# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1opjA 293 4.33e-57 d.144.1.7 87230 1jpaA 312 6.22e-57 d.144.1.7 67011 1p4oA 322 7.56e-56 d.144.1.7 87775 1ir3A 306 2.50e-55 1fmk d.144.1.7 41702 1fgkA 310 5.20e-55 1fgkA d.144.1.7 41693 1qpcA 279 2.00e-54 1fgkA d.144.1.7 41685 1t46A 313 2.66e-54 d.144.1.7 106397 1r0pA 312 4.62e-52 d.144.1.7 96734 1fvrA 327 1.15e-51 d.144.1.7 60047 1u59A 287 2.87e-51 d.144.1.7 107681 1mp8A 281 9.77e-51 d.144.1.7 91384 1u46A 291 1.02e-50 d.144.1.7 107656 1xbbA 291 2.52e-50 2b7aA 293 1.31e-49 1ywnA 316 4.60e-49 2evaA 307 2.53e-39 1mq4A 272 4.53e-33 d.144.1.7 91391 1yhvA 297 5.95e-33 2f57A 317 4.72e-32 1f3mC 297 5.28e-32 1hcl d.144.1.7 41677 1xjdA 345 1.82e-31 2c30A 321 3.38e-31 2bfxA 284 1.27e-30 1t4hA 290 3.49e-30 d.144.1.7 106420 1ia8A 289 1.41e-29 1ia8A d.144.1.7 62112 1o6lA 337 1.05e-28 d.144.1.7 81092 1jksA 294 1.44e-28 d.144.1.7 71710 2bdwA 362 1.51e-28 1o6yA 299 2.58e-28 d.144.1.7 81106 2bvaA 292 2.98e-28 1xh9A 350 3.27e-28 1py5A 326 3.39e-28 d.144.1.7 104389 1s9jA 341 3.80e-28 2a19B 284 7.38e-28 1apmE 350 1.11e-27 1cdkA d.144.1.7 41628 1h1wA 289 1.13e-27 d.144.1.7 83460 1uu3A 310 1.41e-27 d.144.1.7 99999 1vjyA 303 1.64e-27 d.144.1.7 108633 1hcl 298 2.12e-27 1hcl d.144.1.7 41593 1p4fA 293 2.38e-27 d.144.1.7 104063 1gz8A 299 2.43e-27 d.144.1.7 83405 1rdqE 350 2.51e-27 d.144.1.7 97314 1blxA 326 2.42e-26 1hcl d.144.1.7 41596 1zrzA 364 3.45e-26 1zy4A 303 4.71e-26 1phk 298 6.34e-26 1cdkA d.144.1.7 41635 1vzoA 355 8.97e-26 d.144.1.7 108971 1tkiA 321 2.22e-25 1tkiA d.144.1.7 41638 1omwA 689 3.42e-25 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2eueA 279 3.55e-25 1xwsA 313 4.01e-25 1tvoA 368 5.66e-25 2bikB 313 6.88e-25 3erk 364 7.40e-25 1hcl d.144.1.7 41654 1pme 380 9.52e-25 1hcl d.144.1.7 41653 1pmnA 364 1.29e-24 d.144.1.7 94907 1x8bA 289 5.71e-24 1j1bA 420 1.26e-23 d.144.1.7 90758 1r3cA 366 1.52e-23 d.144.1.7 96906 1zzlA 351 1.85e-23 1wbsA 360 2.78e-23 1ywrA 360 5.50e-23 2b9hA 353 7.95e-23 2gfsA 372 9.20e-23 1zz2A 360 3.42e-22 1ckiA 317 1.67e-21 1csn d.144.1.7 41660 1ymiA 334 2.79e-21 1z57A 339 4.15e-21 2ac3A 316 8.08e-21 2ac5A 316 1.73e-20 1om1A 332 7.01e-20 d.144.1.7 93347 1m2rA 327 7.86e-20 d.144.1.7 84760 2eu9A 355 1.08e-19 1csn 298 4.80e-19 1csn d.144.1.7 41664 1wbpA 397 3.64e-17 1q8yA 373 3.67e-17 d.144.1.7 96234 1howA 373 4.76e-17 1hcl d.144.1.7 41679 1tqmA 282 2.11e-05 a.4.5.56,d.144.1.9 