PFRMAT RR TARGET T0291 AUTHOR 5370-1100-4902 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.3xnearNS_str2.miRvp_pplR.n28.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 TYVDPHTYEDPTQAVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPS KKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKP VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH RDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPE AIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLP PPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSA AARPSNLLLD 27 41 0 8 0.530914330263 33 104 0 8 0.434660911936 41 56 0 8 0.454479970672 41 58 0 8 0.461961933926 41 88 0 8 0.458989541154 41 89 0 8 0.44444949208 41 103 0 8 0.471555157512 41 104 0 8 0.470716579968 42 56 0 8 0.439298261008 42 73 0 8 0.470252206381 56 103 0 8 0.436569887533 56 104 0 8 0.441944511497 58 73 0 8 0.444764209504 58 88 0 8 0.454409423841 58 89 0 8 0.467522771283 58 103 0 8 0.470107934976 58 104 0 8 0.471014139742 73 83 0 8 0.448132536536 83 103 0 8 0.447498848748 83 104 0 8 0.450909215705 88 102 0 8 0.465503047014 88 103 0 8 0.644401105577 88 104 0 8 0.626159710291 88 113 0 8 0.469539866317 88 117 0 8 0.492038213645 88 136 0 8 0.44670354931 88 143 0 8 0.495204507361 88 153 0 8 0.451218536424 88 159 0 8 0.450361121097 88 168 0 8 0.473250346527 89 101 0 8 0.498263405388 89 102 0 8 0.544503666592 89 103 0 8 0.672136305577 89 104 0 8 0.665398591045 89 105 0 8 0.493735299102 89 107 0 8 0.435032962865 89 113 0 8 0.552758383661 89 116 0 8 0.464239620076 89 117 0 8 0.589017854674 89 130 0 8 0.446967231477 89 132 0 8 0.439001506101 89 133 0 8 0.458376326395 89 136 0 8 0.477930150242 89 143 0 8 0.509463365466 89 153 0 8 0.438270691777 89 158 0 8 0.470400986268 89 159 0 8 0.51464125692 89 168 0 8 0.497726455696 89 218 0 8 0.439878483289 89 220 0 8 0.470134985864 91 101 0 8 0.475716485864 91 102 0 8 0.476821063813 91 103 0 8 0.609247338727 91 104 0 8 0.587607128672 91 113 0 8 0.528037267589 91 117 0 8 0.513601484429 91 143 0 8 0.450605321665 92 102 0 8 0.446767343383 92 103 0 8 0.567911432836 92 104 0 8 0.570150075255 92 113 0 8 0.50307569036 92 117 0 8 0.460210543992 93 104 0 8 0.457328977294 94 103 0 8 0.550634849697 94 104 0 8 0.564403681697 94 113 0 8 0.462987918679 95 104 0 8 0.542096717142 95 113 0 8 0.490940805027 95 117 0 8 0.463084654384 101 117 0 8 0.448068742463 102 113 0 8 0.53136472523 102 116 0 8 0.463972864041 102 117 0 8 0.520736854383 103 113 0 8 0.678988403299 103 116 0 8 0.561794655617 103 117 0 8 0.664962845562 103 129 0 8 0.526293310554 103 130 0 8 0.587165936371 103 132 0 8 0.586441509505 103 133 0 8 0.578924899921 103 136 0 8 0.611426066143 103 140 0 8 0.504058409607 103 142 0 8 0.463928893266 103 143 0 8 0.566152110448 103 149 0 8 0.487804495153 103 153 0 8 0.500821514768 103 158 0 8 0.578647112176 103 159 0 8 0.540677730847 103 166 0 8 0.553493704163 103 168 0 8 0.590499389317 103 173 0 8 0.523812160323 103 218 0 8 0.566435345012 103 219 0 8 0.515934095732 103 220 0 8 0.568951775177 103 223 0 8 0.435923227586 103 239 0 8 0.480602376302 103 243 0 8 0.465462007624 103 259 0 8 0.478949067044 103 262 0 8 0.461274173132 103 263 0 8 0.466405913596 103 280 0 8 0.504585228173 103 284 0 8 0.50415972087 104 113 0 8 0.68700067337 104 116 0 8 0.591948243048 104 117 0 8 0.672577497879 104 124 0 8 0.469936612682 104 126 0 8 0.534657935745 104 129 0 8 0.547530514491 104 130 0 8 0.597514891595 104 132 0 8 0.594682545954 104 133 0 8 0.583712653417 104 136 0 8 0.618250929772 104 137 0 8 0.565574747683 104 139 0 8 0.453041900662 