# This file is the result of combining several RDB files, specifically # T0291.t06.dssp-ebghstl.rdb (weight 1.53986) # T0291.t06.stride-ebghtl.rdb (weight 1.24869) # T0291.t06.str2.rdb (weight 1.54758) # T0291.t06.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0291.t06.dssp-ebghstl.rdb # ============================================ # TARGET T0291 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0291.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13482 # # ============================================ # Comments from T0291.t06.stride-ebghtl.rdb # ============================================ # TARGET T0291 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0291.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13482 # # ============================================ # Comments from T0291.t06.str2.rdb # ============================================ # TARGET T0291 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0291.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13482 # # ============================================ # Comments from T0291.t06.alpha.rdb # ============================================ # TARGET T0291 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0291.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13482 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 T 0.0702 0.0348 0.8950 2 Y 0.1289 0.0409 0.8302 3 V 0.1608 0.0415 0.7977 4 D 0.1105 0.0264 0.8631 5 P 0.0554 0.2009 0.7437 6 H 0.0838 0.1832 0.7330 7 T 0.1514 0.1595 0.6891 8 Y 0.1358 0.1171 0.7471 9 E 0.1325 0.0946 0.7729 10 D 0.1065 0.0408 0.8527 11 P 0.0450 0.2301 0.7249 12 T 0.0627 0.2928 0.6445 13 Q 0.0940 0.3591 0.5469 14 A 0.1507 0.3457 0.5036 15 V 0.2297 0.3231 0.4473 16 H 0.2400 0.3146 0.4454 17 E 0.2095 0.4377 0.3528 18 F 0.2077 0.3880 0.4043 19 A 0.2343 0.3262 0.4395 20 K 0.3514 0.2647 0.3838 21 E 0.4022 0.2556 0.3422 22 L 0.4197 0.1498 0.4305 23 D 0.2654 0.0752 0.6594 24 A 0.0933 0.3706 0.5362 25 T 0.0578 0.2778 0.6644 26 N 0.1109 0.1557 0.7335 27 I 0.4461 0.0212 0.5327 28 S 0.6912 0.0136 0.2953 29 I 0.7540 0.0417 0.2042 30 D 0.7030 0.0631 0.2340 31 K 0.7379 0.0579 0.2042 32 V 0.8123 0.0342 0.1535 33 V 0.7204 0.0413 0.2383 34 G 0.5078 0.0348 0.4574 35 A 0.3857 0.0594 0.5548 36 G 0.2967 0.0552 0.6481 37 E 0.2856 0.0741 0.6403 38 F 0.3983 0.0547 0.5469 39 G 0.5436 0.0317 0.4247 40 E 0.8281 0.0145 0.1574 41 V 0.9010 0.0080 0.0910 42 C 0.8798 0.0146 