# List of top-scoring protein chains for T0291.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 3.76e-47 d.144.1.7 67011 1mqbA 333 2.79e-46 d.144.1.7 91392 1opjA 293 8.92e-45 d.144.1.7 87230 2f4jA 287 1.18e-44 2fo0A 495 1.70e-44 1oplA 537 1.73e-44 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 1opkA 495 1.73e-44 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 1oecA 316 9.82e-44 1fgkA 310 1.67e-43 1fgkA d.144.1.7 41693 1irk 306 3.37e-43 1fmk d.144.1.7 41703 1p14A 306 3.51e-43 d.144.1.7 87660 1y57A 452 4.26e-43 1m7nA 322 4.40e-43 d.144.1.7 78738 1fmk 452 4.69e-43 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1p4oA 322 5.09e-43 d.144.1.7 87775 1jqhA 308 5.81e-43 d.144.1.7 71793 1i44A 306 5.84e-43 1fmk d.144.1.7 61664 2ptk 453 6.27e-43 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24517,40457,41692 2b4sB 306 7.01e-43 1yolA 283 7.36e-43 1kswA 452 7.74e-43 b.34.2.1,d.93.1.1,d.144.1.7 68860,68861,68862 1qcfA 454 9.77e-43 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24498,40490,41680 1lufA 343 1.01e-42 d.144.1.7 78223 1ir3A 306 1.14e-42 1fmk d.144.1.7 41702 1yojA 283 1.21e-42 1mp8A 281 1.78e-42 d.144.1.7 91384 1yi6A 276 2.25e-42 1qpcA 279 2.31e-42 1fgkA d.144.1.7 41685 3lck 271 3.55e-42 1fmk d.144.1.7 41686 1k3aA 299 4.65e-42 d.144.1.7 68098 1qpdA 279 8.32e-42 1fmk d.144.1.7 41687 1rjbA 344 1.60e-41 d.144.1.7 97557 2g15A 318 2.43e-41 1t45A 331 2.57e-41 d.144.1.7 106396 1fvrA 327 2.76e-41 d.144.1.7 60047 1ad5A 438 2.89e-41 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24505,40491,41681 1t46A 313 2.92e-41 d.144.1.7 106397 1xkkA 352 3.00e-41 1pkgA 329 3.12e-41 d.144.1.7 94830 1m14A 333 3.33e-41 d.144.1.7 78367 1u46A 291 3.51e-41 d.144.1.7 107656 1r0pA 312 4.16e-41 d.144.1.7 96734 1sm2A 264 5.62e-41 d.144.1.7 105754 1u54A 291 5.98e-41 d.144.1.7 107675 1k2pA 263 1.05e-40 d.144.1.7 72012 1vr2A 316 2.08e-40 1fgkA d.144.1.7 41701 1y6bA 366 2.20e-40 1ywnA 316 2.79e-40 1bygA 278 5.13e-40 1fmk d.144.1.7 41705 1k9aA 450 5.62e-40 b.34.2.1,d.93.1.1,d.144.1.7 72188,72189,72190 1u59A 287 7.27e-40 d.144.1.7 107681 1xbbA 291 2.92e-39 2b7aA 293 1.93e-37 1yvjA 290 3.33e-36 1uwjA 276 2.46e-32 d.144.1.7 100125 1uwhA 276 2.66e-32 d.144.1.7 100123 2evaA 307 1.46e-30 1zmuA 327 1.87e-24 1y8gA 327 2.19e-24 1zmvA 327 3.20e-24 1u5rA 348 8.19e-24 1muoA 297 1.20e-23 d.144.1.7 85110 1ol5A 282 1.58e-23 d.144.1.7 93310 1mq4A 272 