104 140 0 8 0.55503515381 104 142 0 8 0.508419859461 104 143 0 8 0.629509503692 104 149 0 8 0.538842250281 104 150 0 8 0.501885283025 104 152 0 8 0.474237703958 104 153 0 8 0.561767421524 104 158 0 8 0.612684281225 104 159 0 8 0.602830986489 104 160 0 8 0.478101472536 104 166 0 8 0.620113741712 104 168 0 8 0.641465270385 104 173 0 8 0.572459526316 104 194 0 8 0.444211327542 104 213 0 8 0.448783236076 104 218 0 8 0.634302704006 104 219 0 8 0.568962668814 104 220 0 8 0.607035930401 104 223 0 8 0.535951005167 104 239 0 8 0.528752455017 104 243 0 8 0.489621515978 104 259 0 8 0.521138459631 104 262 0 8 0.507736008439 104 263 0 8 0.483192980251 104 277 0 8 0.446040090956 104 280 0 8 0.543791751966 104 284 0 8 0.527668670992 105 117 0 8 0.523471070934 105 129 0 8 0.459635315989 105 132 0 8 0.455831213813 105 136 0 8 0.461695177891 106 117 0 8 0.436822350663 107 117 0 8 0.464462405337 108 117 0 8 0.442727052121 116 143 0 8 0.452846540208 117 129 0 8 0.518684816609 117 130 0 8 0.519686079008 117 132 0 8 0.511043821162 117 136 0 8 0.499504468354 117 137 0 8 0.440312542706 117 140 0 8 0.443135334185 117 142 0 8 0.437880924138 117 143 0 8 0.478633473344 117 153 0 8 0.449506235565 117 159 0 8 0.467361545108 129 143 0 8 0.464603111817 129 159 0 8 0.442765328564 130 140 0 8 0.474418043215 130 143 0 8 0.475220552908 130 153 0 8 0.451283656575 130 158 0 8 0.437880924138 130 159 0 8 0.456650642384 132 142 0 8 0.449544512008 132 143 0 8 0.473854483037 132 159 0 8 0.437548735809 133 150 0 8 0.443624422075 133 158 0 8 0.441092077984 136 150 0 8 0.450122347209 136 159 0 8 0.469702171648 139 150 0 8 0.449916133396 142 153 0 8 0.448026213081 142 158 0 8 0.434678628647 142 159 0 8 0.457464644276 143 153 0 8 0.508176712431 143 155 0 8 0.440839614854 143 158 0 8 0.493039673968 143 159 0 8 0.51394807526 143 160 0 8 0.459635315989 143 166 0 8 0.43983862069 143 168 0 8 0.444683403679 143 173 0 8 0.438912922546 143 239 0 8 0.44240382882 143 259 0 8 0.438775618037 143 262 0 8 0.442199687787 143 280 0 8 0.443458557486 149 158 0 8 0.482623287253 149 159 0 8 0.458908140965 150 159 0 8 0.446205955544 153 166 0 8 0.461976590851 153 168 0 8 0.462973261753 153 171 0 8 0.447167119571 153 173 0 8 0.46363868615 153 218 0 8 0.435790352255 153 280 0 8 0.433487179841 158 168 0 8 0.586686616339 158 171 0 8 0.471496547254 158 173 0 8 0.55928367227 158 218 0 8 0.506641846803 158 219 0 8 0.464570866582 158 220 0 8 0.486113406463 158 266 0 8 0.445117203373 159 168 0 8 0.633251468028 159 171 0 8 0.544624740508 159 172 0 8 0.486683099461 159 173 0 8 0.618648547526 159 175 0 8 0.480404482944 159 177 0 8 0.525908209631 159 184 0 8 0.475432451535 159 192 0 8 0.459298861873 159 194 0 8 0.458739913907 159 198 0 8 0.436242128382 159 202 0 8 0.462375259212 159 213 0 8 0.471622784733 159 214 0 8 0.458658513718 159 215 0 8 0.436135828117 159 216 0 8 0.463301576874 159 218 0 8 0.557017795758 159 219 0 8 0.525578123126 159 220 0 8 0.548160098854 159 221 0 8 0.463046546379 159 223 0 8 0.501363530023 159 224 0 8 0.472727362682 159 239 0 8 0.485801574506 159 243 0 8 0.46850291559 159 259 0 8 0.484800114183 159 262 0 8 0.466429364676 159 263 0 8 0.462562867853 159 266 0 8 0.449803941237 159 280 0 8 0.506165683869 159 284 0 8 0.491624436625 160 171 0 8 0.486916973429 160 173 0 8 0.56010614187 160 218 0 8 0.467393790343 160 220 0 8 0.467525702668 168 218 0 8 0.511813515859 168 219 0 8 0.442382564129 168 220 0 8 0.513843547866 168 223 0 8 0.455635853359 168 280 0 8 0.444198568728 173 218 0 8 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