0.1056 43 S 0.9043 0.0063 0.0894 44 G 0.8961 0.0061 0.0978 45 R 0.9045 0.0061 0.0894 46 L 0.8730 0.0069 0.1202 47 K 0.7556 0.0128 0.2316 48 L 0.5112 0.0136 0.4751 49 P 0.2245 0.0354 0.7401 50 S 0.0732 0.1017 0.8251 51 K 0.0632 0.1423 0.7945 52 K 0.0669 0.0591 0.8740 53 E 0.1425 0.0279 0.8297 54 I 0.5675 0.0077 0.4248 55 S 0.8882 0.0033 0.1085 56 V 0.9186 0.0038 0.0775 57 A 0.9287 0.0034 0.0679 58 I 0.9232 0.0033 0.0735 59 K 0.9069 0.0042 0.0889 60 T 0.8862 0.0052 0.1085 61 L 0.6771 0.0171 0.3058 62 K 0.3510 0.0353 0.6138 63 V 0.0882 0.2380 0.6738 64 G 0.0574 0.1798 0.7628 65 Y 0.0760 0.1744 0.7496 66 T 0.0679 0.2004 0.7318 67 E 0.0166 0.7419 0.2415 68 K 0.0136 0.7854 0.2011 69 Q 0.0153 0.8203 0.1644 70 R 0.0083 0.8983 0.0933 71 R 0.0064 0.9261 0.0675 72 D 0.0058 0.9295 0.0647 73 F 0.0049 0.9513 0.0439 74 L 0.0047 0.9557 0.0395 75 G 0.0047 0.9558 0.0395 76 E 0.0047 0.9587 0.0366 77 A 0.0047 0.9587 0.0366 78 S 0.0048 0.9554 0.0398 79 I 0.0049 0.9468 0.0483 80 M 0.0061 0.9131 0.0808 81 G 0.0081 0.7805 0.2115 82 Q 0.0117 0.6261 0.3622 83 F 0.0695 0.2566 0.6739 84 D 0.0554 0.0946 0.8500 85 H 0.0771 0.0498 0.8731 86 P 0.0177 0.1873 0.7949 87 N 0.0497 0.1329 0.8174 88 I 0.4213 0.1308 0.4479 89 I 0.6634 0.0621 0.2745 90 R 0.8251 0.0371 0.1378 91 L 0.8347 0.0483 0.1170 92 E 0.7651 0.0656 0.1693 93 G 0.7520 0.0548 0.1932 94 V 0.8130 0.0438 0.1431 95 V 0.8292 0.0389 0.1319 96 T 0.7097 0.0407 0.2495 97 K 0.4179 0.0484 0.5337 98 S 0.0837 0.0707 0.8456 99 K 0.1289 0.0224 0.8487 100 P 0.3014 0.0107 0.6879 101 V 0.8591 0.0041 0.1368 102 M 0.9276 0.0034 0.0689 103 I 0.9320 0.0033 0.0647 104 V 0.9256 0.0034 0.0710 105 T 0.8938 0.0052 0.1010 106 E 0.7900 0.0132 0.1968 107 Y 0.6001 0.0294 0.3705 108 M 0.1963 0.0300 0.7737 109 E 0.0726 0.0869 0.8405 110 N 0.0517 0.0345 0.9138 111 G 0.0733 0.0241 0.9026 112 S 0.1280 0.0166 0.8553 113 L 0.0114 0.8998 0.0888 114 D 0.0048 0.9441 0.0510 115 S 0.0048 0.9474 0.0478 116 F 0.0063 0.9426 0.0511 117 L 0.0141 0.9128 0.0731 118 R 0.0167 0.8325 0.1508 119 K 0.0181 0.6763 0.3056 120 H 0.0517 0.2799 0.6683 121 D 0.0293 0.0766 0.8941 122 A 0.0700 0.0576 0.8724 123 Q 0.1512 0.0486 0.8003 124 F 0.1463 0.0202 0.8335 125 T 0.0824 0.0231 0.8945 126 V 0.0047 0.9558 0.0395 127 I 0.0047 0.9600 0.0353 128 Q 0.0047 0.9602 0.0352 129 L 0.0046 0.9613 0.0340 130 V 0.0047 0.9610 0.0343 131 G 0.0046 0.9611 0.0343 132 M 0.0046 0.9612 0.0342 133 L 0.0047 