1.59e-23 d.144.1.7 91391 2bmcA 306 1.67e-23 2c6eA 283 1.77e-23 2c6dA 275 2.04e-23 1yhwA 297 3.59e-23 1yhvA 297 3.73e-23 1ol6A 282 3.74e-23 d.144.1.7 93311 1fotA 318 5.67e-23 1cdkA d.144.1.7 59938 1xjdA 345 6.02e-23 2f57A 317 1.26e-22 2fh9A 274 1.27e-22 2c30A 321 3.27e-22 2eueA 275 3.53e-22 2cdzA 303 5.32e-22 2bvaA 292 5.66e-22 2br1A 297 5.79e-22 1ia8A 289 5.80e-22 1ia8A d.144.1.7 62112 1a06 332 1.08e-21 1tkiA d.144.1.7 41634 2bfxA 284 1.57e-21 2bfyA 284 1.89e-21 1t4hA 290 2.82e-21 d.144.1.7 106420 1xh9A 350 1.02e-20 1vywA 309 1.47e-20 d.144.1.7 108922 1mryA 339 1.49e-20 d.144.1.7 91451 1q61A 350 1.49e-20 d.144.1.7 95955 1gzkA 315 1.53e-20 d.144.1.7 83406 1o6lA 337 1.61e-20 d.144.1.7 81092 1s9iA 354 1.63e-20 1o6kA 336 1.63e-20 d.144.1.7 81091 1gznA 335 1.64e-20 d.144.1.7 83407 1cdkA 350 1.68e-20 1cdkA d.144.1.7 41620 1cmkE 351 1.68e-20 1cdkA d.144.1.7 41623 1ctpE 350 1.73e-20 1cdkA d.144.1.7 41622 1s9jA 341 1.73e-20 1h1rA 303 2.24e-20 d.144.1.7 76489 1smhA 350 2.38e-20 d.144.1.7 105757 1oiuA 302 2.39e-20 d.144.1.7 103958 1pkdA 297 2.64e-20 d.144.1.7 88141 1w98A 298 2.65e-20 1qmzA 299 2.65e-20 1hcl d.144.1.7 41604 1gz8A 299 2.71e-20 d.144.1.7 83405 1xh8A 350 2.90e-20 2c1aA 351 2.91e-20 1oitA 299 3.01e-20 d.144.1.7 93075 1jvpP 298 3.02e-20 d.144.1.7 67371 2a19B 284 3.46e-20 1q62A 350 3.49e-20 d.144.1.7 95956 1u7eA 350 3.77e-20 1jbpE 350 3.87e-20 1cdkA d.144.1.7 62849 1ydrE 350 4.10e-20 1cdkA d.144.1.7 41624 1l3rE 350 4.18e-20 d.144.1.7 73552 2erzE 351 4.18e-20 1b6cB 342 4.62e-20 1b6cB d.144.1.7 41673 1apmE 350 5.19e-20 1cdkA d.144.1.7 41628 1giiA 298 5.35e-20 d.144.1.7 65218 1py5A 326 5.43e-20 d.144.1.7 104389 1uu3A 310 5.52e-20 d.144.1.7 99999 2biyA 310 6.48e-20 1vjyA 303 6.65e-20 d.144.1.7 108633 2bdwA 362 7.35e-20 1h1wA 289 7.64e-20 d.144.1.7 83460 1rw8A 301 7.72e-20 1uu9A 286 8.00e-20 d.144.1.7 100002 1z5mA 286 8.79e-20 1o6yA 299 8.89e-20 d.144.1.7 81106 1mruA 311 9.36e-20 d.144.1.7 79425 1sykA 350 1.02e-19 1rdqE 350 1.04e-19 d.144.1.7 97314 1h4lA 292 1.18e-19 d.144.1.7 70871 1unlA 292 1.33e-19 1kobA 387 1.34e-19 1tkiA d.144.1.7 41640 1xo2B 308 1.66e-19 1blxA 326 1.67e-19 1hcl d.144.1.7 41596 1jksA 294 1.99e-19 d.144.1.7 71710 1p4fA 293 2.00e-19 d.144.1.7 104063 1wvwA 278 2.11e-19 1ua2A 346 2.23e-19 1koa 491 2.93e-19 1tkiA b.1.1.4,d.144.1.7 21712,41642 1v0bA 288 3.34e-19 d.144.1.7 100241 1v0oA 288 3.65e-19 d.144.1.7 100243 1ob3A 288 3.68e-19 