107236,107237 1zarA 282 4.86e-05 1e17A 150 3.51e-01 2hfh a.4.5.14 16143 1zthA 258 4.91e-01 2fnaA 357 9.08e-01 1fuiA 591 1.25e+00 1fuiA b.43.2.1,c.85.1.1 25674,35444 1ppjE 196 1.46e+00 b.33.1.1,f.23.12.1 104260,104261 1e4mM 501 1.91e+00 1e70M c.1.8.4 59226 2myr 501 2.68e+00 1tvxA 75 2.89e+00 1tvxA d.9.1.1 37441 1j7lA 264 2.91e+00 d.144.1.6 62697 1ylxA 103 3.30e+00 1wduA 245 3.36e+00 d.151.1.1 109286 2if1 126 3.63e+00 2if1 d.64.1.1 39547 1nw1A 429 3.72e+00 d.144.1.8 86286 1fadA 99 4.74e+00 1fadA a.77.1.2 18428 2booA 247 4.85e+00 1n40A 396 4.86e+00 a.104.1.1 79977 1qnrA 344 4.94e+00 1qnoA c.1.8.3 28834 1nxhA 126 5.42e+00 a.200.1.1 92300 1x42A 232 5.85e+00 1qw2A 102 6.05e+00 d.249.1.1 96456 1jk0B 345 6.56e+00 a.25.1.2 63143 2f46A 156 6.89e+00 1czj 111 7.21e+00 3cyr a.138.1.1 19663 1rie 129 7.54e+00 1rie b.33.1.1 24427 1s68A 249 7.84e+00 d.142.2.4 98591 1lldA 319 8.43e+00 3ldh c.2.1.5,d.162.1.1 30177,42144 1gz2A 142 8.60e+00 d.169.1.1 83392 1hbnA 549 9.55e+00 1mroA a.89.1.1,d.58.31.2 60898,60899 1mroA 548 1.01e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 2cx6A 90 1.06e+01 2bkkA 264 1.13e+01 1x92A 199 1.22e+01 1emvA 86 1.32e+01 1cei a.28.2.1 16944 1gvhA 396 1.43e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1g8iA 190 1.44e+01 1rec a.39.1.5 60363 1nd4A 264 1.45e+01 d.144.1.6 91815 1ji8A 111 1.47e+01 d.203.1.1 66733 2aq2B 237 1.52e+01 1bcpB 199 1.55e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 6paxA 133 1.56e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1t64A 377 1.61e+01 c.42.1.2 106543 1zzpA 130 1.76e+01 2comA 124 1.82e+01 2cruA 118 2.03e+01 1vajA 214 2.08e+01 1yovA 537 2.14e+01 1k3sA 113 2.21e+01 d.198.1.1 68120 1z00B 84 2.31e+01 2bykA 140 2.46e+01 1chd 203 2.60e+01 1chd c.40.1.1 32478 1y8xB 98 2.61e+01 1nowA 507 2.77e+01 c.1.8.6,d.92.2.1 85936,85937 2aaxA 275 2.77e+01 1bo1A 416 2.97e+01 1bo1A d.143.1.2 41591 1r77A 103 3.12e+01 1txqA 93 3.17e+01 2cwsA 237 3.35e+01 1y7pA 223 3.40e+01 1z9iA 53 3.41e+01 1twdA 256 3.42e+01 c.1.30.1 107397 1auiB 169 3.45e+01 1auiB a.39.1.5 17325 1wlgA 299 3.60e+01 1whzA 70 3.63e+01 1y6nL 145 3.82e+01 1fcdA 401 3.87e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1gp1A 198 3.87e+01 1gp1A c.47.1.10 33059 1nnvA 110 3.93e+01 d.17.7.1 92012 1qfoA 119 4.04e+01 1qfoA b.1.1.1 19708 1t3uA 104 4.07e+01 d.244.1.1 99120 2a5lA 200 4.10e+01 1hdmB 193 4.11e+01 1hdmB b.1.1.2,d.19.1.1 21584,38158 1a68 95 