0.9611 0.0343 134 R 0.0046 0.9612 0.0342 135 G 0.0047 0.9604 0.0350 136 I 0.0047 0.9601 0.0352 137 A 0.0047 0.9590 0.0364 138 S 0.0047 0.9557 0.0396 139 G 0.0047 0.9545 0.0408 140 M 0.0047 0.9567 0.0386 141 K 0.0047 0.9552 0.0401 142 Y 0.0049 0.9456 0.0496 143 L 0.0055 0.9226 0.0719 144 S 0.0073 0.8535 0.1392 145 D 0.0088 0.7382 0.2530 146 M 0.0473 0.2465 0.7061 147 G 0.0403 0.0248 0.9350 148 Y 0.2976 0.0307 0.6717 149 V 0.6164 0.0387 0.3449 150 H 0.4851 0.0928 0.4221 151 R 0.2673 0.1397 0.5929 152 D 0.2004 0.1099 0.6897 153 L 0.1827 0.1259 0.6914 154 A 0.1335 0.0965 0.7699 155 A 0.0972 0.3978 0.5050 156 R 0.1294 0.4129 0.4577 157 N 0.2870 0.3406 0.3725 158 I 0.6728 0.0765 0.2507 159 L 0.8289 0.0271 0.1440 160 I 0.7816 0.0301 0.1883 161 N 0.2881 0.0210 0.6909 162 S 0.0402 0.1249 0.8349 163 N 0.0522 0.0322 0.9156 164 L 0.1409 0.0268 0.8323 165 V 0.5224 0.0083 0.4693 166 C 0.8609 0.0035 0.1355 167 K 0.8812 0.0056 0.1132 168 V 0.8561 0.0145 0.1295 169 S 0.7147 0.0247 0.2606 170 D 0.5107 0.0470 0.4423 171 F 0.2527 0.1194 0.6280 172 G 0.1759 0.1490 0.6751 173 L 0.2683 0.2598 0.4719 174 G 0.3733 0.2789 0.3478 175 R 0.4687 0.2729 0.2584 176 V 0.5146 0.2265 0.2589 177 L 0.4347 0.1631 0.4022 178 E 0.2637 0.1126 0.6237 179 D 0.1469 0.0916 0.7615 180 D 0.1072 0.0356 0.8572 181 P 0.0322 0.2394 0.7284 182 E 0.0637 0.2533 0.6830 183 A 0.1740 0.2587 0.5672 184 A 0.3460 0.1768 0.4772 185 Y 0.4853 0.1173 0.3974 186 T 0.4530 0.1027 0.4443 187 T 0.3825 0.1179 0.4996 188 R 0.2964 0.0951 0.6085 189 G 0.2246 0.0567 0.7187 190 G 0.3476 0.0460 0.6064 191 K 0.5466 0.0395 0.4139 192 I 0.4936 0.0203 0.4861 193 P 0.3300 0.0347 0.6353 194 I 0.0950 0.4780 0.4270 195 R 0.0978 0.4690 0.4332 196 W 0.1183 0.4354 0.4464 197 T 0.1613 0.1763 0.6624 198 S 0.1126 0.1314 0.7560 199 P 0.0345 0.7169 0.2486 200 E 0.0595 0.8169 0.1236 201 A 0.0714 0.8111 0.1175 202 I 0.0865 0.7565 0.1570 203 A 0.0583 0.5824 0.3593 204 Y 0.0454 0.2480 0.7066 205 R 0.0943 0.0838 0.8219 206 K 0.1661 0.0734 0.7605 207 F 0.1611 0.0586 0.7803 208 T 0.0915 0.0421 0.8664 209 S 0.0371 0.4446 0.5183 210 A 0.0234 0.7083 0.2683 211 S 0.0405 0.7524 0.2072 212 D 0.0336 0.7913 0.1751 213 V 0.0201 0.9018 0.0781 214 W 0.0095 0.9176 0.0729 215 S 0.0078 0.9389 0.0534 216 Y 0.0064 0.9458 0.0478 217 G 0.0048 0.9553 0.0398 218 I 0.0048 0.9580 0.0372 219 V 0.0047 0.9588 0.0365 220 L 0.0047 0.9596 0.0356 221 W 0.0052 0.9576 0.0372 222 E 0.0057 0.9558 0.0386 223 V 0.0053 0.9513 0.0434 224 M 0.0078 0.9237 0.0685 225 S 0.0223 0.7889 0.1888 226 Y 0.0441 0.3654 0.5905 227 G 0.0384 0.0398 0.9218 228 E 0.0823 0.0224 0.8953 229 R 0.1281 0.0250 0.8469 230 P 0.1294 0.0819 0.7887 231 Y 0.1060 0.1556 0.7384 232 W 0.0795 0.2024 0.7181 233 E 0.0652 0.1395 0.7953 234 M 0.0931 0.0571 0.8498 235 S 0.0717 0.0356 0.8927 236 N 0.0130 0.8089 0.1781 237 Q 0.0062 0.9350 0.0588 238 D 0.0068 0.9433 0.0499 239 V 0.0060 0.9516 0.0424 240 I 0.0066 0.9498 0.0436 241 K 0.0082 0.9430 0.0488 242 A 0.0090 0.9298 0.0611 243 V 0.0193 0.8956 0.0852 244 D 0.0216 0.8172 0.1612 245 E 0.0398 0.4497 0.5105 246 G 0.0303 0.1720 0.7977 247 Y 0.0996 0.0783 0.8221 248 R 0.1345 0.0370 0.8285 249 L 0.1071 0.0156 0.8773 250 P 0.0677 0.0143 0.9181 251 P 0.0641 0.0174 0.9184 252 P 0.0560 0.0608 0.8833 253 M 0.0291 0.2143 0.7567 254 D 0.0387 0.2114 0.7498 255 C 0.0644 0.0533 0.8823 256 P 0.0518 0.1647 0.7835 257 A 0.0050 0.9251 0.0699 258 A 0.0048 0.9461 0.0491 259 L 0.0048 0.9570 0.0382 260 Y 0.0047 0.9608 0.0345 261 Q 0.0046 0.9612 0.0342 262 L 0.0047 0.9601 0.0353 263 M 0.0047 0.9579 0.0374 264 L 0.0048 0.9514 0.0438 265 D 0.0054 0.9289 0.0657 266 C 0.0059 0.8840 0.1100 267 W 0.0129 0.7786 0.2085 268 Q 0.0242 0.6006 0.3751 269 K 0.0494 0.4377 0.5129 270 D 0.0906 0.0516 0.8579 271 R 0.0079 0.5445 0.4476 272 N 0.0131 0.4906 0.4963 273 N 0.0223 0.4841 0.4936 274 R 0.0782 0.0382 0.8835 275 P 0.1351 0.0333 0.8315 276 K 0.1445 0.0392 0.8163 277 F 0.0049 0.9485 0.0466 278 E 0.0047 0.9598 0.0356 279 Q 0.0047 0.9587 0.0366 280 I 0.0047 0.9589 0.0364 281 V 0.0050 0.9552 0.0399 282 S 0.0052 0.9449 0.0499 283 I 0.0053 0.9311 0.0636 284 L 0.0051 0.9403 0.0546 285 D 0.0052 0.9388 0.0560 286 K 0.0059 0.9213 0.0729 287 L 0.0098 0.8815 0.1087 288 I 0.0282 0.7433 0.2285 289 R 0.0353 0.5097 0.4550 290 N 0.0646 0.0696 0.8658 291 P 0.0282 0.1799 0.7920 292 G 0.0379 0.1495 0.8126 293 S 0.1040 0.1845 0.7115 294 L 0.1555 0.1961 0.6484 295 K 0.2496 0.1885 0.5619 296 I 0.3287 0.1487 0.5226 297 I 0.2767 0.1025 0.6208 298 T 0.2137 0.0930 0.6934 299 S 0.1412 0.0855 0.7734 300 A 0.0462 0.4711 0.4828 301 A 0.0495 0.4215 0.5290 302 A 0.0697 0.3523 0.5780 303 R 0.0858 0.0745 0.8397 304 P 0.0521 0.2422 0.7058 305 S 0.0520 0.3255 0.6224 306 N 0.1051 0.3609 0.5340 307 L 0.1795 0.2835 0.5369 308 L 0.2156 0.1961 0.5884 309 L 0.1223 0.1085 0.7692 310 D 0.0523 0.0347 0.9130