d.144.1.7 92747 2acxA 576 4.88e-19 1zy4A 303 4.98e-19 1ukhA 369 6.90e-19 d.144.1.7 107913 1wmkA 321 7.09e-19 2etrA 415 7.65e-19 2f2uA 402 8.71e-19 1zrzA 364 1.00e-18 2erk 365 1.63e-18 1hcl d.144.1.7 41655 1jnk 423 1.71e-18 1hcl d.144.1.7 41659 1pmnA 364 1.72e-18 d.144.1.7 94907 2g01A 370 1.75e-18 3erk 364 1.93e-18 1hcl d.144.1.7 41654 1wzyA 368 1.95e-18 1tvoA 368 2.01e-18 1zydA 303 2.69e-18 1gol 364 3.52e-18 1hcl d.144.1.7 41658 1vzoA 355 3.54e-18 d.144.1.7 108971 1pme 380 4.01e-18 1hcl d.144.1.7 41653 1zxeA 303 5.30e-18 2bujA 317 1.01e-17 1ql6A 298 1.44e-17 1cdkA d.144.1.7 41636 2baqA 365 1.49e-17 1phk 298 1.51e-17 1cdkA d.144.1.7 41635 2phkA 277 1.84e-17 1cdkA d.144.1.7 41637 1cm8A 367 2.27e-17 1hcl d.144.1.7 41651 1oz1A 372 2.27e-17 d.144.1.7 93780 2gfsA 372 2.27e-17 1a9u 379 2.27e-17 1hcl d.144.1.7 41646 1yqjA 366 2.27e-17 1ian 366 2.30e-17 1hcl d.144.1.7 41645 2balA 365 2.30e-17 1wbsA 360 2.35e-17 1r3cA 366 2.42e-17 d.144.1.7 96906 1zzlA 351 2.42e-17 1p38 379 2.51e-17 1hcl d.144.1.7 41650 1lewA 360 2.60e-17 d.144.1.7 73875 2ac5A 316 2.69e-17 1omwA 689 3.72e-17 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2b9fA 353 3.87e-17 2b9hA 353 4.03e-17 1yw2A 360 4.24e-17 1ywrA 360 4.24e-17 2ghlA 348 4.40e-17 1yxsA 293 5.38e-17 1nxkA 400 5.74e-17 d.144.1.7 92302 2bikB 313 7.87e-17 1xwsA 313 8.84e-17 1xqzA 300 9.09e-17 1yxtA 293 1.14e-16 1yhsA 273 1.41e-16 2ac3A 316 1.42e-16 1tkiA 321 2.64e-16 1tkiA d.144.1.7 41638 1x8bA 289 4.09e-16 1gngA 378 1.04e-15 d.144.1.7 76239 1r0eA 391 1.11e-15 1q41A 424 1.11e-15 d.144.1.7 95774 1j1bA 420 1.11e-15 d.144.1.7 90758 1pyxA 422 1.11e-15 d.144.1.7 95383 1q5kA 414 1.11e-15 d.144.1.7 104537 1o9uA 350 1.32e-15 d.144.1.7 92691 1uv5A 350 1.32e-15 d.144.1.7 100029 1h8fB 350 1.33e-15 d.144.1.7 65734 1h8fA 352 1.33e-15 d.144.1.7 65733 1z57A 339 2.43e-14 1ymiA 334 3.02e-14 1pjkA 334 1.11e-13 d.144.1.7 88122 1jwhA 337 1.11e-13 d.144.1.7 71913 1na7A 329 1.47e-13 d.144.1.7 91752 1ckiA 317 2.01e-13 1csn d.144.1.7 41660 1om1A 332 8.02e-13 d.144.1.7 93347 1m2pA 325 8.03e-13 d.144.1.7 84758 1m2rA 327 8.03e-13 d.144.1.7 84760 2exeA 357 2.22e-12 2eu9A 355 2.38e-12 1q8yA 373 1.23e-11 d.144.1.7 96234 1howA 373 1.24e-11 1hcl d.144.1.7 41679 2c47A 313 1.26e-11 2chlA 351 2.14e-11 1wbpA 397 1.79e-10 2csn 297 3.38e-10 1csn d.144.1.7 41665 1csn 298 3.56e-10 1csn d.144.1.7 41664 1zarA 282 6.61e-02 1wstA 417 3.05e+00 1cbg 490 6.10e+00 1e70M c.1.8.4 28933 2az0A 73 7.86e+00 1so8A 261 8.74e+00 c.2.1.2 98940 1bcpB 199 8.74e+00 1bcpB b.40.2.1,d.169.1.2 25120,42429 1ptoH 198 8.76e+00 1bcpB b.40.2.1,d.169.1.2 25126,42435 1prtB 196 8.81e+00 1bcpB b.40.2.1,d.169.1.2 25116,42425 2atvA 196 9.07e+00 1u7tA 261 9.45e+00 1je3A 97 9.52e+00 d.68.3.3 71637 2b9zA 74 1.03e+01 2fnaA 357 1.22e+01 1oyuA 175 1.22e+01 d.2.1.3 87616 1zsvA 349 1.50e+01 1rv6V 101 1.62e+01 g.17.1.1 97912 1ao3A 187 1.66e+01 1atzA c.62.1.1 34134 1atzA 189 1.67e+01 1atzA c.62.1.1 34132 2adfA 196 1.79e+01 1fzvA 132 2.02e+01 1vpfA g.17.1.1 60159 1e6wA 260 2.10e+01 1e6wA c.2.1.2 59326 1e3wA 261 2.26e+01 1e6wA c.2.1.2 59207 1e3sA 261 2.26e+01 1e6wA c.2.1.2 59201 1fuiA 591 2.38e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 2apjA 260 2.38e+01 1tafB 70 2.40e+01 1tafB a.22.1.3 16482 1ynpA 317 2.42e+01 1senA 164 2.67e+01 c.47.1.1 105465 2g8fA 142 2.75e+01 1zblA 139 2.80e+01 2g8iA 142 2.81e+01 1zbfA 142 3.04e+01 2bkkA 264 3.27e+01 1l8tA 263 3.48e+01 d.144.1.6 73702 1j7lA 264 3.48e+01 d.144.1.6 62697 1bccE 196 3.55e+01 1rie b.33.1.1,f.23.12.1 24431,43699 1ppjE 196 3.57e+01 b.33.1.1,f.23.12.1 104260,104261 2forA 323 3.60e+01 1w23A 360 3.73e+01 2bigA 361 3.74e+01 1jk0B 345 3.76e+01 a.25.1.2 63143 1okbA 223 3.78e+01 c.18.1.1 93246 110l 164 4.11e+01 1l92 d.2.1.3 36684 1x9nA 688 4.31e+01 2coyA 112 4.44e+01 1ni9A 338 4.61e+01 e.7.1.2 85739 1x75A 132 4.75e+01 1rlf 90 4.77e+01 1lfdA d.15.1.5 37628 1x64A 89 4.80e+01 1txqA 93 4.85e+01 108l 164 4.95e+01 1l92 d.2.1.3 36669 1ohtA 215 4.95e+01 d.118.1.1 87036 2c4vA 167 4.96e+01 1rqiA 300 4.97e+01 a.128.1.1 97742 2c4wA 176 5.15e+01 1rqjA 299 5.17e+01 a.128.1.1 97744 2c57A 180 5.20e+01 1wvfA 520 5.33e+01 1diiA 521 5.34e+01 1qltA d.58.32.1,d.145.1.1 39481,41744 1yzsA 121 5.98e+01 1fstA 182 6.00e+01 1rhoA b.1.18.8 60008 2c0rA 362 6.07e+01 1evyA 366 6.08e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1xknA 355 6.12e+01 1mt5A 537 6.23e+01 c.117.1.1 79430 1xw3A 110 6.37e+01 1cfr 285 6.53e+01 1cfr c.52.1.7 33312 2cs5A 119 6.54e+01 2fg1A 158 6.67e+01 1vquA 374 6.94e+01 2afcA 168 7.11e+01 1xiqA 157 7.40e+01 1zwvA 58 7.41e+01 1hh4D 204 7.57e+01 b.1.18.8 61039 2bfwA 200 7.60e+01 1odkA 235 7.76e+01 c.56.2.1 86863 1thpB 259 7.93e+01 5ptp 1rie 129 7.97e+01 1rie b.33.1.1 24427 2bufA 300 8.38e+01 2cooA 70 8.63e+01 115l 164 8.73e+01 1l92 d.2.1.3 36700 2g39A 497 8.97e+01 2czdA 208 8.97e+01