4.19e+01 1t1dA d.42.1.2 38639 1t1dA 100 4.23e+01 1t1dA d.42.1.2 38637 1ezfA 340 4.24e+01 1ezfA a.128.1.2 19440 1o51A 114 4.35e+01 d.58.5.4 92480 2ax6A 256 4.35e+01 1n8vA 112 4.38e+01 a.118.21.1 85457 1psrA 100 4.48e+01 1psrA a.39.1.2 17180 2etvA 346 4.57e+01 2g8oA 264 4.63e+01 2ezh 75 4.72e+01 2ezh a.4.1.2 16029 2g8mA 264 4.73e+01 1yixA 265 4.75e+01 1wmdA 434 4.89e+01 b.18.1.20,c.41.1.1 109408,109409 1wnfA 328 4.97e+01 2gk3A 256 5.19e+01 1d9cA 121 5.19e+01 1d9cA a.26.1.3 16901 1bm9A 122 5.25e+01 1bm9A a.4.5.7 16116 1fp1D 372 5.26e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2a1kA 233 5.30e+01 1fr2A 86 5.41e+01 a.28.2.1 83256 1nrlA 316 5.48e+01 a.123.1.1 92091 1qv1A 195 5.51e+01 a.39.1.5 96347 2cvxA 888 5.55e+01 1umqA 81 5.57e+01 a.4.1.12 99625 2f8lA 344 5.89e+01 1qqqA 264 5.93e+01 1bkpA d.117.1.1 40931 1sg7A 96 5.96e+01 1fu1A 203 5.98e+01 1fu1B b.59.1.1,h.1.11.1 27076,45630 1jhgA 101 6.04e+01 1jhgA a.4.12.1 19009 1or0A 160 6.07e+01 d.153.1.2 93445 1wlsA 328 6.08e+01 1oshA 232 6.10e+01 a.123.1.1 93496 2bgzA 299 6.19e+01 2ilk 160 6.50e+01 2ilk a.26.1.3 16885 1kveA 63 6.54e+01 1kveA d.70.1.2 39590 2b4yA 271 6.57e+01 1dsxA 87 6.59e+01 1t1dA d.42.1.2 38644 1sfnA 246 6.61e+01 b.82.1.11 105496 1ttwA 138 6.68e+01 d.198.1.1 107308 1nlqA 108 6.71e+01 b.121.3.1 85853 1fm2A 169 6.77e+01 1fm2A d.153.1.2 59877 2ez6A 221 6.84e+01 1s5dA 240 6.85e+01 d.166.1.1 98541 1k4mA 213 6.90e+01 c.26.1.3 77258 1mrp 309 6.91e+01 1mrp c.94.1.1 35796 1el4A 195 7.14e+01 1ej3A a.39.1.5 59453 1evfA 264 7.15e+01 1bkpA d.117.1.1 40932 1cpcA 162 7.29e+01 1cpcA a.1.1.3 15643 1orjA 130 7.41e+01 a.24.19.1 93456 1o6dA 163 7.46e+01 c.116.1.3 92567 1yvhA 329 7.66e+01 1jvr 137 7.68e+01 1jvr a.61.1.2 18132 1f5fA 205 7.71e+01 1d2sA b.29.1.4 24222 1jf2A 195 7.75e+01 1ej3A a.39.1.5 62930 2b81A 323 7.90e+01 1vheA 373 7.91e+01 b.49.3.1,c.56.5.4 100669,100670 2b8iA 77 7.96e+01 1or0B 528 7.98e+01 1oe8A 211 8.01e+01 a.45.1.1,c.47.1.5 86905,86906 1t7rA 269 8.04e+01 a.123.1.1 106635 1sazA 381 8.11e+01 1hg4A 279 8.18e+01 1lbd a.123.1.1 19333 1vhh 162 8.25e+01 1vhh d.65.1.2 39550 1sfp 114 8.25e+01 1sfp b.23.1.1 23895 1ktbA 405 8.32e+01 b.71.1.1,c.1.8.1 72960,72961 1i37A 260 8.33e+01 1a28A a.123.1.1 61583 1ni9A 338 8.35e+01 e.7.1.2 85739 1gq8A 319 8.40e+01 b.80.1.5 70350 1hbkA 94 8.51e+01 1aca a.11.1.1 60887 1npk 154 8.69e+01 1npk d.58.6.1 39099 2c6yA 111 8.73e+01 1j3aA 142 8.79e+01 c.21.1.1 77070