3D-JIGSAW_TS2 costs 0 real_cost = -231.232 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -243.775 3D-JIGSAW_TS1 costs 0 real_cost = -236.349 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -209.913 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -192.63 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -97.8084 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -103.062 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -197.924 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -189.843 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -157.409 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -160.343 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -150.268 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -143.122 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -183.501 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -184.642 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -130.199 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -133.817 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -245.509 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -247.867 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -216.791 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -220.126 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -201.139 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -204.344 T0291.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -255.867 T0291.try4-opt2.pdb.gz costs 0 real_cost = -250.71 T0291.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -247.748 T0291.try4-opt1.pdb.gz costs 0 real_cost = -249.849 T0291.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -252.51 T0291.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -254.245 T0291.try3-opt2.pdb.gz costs 0 real_cost = -251.401 T0291.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -250.037 T0291.try3-opt1.pdb.gz costs 0 real_cost = -255.073 T0291.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -255.672 T0291.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -254.059 T0291.try2-opt2.pdb.gz costs 0 real_cost = -253.061 T0291.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -251.418 T0291.try2-opt1.pdb.gz costs 0 real_cost = -255.132 T0291.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -253.572 T0291.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -208.165 T0291.try1-opt2.pdb.gz costs 0 real_cost = -203.018 T0291.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -203.03 T0291.try1-opt1.pdb.gz costs 0 real_cost = -206.037 T0291.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -208.121 ../model5.ts-submitted costs 0 real_cost = -0.784025 ../model4.ts-submitted costs 0 real_cost = -140.85 ../model3.ts-submitted costs 0 real_cost = -202.934 ../model2.ts-submitted costs 0 real_cost = -255.857 ../model1.ts-submitted costs 0 real_cost = -250.694 align5 costs 0 real_cost = -51.4233 align4 costs 0 real_cost = -139.409 align3 costs 0 real_cost = -84.1392 align2 costs 0 real_cost = -3.7506 align1 costs 0 real_cost = -131.986 T0291.try1-opt2.pdb costs 0 real_cost = -203.022 model5-scwrl costs 0 real_cost = 26.2394 model5.ts-submitted costs 0 real_cost = -0.784025 model4-scwrl costs 0 real_cost = -125.817 model4.ts-submitted costs 0 real_cost = -140.85 model3-scwrl costs 0 real_cost = -204.162 model3.ts-submitted costs 0 real_cost = -202.934 model2-scwrl costs 0 real_cost = -252.006 model2.ts-submitted costs 0 real_cost = -255.857 model1-scwrl costs 0 real_cost = -252.014 model1.ts-submitted costs 0 real_cost = -250.699 2gsfA costs 0 real_cost = -840.6 # command:CPU_time= 2656.08 sec, elapsed time= 3449.91 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty