/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0290.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0290.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0290/ -e s/START_COL/1/ \ -e s/REAL_PDB/2gw2A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175167122 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.82111 sec, elapsed time= 5.93328 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.8971 sec, elapsed time= 6.04119 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0290 numbered 1 through 173 Created new target T0290 from T0290.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2gw2A expands to /projects/compbio/data/pdb/2gw2.pdb.gz 2gw2A:Skipped atom 215, because occupancy 5.0000000e-01 <= existing 0.500 in 2gw2A Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 2gw2A Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 2gw2A Read 173 residues and 1339 atoms. # choosing archetypes in rotamer library # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 10.0215 sec, elapsed time= 10.2202 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -96.9653 # GDT_score(maxd=8,maxw=2.9)= -98.8072 # GDT_score(maxd=8,maxw=3.2)= -97.914 # GDT_score(maxd=8,maxw=3.5)= -96.6237 # GDT_score(maxd=10,maxw=3.8)= -97.0037 # GDT_score(maxd=10,maxw=4)= -96.0545 # GDT_score(maxd=10,maxw=4.2)= -94.9189 # GDT_score(maxd=12,maxw=4.3)= -96.1139 # GDT_score(maxd=12,maxw=4.5)= -94.9981 # GDT_score(maxd=12,maxw=4.7)= -93.6954 # GDT_score(maxd=14,maxw=5.2)= -91.9546 # GDT_score(maxd=14,maxw=5.5)= -89.3502 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2030.000 rmsd (weighted)= 1.538 (unweighted)= 6.295 superimposing iter= 1 total_weight= 8160.685 rmsd (weighted)= 0.537 (unweighted)= 6.294 superimposing iter= 2 total_weight= 2738.487 rmsd (weighted)= 0.371 (unweighted)= 6.293 superimposing iter= 3 total_weight= 1527.771 rmsd (weighted)= 0.346 (unweighted)= 6.293 superimposing iter= 4 total_weight= 1368.654 rmsd (weighted)= 0.341 (unweighted)= 6.293 superimposing iter= 5 total_weight= 1341.159 rmsd (weighted)= 0.339 (unweighted)= 6.293 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1218642554.pdb -s /var/tmp/to_scwrl_1218642554.seq -o /var/tmp/from_scwrl_1218642554.pdb > /var/tmp/scwrl_1218642554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218642554.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -96.9653 # GDT_score(maxd=8,maxw=2.9)= -98.7933 # GDT_score(maxd=8,maxw=3.2)= -97.8857 # GDT_score(maxd=8,maxw=3.5)= -96.5814 # GDT_score(maxd=10,maxw=3.8)= -96.967 # GDT_score(maxd=10,maxw=4)= -96.0086 # GDT_score(maxd=10,maxw=4.2)= -94.8757 # GDT_score(maxd=12,maxw=4.3)= -96.0712 # GDT_score(maxd=12,maxw=4.5)= -94.9559 # GDT_score(maxd=12,maxw=4.7)= -93.6538 # GDT_score(maxd=14,maxw=5.2)= -91.8835 # GDT_score(maxd=14,maxw=5.5)= -89.287 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1420685151.pdb -s /var/tmp/to_scwrl_1420685151.seq -o /var/tmp/from_scwrl_1420685151.pdb > /var/tmp/scwrl_1420685151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420685151.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.919075 # GDT_score = -87.8613 # GDT_score(maxd=8,maxw=2.9)= -88.3569 # GDT_score(maxd=8,maxw=3.2)= -87.826 # GDT_score(maxd=8,maxw=3.5)= -87.0855 # GDT_score(maxd=10,maxw=3.8)= -87.5607 # GDT_score(maxd=10,maxw=4)= -86.8482 # GDT_score(maxd=10,maxw=4.2)= -85.9761 # GDT_score(maxd=12,maxw=4.3)= -87.0203 # GDT_score(maxd=12,maxw=4.5)= -86.1401 # GDT_score(maxd=12,maxw=4.7)= -84.9277 # GDT_score(maxd=14,maxw=5.2)= -83.2546 # GDT_score(maxd=14,maxw=5.5)= -80.7749 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_126350711.pdb -s /var/tmp/to_scwrl_126350711.seq -o /var/tmp/from_scwrl_126350711.pdb > /var/tmp/scwrl_126350711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126350711.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.919075 # GDT_score = -91.0405 # GDT_score(maxd=8,maxw=2.9)= -91.5124 # GDT_score(maxd=8,maxw=3.2)= -91.2616 # GDT_score(maxd=8,maxw=3.5)= -90.8947 # GDT_score(maxd=10,maxw=3.8)= -91.0147 # GDT_score(maxd=10,maxw=4)= -90.6642 # GDT_score(maxd=10,maxw=4.2)= -90.1779 # GDT_score(maxd=12,maxw=4.3)= -90.6672 # GDT_score(maxd=12,maxw=4.5)= -90.1736 # GDT_score(maxd=12,maxw=4.7)= -89.4784 # GDT_score(maxd=14,maxw=5.2)= -88.3598 # GDT_score(maxd=14,maxw=5.5)= -86.5841 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_114096448.pdb -s /var/tmp/to_scwrl_114096448.seq -o /var/tmp/from_scwrl_114096448.pdb > /var/tmp/scwrl_114096448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_114096448.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.936416 # GDT_score = -89.3064 # GDT_score(maxd=8,maxw=2.9)= -89.991 # GDT_score(maxd=8,maxw=3.2)= -89.3064 # GDT_score(maxd=8,maxw=3.5)= -88.3903 # GDT_score(maxd=10,maxw=3.8)= -88.9076 # GDT_score(maxd=10,maxw=4)= -88.1371 # GDT_score(maxd=10,maxw=4.2)= -87.2005 # GDT_score(maxd=12,maxw=4.3)= -88.3242 # GDT_score(maxd=12,maxw=4.5)= -87.3884 # GDT_score(maxd=12,maxw=4.7)= -86.1933 # GDT_score(maxd=14,maxw=5.2)= -84.6328 # GDT_score(maxd=14,maxw=5.5)= -82.0708 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1203805725.pdb -s /var/tmp/to_scwrl_1203805725.seq -o /var/tmp/from_scwrl_1203805725.pdb > /var/tmp/scwrl_1203805725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203805725.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0290.try1-opt2.pdb looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -97.5434 # GDT_score(maxd=8,maxw=2.9)= -98.9523 # GDT_score(maxd=8,maxw=3.2)= -98.0367 # GDT_score(maxd=8,maxw=3.5)= -96.8371 # GDT_score(maxd=10,maxw=3.8)= -97.1973 # GDT_score(maxd=10,maxw=4)= -96.2739 # GDT_score(maxd=10,maxw=4.2)= -95.122 # GDT_score(maxd=12,maxw=4.3)= -96.3202 # GDT_score(maxd=12,maxw=4.5)= -95.1825 # GDT_score(maxd=12,maxw=4.7)= -93.7966 # GDT_score(maxd=14,maxw=5.2)= -91.8759 # GDT_score(maxd=14,maxw=5.5)= -89.2032 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2030.000 rmsd (weighted)= 1.396 (unweighted)= 6.305 superimposing iter= 1 total_weight= 7626.692 rmsd (weighted)= 0.519 (unweighted)= 6.302 superimposing iter= 2 total_weight= 2658.080 rmsd (weighted)= 0.362 (unweighted)= 6.300 superimposing iter= 3 total_weight= 1606.235 rmsd (weighted)= 0.328 (unweighted)= 6.300 superimposing iter= 4 total_weight= 1392.794 rmsd (weighted)= 0.319 (unweighted)= 6.300 superimposing iter= 5 total_weight= 1342.719 rmsd (weighted)= 0.317 (unweighted)= 6.300 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0290)E41.C and (T0290)K42.C only 0.000 apart, marking (T0290)K42.C as missing WARNING: atoms too close: (T0290)K42.N and (T0290)G43.N only 0.000 apart, marking (T0290)K42.N as missing WARNING: atoms too close: (T0290)K42.CA and (T0290)G43.CA only 0.000 apart, marking (T0290)K42.CA as missing WARNING: atoms too close: (T0290)Q151.C and (T0290)K152.C only 0.000 apart, marking (T0290)K152.C as missing WARNING: atoms too close: (T0290)K152.N and (T0290)T153.N only 0.000 apart, marking (T0290)K152.N as missing WARNING: atoms too close: (T0290)K152.CA and (T0290)T153.CA only 0.000 apart, marking (T0290)K152.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.947977 # GDT_score = -90.6069 # GDT_score(maxd=8,maxw=2.9)= -91.1076 # GDT_score(maxd=8,maxw=3.2)= -90.5337 # GDT_score(maxd=8,maxw=3.5)= -89.7814 # GDT_score(maxd=10,maxw=3.8)= -90.2758 # GDT_score(maxd=10,maxw=4)= -89.5612 # GDT_score(maxd=10,maxw=4.2)= -88.6633 # GDT_score(maxd=12,maxw=4.3)= -89.7406 # GDT_score(maxd=12,maxw=4.5)= -88.8325 # GDT_score(maxd=12,maxw=4.7)= -87.5776 # GDT_score(maxd=14,maxw=5.2)= -85.8656 # GDT_score(maxd=14,maxw=5.5)= -83.322 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0290)A156.C and (T0290)S157.C only 0.000 apart, marking (T0290)S157.C as missing WARNING: atoms too close: (T0290)S157.N and (T0290)K158.N only 0.000 apart, marking (T0290)S157.N as missing WARNING: atoms too close: (T0290)S157.CA and (T0290)K158.CA only 0.000 apart, marking (T0290)S157.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.953757 # GDT_score = -94.3642 # GDT_score(maxd=8,maxw=2.9)= -94.9702 # GDT_score(maxd=8,maxw=3.2)= -94.6718 # GDT_score(maxd=8,maxw=3.5)= -94.2667 # GDT_score(maxd=10,maxw=3.8)= -94.3943 # GDT_score(maxd=10,maxw=4)= -94.0174 # GDT_score(maxd=10,maxw=4.2)= -93.4823 # GDT_score(maxd=12,maxw=4.3)= -94.0194 # GDT_score(maxd=12,maxw=4.5)= -93.4803 # GDT_score(maxd=12,maxw=4.7)= -92.7205 # GDT_score(maxd=14,maxw=5.2)= -91.5098 # GDT_score(maxd=14,maxw=5.5)= -89.6156 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0290)G45.C and (T0290)H53.C only 0.000 apart, marking (T0290)H53.C as missing WARNING: atoms too close: (T0290)K46.N and (T0290)Y54.N only 0.000 apart, marking (T0290)K46.N as missing WARNING: atoms too close: (T0290)K46.CA and (T0290)Y54.CA only 0.000 apart, marking (T0290)K46.CA as missing WARNING: atoms too close: (T0290)K152.C and (T0290)T153.C only 0.000 apart, marking (T0290)T153.C as missing WARNING: atoms too close: (T0290)T153.N and (T0290)D154.N only 0.000 apart, marking (T0290)T153.N as missing WARNING: atoms too close: (T0290)T153.CA and (T0290)D154.CA only 0.000 apart, marking (T0290)T153.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0290)E41.C and (T0290)Q49.C only 0.000 apart, marking (T0290)Q49.C as missing WARNING: atoms too close: (T0290)K42.N and (T0290)K50.N only 0.000 apart, marking (T0290)K42.N as missing WARNING: atoms too close: (T0290)K42.CA and (T0290)K50.CA only 0.000 apart, marking (T0290)K42.CA as missing WARNING: atoms too close: (T0290)Q151.C and (T0290)K152.C only 0.000 apart, marking (T0290)K152.C as missing WARNING: atoms too close: (T0290)K152.N and (T0290)T153.N only 0.000 apart, marking (T0290)K152.N as missing WARNING: atoms too close: (T0290)K152.CA and (T0290)T153.CA only 0.000 apart, marking (T0290)K152.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0290)G45.C and (T0290)H53.C only 0.000 apart, marking (T0290)H53.C as missing WARNING: atoms too close: (T0290)K46.N and (T0290)Y54.N only 0.000 apart, marking (T0290)K46.N as missing WARNING: atoms too close: (T0290)K46.CA and (T0290)Y54.CA only 0.000 apart, marking (T0290)K46.CA as missing WARNING: atoms too close: (T0290)H98.C and (T0290)N99.C only 0.000 apart, marking (T0290)N99.C as missing WARNING: atoms too close: (T0290)N99.N and (T0290)A100.N only 0.000 apart, marking (T0290)N99.N as missing WARNING: atoms too close: (T0290)N99.CA and (T0290)A100.CA only 0.000 apart, marking (T0290)N99.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0290.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1614729168.pdb -s /var/tmp/to_scwrl_1614729168.seq -o /var/tmp/from_scwrl_1614729168.pdb > /var/tmp/scwrl_1614729168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1614729168.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1000330653.pdb -s /var/tmp/to_scwrl_1000330653.seq -o /var/tmp/from_scwrl_1000330653.pdb > /var/tmp/scwrl_1000330653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000330653.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2079023007.pdb -s /var/tmp/to_scwrl_2079023007.seq -o /var/tmp/from_scwrl_2079023007.pdb > /var/tmp/scwrl_2079023007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079023007.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2087642273.pdb -s /var/tmp/to_scwrl_2087642273.seq -o /var/tmp/from_scwrl_2087642273.pdb > /var/tmp/scwrl_2087642273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087642273.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1566182645.pdb -s /var/tmp/to_scwrl_1566182645.seq -o /var/tmp/from_scwrl_1566182645.pdb > /var/tmp/scwrl_1566182645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566182645.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1500359874.pdb -s /var/tmp/to_scwrl_1500359874.seq -o /var/tmp/from_scwrl_1500359874.pdb > /var/tmp/scwrl_1500359874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500359874.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_939930012.pdb -s /var/tmp/to_scwrl_939930012.seq -o /var/tmp/from_scwrl_939930012.pdb > /var/tmp/scwrl_939930012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939930012.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_810596555.pdb -s /var/tmp/to_scwrl_810596555.seq -o /var/tmp/from_scwrl_810596555.pdb > /var/tmp/scwrl_810596555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_810596555.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_242071221.pdb -s /var/tmp/to_scwrl_242071221.seq -o /var/tmp/from_scwrl_242071221.pdb > /var/tmp/scwrl_242071221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_242071221.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_240095911.pdb -s /var/tmp/to_scwrl_240095911.seq -o /var/tmp/from_scwrl_240095911.pdb > /var/tmp/scwrl_240095911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_240095911.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1162920754.pdb -s /var/tmp/to_scwrl_1162920754.seq -o /var/tmp/from_scwrl_1162920754.pdb > /var/tmp/scwrl_1162920754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1162920754.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1455418692.pdb -s /var/tmp/to_scwrl_1455418692.seq -o /var/tmp/from_scwrl_1455418692.pdb > /var/tmp/scwrl_1455418692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455418692.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1229004610.pdb -s /var/tmp/to_scwrl_1229004610.seq -o /var/tmp/from_scwrl_1229004610.pdb > /var/tmp/scwrl_1229004610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229004610.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_916603379.pdb -s /var/tmp/to_scwrl_916603379.seq -o /var/tmp/from_scwrl_916603379.pdb > /var/tmp/scwrl_916603379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_916603379.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_755753627.pdb -s /var/tmp/to_scwrl_755753627.seq -o /var/tmp/from_scwrl_755753627.pdb > /var/tmp/scwrl_755753627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755753627.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_86411671.pdb -s /var/tmp/to_scwrl_86411671.seq -o /var/tmp/from_scwrl_86411671.pdb > /var/tmp/scwrl_86411671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86411671.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1133742939.pdb -s /var/tmp/to_scwrl_1133742939.seq -o /var/tmp/from_scwrl_1133742939.pdb > /var/tmp/scwrl_1133742939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133742939.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_776105852.pdb -s /var/tmp/to_scwrl_776105852.seq -o /var/tmp/from_scwrl_776105852.pdb > /var/tmp/scwrl_776105852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776105852.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_269012428.pdb -s /var/tmp/to_scwrl_269012428.seq -o /var/tmp/from_scwrl_269012428.pdb > /var/tmp/scwrl_269012428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_269012428.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1828767420.pdb -s /var/tmp/to_scwrl_1828767420.seq -o /var/tmp/from_scwrl_1828767420.pdb > /var/tmp/scwrl_1828767420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1828767420.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1304312042.pdb -s /var/tmp/to_scwrl_1304312042.seq -o /var/tmp/from_scwrl_1304312042.pdb > /var/tmp/scwrl_1304312042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1304312042.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1343914347.pdb -s /var/tmp/to_scwrl_1343914347.seq -o /var/tmp/from_scwrl_1343914347.pdb > /var/tmp/scwrl_1343914347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1343914347.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_615729222.pdb -s /var/tmp/to_scwrl_615729222.seq -o /var/tmp/from_scwrl_615729222.pdb > /var/tmp/scwrl_615729222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_615729222.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_720652998.pdb -s /var/tmp/to_scwrl_720652998.seq -o /var/tmp/from_scwrl_720652998.pdb > /var/tmp/scwrl_720652998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_720652998.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_121311757.pdb -s /var/tmp/to_scwrl_121311757.seq -o /var/tmp/from_scwrl_121311757.pdb > /var/tmp/scwrl_121311757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121311757.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1639805414.pdb -s /var/tmp/to_scwrl_1639805414.seq -o /var/tmp/from_scwrl_1639805414.pdb > /var/tmp/scwrl_1639805414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1639805414.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1939295553.pdb -s /var/tmp/to_scwrl_1939295553.seq -o /var/tmp/from_scwrl_1939295553.pdb > /var/tmp/scwrl_1939295553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1939295553.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1541996908.pdb -s /var/tmp/to_scwrl_1541996908.seq -o /var/tmp/from_scwrl_1541996908.pdb > /var/tmp/scwrl_1541996908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541996908.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1766156126.pdb -s /var/tmp/to_scwrl_1766156126.seq -o /var/tmp/from_scwrl_1766156126.pdb > /var/tmp/scwrl_1766156126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766156126.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2053392001.pdb -s /var/tmp/to_scwrl_2053392001.seq -o /var/tmp/from_scwrl_2053392001.pdb > /var/tmp/scwrl_2053392001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2053392001.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_598318987.pdb -s /var/tmp/to_scwrl_598318987.seq -o /var/tmp/from_scwrl_598318987.pdb > /var/tmp/scwrl_598318987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598318987.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1233401647.pdb -s /var/tmp/to_scwrl_1233401647.seq -o /var/tmp/from_scwrl_1233401647.pdb > /var/tmp/scwrl_1233401647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233401647.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_906239007.pdb -s /var/tmp/to_scwrl_906239007.seq -o /var/tmp/from_scwrl_906239007.pdb > /var/tmp/scwrl_906239007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906239007.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_529858348.pdb -s /var/tmp/to_scwrl_529858348.seq -o /var/tmp/from_scwrl_529858348.pdb > /var/tmp/scwrl_529858348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529858348.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1173560274.pdb -s /var/tmp/to_scwrl_1173560274.seq -o /var/tmp/from_scwrl_1173560274.pdb > /var/tmp/scwrl_1173560274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173560274.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_324938005.pdb -s /var/tmp/to_scwrl_324938005.seq -o /var/tmp/from_scwrl_324938005.pdb > /var/tmp/scwrl_324938005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_324938005.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2030218222.pdb -s /var/tmp/to_scwrl_2030218222.seq -o /var/tmp/from_scwrl_2030218222.pdb > /var/tmp/scwrl_2030218222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030218222.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2113490286.pdb -s /var/tmp/to_scwrl_2113490286.seq -o /var/tmp/from_scwrl_2113490286.pdb > /var/tmp/scwrl_2113490286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2113490286.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1135534559.pdb -s /var/tmp/to_scwrl_1135534559.seq -o /var/tmp/from_scwrl_1135534559.pdb > /var/tmp/scwrl_1135534559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135534559.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_124805796.pdb -s /var/tmp/to_scwrl_124805796.seq -o /var/tmp/from_scwrl_124805796.pdb > /var/tmp/scwrl_124805796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_124805796.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_206102551.pdb -s /var/tmp/to_scwrl_206102551.seq -o /var/tmp/from_scwrl_206102551.pdb > /var/tmp/scwrl_206102551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_206102551.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_150971668.pdb -s /var/tmp/to_scwrl_150971668.seq -o /var/tmp/from_scwrl_150971668.pdb > /var/tmp/scwrl_150971668.log Error: Couldn't open file /var/tmp/from_scwrl_150971668.pdb or /var/tmp/from_scwrl_150971668.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_150971668_b.pdb or decoys//var/tmp/from_scwrl_150971668_b.pdb.gz for input Trying /var/tmp/from_scwrl_150971668_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_150971668_b.pdb or /var/tmp/from_scwrl_150971668_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_150971668_a.pdb or decoys//var/tmp/from_scwrl_150971668_a.pdb.gz for input Trying /var/tmp/from_scwrl_150971668_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_150971668_a.pdb or /var/tmp/from_scwrl_150971668_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_150971668.pdb or /var/tmp/from_scwrl_150971668_b.pdb or /var/tmp/from_scwrl_150971668_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1580224488.pdb -s /var/tmp/to_scwrl_1580224488.seq -o /var/tmp/from_scwrl_1580224488.pdb > /var/tmp/scwrl_1580224488.log Error: Couldn't open file /var/tmp/from_scwrl_1580224488.pdb or /var/tmp/from_scwrl_1580224488.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1580224488_b.pdb or decoys//var/tmp/from_scwrl_1580224488_b.pdb.gz for input Trying /var/tmp/from_scwrl_1580224488_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1580224488_b.pdb or /var/tmp/from_scwrl_1580224488_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1580224488_a.pdb or decoys//var/tmp/from_scwrl_1580224488_a.pdb.gz for input Trying /var/tmp/from_scwrl_1580224488_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1580224488_a.pdb or /var/tmp/from_scwrl_1580224488_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1580224488.pdb or /var/tmp/from_scwrl_1580224488_b.pdb or /var/tmp/from_scwrl_1580224488_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1435107161.pdb -s /var/tmp/to_scwrl_1435107161.seq -o /var/tmp/from_scwrl_1435107161.pdb > /var/tmp/scwrl_1435107161.log Error: Couldn't open file /var/tmp/from_scwrl_1435107161.pdb or /var/tmp/from_scwrl_1435107161.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1435107161_b.pdb or decoys//var/tmp/from_scwrl_1435107161_b.pdb.gz for input Trying /var/tmp/from_scwrl_1435107161_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1435107161_b.pdb or /var/tmp/from_scwrl_1435107161_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1435107161_a.pdb or decoys//var/tmp/from_scwrl_1435107161_a.pdb.gz for input Trying /var/tmp/from_scwrl_1435107161_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1435107161_a.pdb or /var/tmp/from_scwrl_1435107161_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1435107161.pdb or /var/tmp/from_scwrl_1435107161_b.pdb or /var/tmp/from_scwrl_1435107161_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1067575047.pdb -s /var/tmp/to_scwrl_1067575047.seq -o /var/tmp/from_scwrl_1067575047.pdb > /var/tmp/scwrl_1067575047.log Error: Couldn't open file /var/tmp/from_scwrl_1067575047.pdb or /var/tmp/from_scwrl_1067575047.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1067575047_b.pdb or decoys//var/tmp/from_scwrl_1067575047_b.pdb.gz for input Trying /var/tmp/from_scwrl_1067575047_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1067575047_b.pdb or /var/tmp/from_scwrl_1067575047_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1067575047_a.pdb or decoys//var/tmp/from_scwrl_1067575047_a.pdb.gz for input Trying /var/tmp/from_scwrl_1067575047_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1067575047_a.pdb or /var/tmp/from_scwrl_1067575047_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1067575047.pdb or /var/tmp/from_scwrl_1067575047_b.pdb or /var/tmp/from_scwrl_1067575047_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_188494468.pdb -s /var/tmp/to_scwrl_188494468.seq -o /var/tmp/from_scwrl_188494468.pdb > /var/tmp/scwrl_188494468.log Error: Couldn't open file /var/tmp/from_scwrl_188494468.pdb or /var/tmp/from_scwrl_188494468.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_188494468_b.pdb or decoys//var/tmp/from_scwrl_188494468_b.pdb.gz for input Trying /var/tmp/from_scwrl_188494468_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_188494468_b.pdb or /var/tmp/from_scwrl_188494468_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_188494468_a.pdb or decoys//var/tmp/from_scwrl_188494468_a.pdb.gz for input Trying /var/tmp/from_scwrl_188494468_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_188494468_a.pdb or /var/tmp/from_scwrl_188494468_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_188494468.pdb or /var/tmp/from_scwrl_188494468_b.pdb or /var/tmp/from_scwrl_188494468_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1521518833.pdb -s /var/tmp/to_scwrl_1521518833.seq -o /var/tmp/from_scwrl_1521518833.pdb > /var/tmp/scwrl_1521518833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1521518833.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_53834339.pdb -s /var/tmp/to_scwrl_53834339.seq -o /var/tmp/from_scwrl_53834339.pdb > /var/tmp/scwrl_53834339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53834339.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_964600321.pdb -s /var/tmp/to_scwrl_964600321.seq -o /var/tmp/from_scwrl_964600321.pdb > /var/tmp/scwrl_964600321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_964600321.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1790531261.pdb -s /var/tmp/to_scwrl_1790531261.seq -o /var/tmp/from_scwrl_1790531261.pdb > /var/tmp/scwrl_1790531261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790531261.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1882601759.pdb -s /var/tmp/to_scwrl_1882601759.seq -o /var/tmp/from_scwrl_1882601759.pdb > /var/tmp/scwrl_1882601759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882601759.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_121428716.pdb -s /var/tmp/to_scwrl_121428716.seq -o /var/tmp/from_scwrl_121428716.pdb > /var/tmp/scwrl_121428716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121428716.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_986961962.pdb -s /var/tmp/to_scwrl_986961962.seq -o /var/tmp/from_scwrl_986961962.pdb > /var/tmp/scwrl_986961962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986961962.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_350847334.pdb -s /var/tmp/to_scwrl_350847334.seq -o /var/tmp/from_scwrl_350847334.pdb > /var/tmp/scwrl_350847334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_350847334.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_842081715.pdb -s /var/tmp/to_scwrl_842081715.seq -o /var/tmp/from_scwrl_842081715.pdb > /var/tmp/scwrl_842081715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842081715.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1108273718.pdb -s /var/tmp/to_scwrl_1108273718.seq -o /var/tmp/from_scwrl_1108273718.pdb > /var/tmp/scwrl_1108273718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108273718.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1990652749.pdb -s /var/tmp/to_scwrl_1990652749.seq -o /var/tmp/from_scwrl_1990652749.pdb > /var/tmp/scwrl_1990652749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990652749.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_633893621.pdb -s /var/tmp/to_scwrl_633893621.seq -o /var/tmp/from_scwrl_633893621.pdb > /var/tmp/scwrl_633893621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_633893621.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_502786980.pdb -s /var/tmp/to_scwrl_502786980.seq -o /var/tmp/from_scwrl_502786980.pdb > /var/tmp/scwrl_502786980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_502786980.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1609325228.pdb -s /var/tmp/to_scwrl_1609325228.seq -o /var/tmp/from_scwrl_1609325228.pdb > /var/tmp/scwrl_1609325228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1609325228.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_539801975.pdb -s /var/tmp/to_scwrl_539801975.seq -o /var/tmp/from_scwrl_539801975.pdb > /var/tmp/scwrl_539801975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_539801975.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1101105967.pdb -s /var/tmp/to_scwrl_1101105967.seq -o /var/tmp/from_scwrl_1101105967.pdb > /var/tmp/scwrl_1101105967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101105967.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_695243229.pdb -s /var/tmp/to_scwrl_695243229.seq -o /var/tmp/from_scwrl_695243229.pdb > /var/tmp/scwrl_695243229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_695243229.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1446040982.pdb -s /var/tmp/to_scwrl_1446040982.seq -o /var/tmp/from_scwrl_1446040982.pdb > /var/tmp/scwrl_1446040982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446040982.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1630964315.pdb -s /var/tmp/to_scwrl_1630964315.seq -o /var/tmp/from_scwrl_1630964315.pdb > /var/tmp/scwrl_1630964315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630964315.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1868803503.pdb -s /var/tmp/to_scwrl_1868803503.seq -o /var/tmp/from_scwrl_1868803503.pdb > /var/tmp/scwrl_1868803503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1868803503.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1770978987.pdb -s /var/tmp/to_scwrl_1770978987.seq -o /var/tmp/from_scwrl_1770978987.pdb > /var/tmp/scwrl_1770978987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770978987.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1513698890.pdb -s /var/tmp/to_scwrl_1513698890.seq -o /var/tmp/from_scwrl_1513698890.pdb > /var/tmp/scwrl_1513698890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513698890.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1834810143.pdb -s /var/tmp/to_scwrl_1834810143.seq -o /var/tmp/from_scwrl_1834810143.pdb > /var/tmp/scwrl_1834810143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1834810143.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_759029901.pdb -s /var/tmp/to_scwrl_759029901.seq -o /var/tmp/from_scwrl_759029901.pdb > /var/tmp/scwrl_759029901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759029901.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1638504686.pdb -s /var/tmp/to_scwrl_1638504686.seq -o /var/tmp/from_scwrl_1638504686.pdb > /var/tmp/scwrl_1638504686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638504686.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2040912694.pdb -s /var/tmp/to_scwrl_2040912694.seq -o /var/tmp/from_scwrl_2040912694.pdb > /var/tmp/scwrl_2040912694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2040912694.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_910001569.pdb -s /var/tmp/to_scwrl_910001569.seq -o /var/tmp/from_scwrl_910001569.pdb > /var/tmp/scwrl_910001569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_910001569.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1071245528.pdb -s /var/tmp/to_scwrl_1071245528.seq -o /var/tmp/from_scwrl_1071245528.pdb > /var/tmp/scwrl_1071245528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1071245528.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1328536208.pdb -s /var/tmp/to_scwrl_1328536208.seq -o /var/tmp/from_scwrl_1328536208.pdb > /var/tmp/scwrl_1328536208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328536208.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1977576615.pdb -s /var/tmp/to_scwrl_1977576615.seq -o /var/tmp/from_scwrl_1977576615.pdb > /var/tmp/scwrl_1977576615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977576615.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1259739995.pdb -s /var/tmp/to_scwrl_1259739995.seq -o /var/tmp/from_scwrl_1259739995.pdb > /var/tmp/scwrl_1259739995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259739995.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_702571395.pdb -s /var/tmp/to_scwrl_702571395.seq -o /var/tmp/from_scwrl_702571395.pdb > /var/tmp/scwrl_702571395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_702571395.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2031410954.pdb -s /var/tmp/to_scwrl_2031410954.seq -o /var/tmp/from_scwrl_2031410954.pdb > /var/tmp/scwrl_2031410954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2031410954.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_76856669.pdb -s /var/tmp/to_scwrl_76856669.seq -o /var/tmp/from_scwrl_76856669.pdb > /var/tmp/scwrl_76856669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_76856669.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_345619009.pdb -s /var/tmp/to_scwrl_345619009.seq -o /var/tmp/from_scwrl_345619009.pdb > /var/tmp/scwrl_345619009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345619009.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1766529067.pdb -s /var/tmp/to_scwrl_1766529067.seq -o /var/tmp/from_scwrl_1766529067.pdb > /var/tmp/scwrl_1766529067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766529067.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_198285386.pdb -s /var/tmp/to_scwrl_198285386.seq -o /var/tmp/from_scwrl_198285386.pdb > /var/tmp/scwrl_198285386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198285386.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1332580970.pdb -s /var/tmp/to_scwrl_1332580970.seq -o /var/tmp/from_scwrl_1332580970.pdb > /var/tmp/scwrl_1332580970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332580970.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2117376401.pdb -s /var/tmp/to_scwrl_2117376401.seq -o /var/tmp/from_scwrl_2117376401.pdb > /var/tmp/scwrl_2117376401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117376401.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1040367101.pdb -s /var/tmp/to_scwrl_1040367101.seq -o /var/tmp/from_scwrl_1040367101.pdb > /var/tmp/scwrl_1040367101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1040367101.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_293371042.pdb -s /var/tmp/to_scwrl_293371042.seq -o /var/tmp/from_scwrl_293371042.pdb > /var/tmp/scwrl_293371042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_293371042.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1960545503.pdb -s /var/tmp/to_scwrl_1960545503.seq -o /var/tmp/from_scwrl_1960545503.pdb > /var/tmp/scwrl_1960545503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960545503.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1674260721.pdb -s /var/tmp/to_scwrl_1674260721.seq -o /var/tmp/from_scwrl_1674260721.pdb > /var/tmp/scwrl_1674260721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674260721.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_796158023.pdb -s /var/tmp/to_scwrl_796158023.seq -o /var/tmp/from_scwrl_796158023.pdb > /var/tmp/scwrl_796158023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796158023.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1422387084.pdb -s /var/tmp/to_scwrl_1422387084.seq -o /var/tmp/from_scwrl_1422387084.pdb > /var/tmp/scwrl_1422387084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1422387084.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_66579049.pdb -s /var/tmp/to_scwrl_66579049.seq -o /var/tmp/from_scwrl_66579049.pdb > /var/tmp/scwrl_66579049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66579049.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1897263990.pdb -s /var/tmp/to_scwrl_1897263990.seq -o /var/tmp/from_scwrl_1897263990.pdb > /var/tmp/scwrl_1897263990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1897263990.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2117630314.pdb -s /var/tmp/to_scwrl_2117630314.seq -o /var/tmp/from_scwrl_2117630314.pdb > /var/tmp/scwrl_2117630314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117630314.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1512620031.pdb -s /var/tmp/to_scwrl_1512620031.seq -o /var/tmp/from_scwrl_1512620031.pdb > /var/tmp/scwrl_1512620031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1512620031.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1380744658.pdb -s /var/tmp/to_scwrl_1380744658.seq -o /var/tmp/from_scwrl_1380744658.pdb > /var/tmp/scwrl_1380744658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380744658.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1838950170.pdb -s /var/tmp/to_scwrl_1838950170.seq -o /var/tmp/from_scwrl_1838950170.pdb > /var/tmp/scwrl_1838950170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838950170.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1136115372.pdb -s /var/tmp/to_scwrl_1136115372.seq -o /var/tmp/from_scwrl_1136115372.pdb > /var/tmp/scwrl_1136115372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1136115372.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_746959902.pdb -s /var/tmp/to_scwrl_746959902.seq -o /var/tmp/from_scwrl_746959902.pdb > /var/tmp/scwrl_746959902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_746959902.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1526276666.pdb -s /var/tmp/to_scwrl_1526276666.seq -o /var/tmp/from_scwrl_1526276666.pdb > /var/tmp/scwrl_1526276666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526276666.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1895145273.pdb -s /var/tmp/to_scwrl_1895145273.seq -o /var/tmp/from_scwrl_1895145273.pdb > /var/tmp/scwrl_1895145273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895145273.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_237980941.pdb -s /var/tmp/to_scwrl_237980941.seq -o /var/tmp/from_scwrl_237980941.pdb > /var/tmp/scwrl_237980941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237980941.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1419705713.pdb -s /var/tmp/to_scwrl_1419705713.seq -o /var/tmp/from_scwrl_1419705713.pdb > /var/tmp/scwrl_1419705713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419705713.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_657663195.pdb -s /var/tmp/to_scwrl_657663195.seq -o /var/tmp/from_scwrl_657663195.pdb > /var/tmp/scwrl_657663195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_657663195.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1309226468.pdb -s /var/tmp/to_scwrl_1309226468.seq -o /var/tmp/from_scwrl_1309226468.pdb > /var/tmp/scwrl_1309226468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1309226468.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_600758276.pdb -s /var/tmp/to_scwrl_600758276.seq -o /var/tmp/from_scwrl_600758276.pdb > /var/tmp/scwrl_600758276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600758276.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_487756163.pdb -s /var/tmp/to_scwrl_487756163.seq -o /var/tmp/from_scwrl_487756163.pdb > /var/tmp/scwrl_487756163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487756163.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_421482817.pdb -s /var/tmp/to_scwrl_421482817.seq -o /var/tmp/from_scwrl_421482817.pdb > /var/tmp/scwrl_421482817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421482817.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1303329670.pdb -s /var/tmp/to_scwrl_1303329670.seq -o /var/tmp/from_scwrl_1303329670.pdb > /var/tmp/scwrl_1303329670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1303329670.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_371683470.pdb -s /var/tmp/to_scwrl_371683470.seq -o /var/tmp/from_scwrl_371683470.pdb > /var/tmp/scwrl_371683470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371683470.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_498339487.pdb -s /var/tmp/to_scwrl_498339487.seq -o /var/tmp/from_scwrl_498339487.pdb > /var/tmp/scwrl_498339487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498339487.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1648948680.pdb -s /var/tmp/to_scwrl_1648948680.seq -o /var/tmp/from_scwrl_1648948680.pdb > /var/tmp/scwrl_1648948680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1648948680.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2138212537.pdb -s /var/tmp/to_scwrl_2138212537.seq -o /var/tmp/from_scwrl_2138212537.pdb > /var/tmp/scwrl_2138212537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2138212537.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_696624873.pdb -s /var/tmp/to_scwrl_696624873.seq -o /var/tmp/from_scwrl_696624873.pdb > /var/tmp/scwrl_696624873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696624873.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_834046004.pdb -s /var/tmp/to_scwrl_834046004.seq -o /var/tmp/from_scwrl_834046004.pdb > /var/tmp/scwrl_834046004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834046004.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2108105292.pdb -s /var/tmp/to_scwrl_2108105292.seq -o /var/tmp/from_scwrl_2108105292.pdb > /var/tmp/scwrl_2108105292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108105292.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1736991973.pdb -s /var/tmp/to_scwrl_1736991973.seq -o /var/tmp/from_scwrl_1736991973.pdb > /var/tmp/scwrl_1736991973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1736991973.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1127417046.pdb -s /var/tmp/to_scwrl_1127417046.seq -o /var/tmp/from_scwrl_1127417046.pdb > /var/tmp/scwrl_1127417046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1127417046.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1921167148.pdb -s /var/tmp/to_scwrl_1921167148.seq -o /var/tmp/from_scwrl_1921167148.pdb > /var/tmp/scwrl_1921167148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1921167148.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1263769047.pdb -s /var/tmp/to_scwrl_1263769047.seq -o /var/tmp/from_scwrl_1263769047.pdb > /var/tmp/scwrl_1263769047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1263769047.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1923575069.pdb -s /var/tmp/to_scwrl_1923575069.seq -o /var/tmp/from_scwrl_1923575069.pdb > /var/tmp/scwrl_1923575069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923575069.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1196070586.pdb -s /var/tmp/to_scwrl_1196070586.seq -o /var/tmp/from_scwrl_1196070586.pdb > /var/tmp/scwrl_1196070586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196070586.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1330348096.pdb -s /var/tmp/to_scwrl_1330348096.seq -o /var/tmp/from_scwrl_1330348096.pdb > /var/tmp/scwrl_1330348096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330348096.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1673355412.pdb -s /var/tmp/to_scwrl_1673355412.seq -o /var/tmp/from_scwrl_1673355412.pdb > /var/tmp/scwrl_1673355412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673355412.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1166217253.pdb -s /var/tmp/to_scwrl_1166217253.seq -o /var/tmp/from_scwrl_1166217253.pdb > /var/tmp/scwrl_1166217253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166217253.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_695484482.pdb -s /var/tmp/to_scwrl_695484482.seq -o /var/tmp/from_scwrl_695484482.pdb > /var/tmp/scwrl_695484482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_695484482.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_906616424.pdb -s /var/tmp/to_scwrl_906616424.seq -o /var/tmp/from_scwrl_906616424.pdb > /var/tmp/scwrl_906616424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906616424.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_857683777.pdb -s /var/tmp/to_scwrl_857683777.seq -o /var/tmp/from_scwrl_857683777.pdb > /var/tmp/scwrl_857683777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857683777.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1831599854.pdb -s /var/tmp/to_scwrl_1831599854.seq -o /var/tmp/from_scwrl_1831599854.pdb > /var/tmp/scwrl_1831599854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831599854.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1653576325.pdb -s /var/tmp/to_scwrl_1653576325.seq -o /var/tmp/from_scwrl_1653576325.pdb > /var/tmp/scwrl_1653576325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653576325.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_236476797.pdb -s /var/tmp/to_scwrl_236476797.seq -o /var/tmp/from_scwrl_236476797.pdb > /var/tmp/scwrl_236476797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236476797.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1579261480.pdb -s /var/tmp/to_scwrl_1579261480.seq -o /var/tmp/from_scwrl_1579261480.pdb > /var/tmp/scwrl_1579261480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1579261480.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1891557266.pdb -s /var/tmp/to_scwrl_1891557266.seq -o /var/tmp/from_scwrl_1891557266.pdb > /var/tmp/scwrl_1891557266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891557266.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1656182510.pdb -s /var/tmp/to_scwrl_1656182510.seq -o /var/tmp/from_scwrl_1656182510.pdb > /var/tmp/scwrl_1656182510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1656182510.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_89441028.pdb -s /var/tmp/to_scwrl_89441028.seq -o /var/tmp/from_scwrl_89441028.pdb > /var/tmp/scwrl_89441028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_89441028.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1053300088.pdb -s /var/tmp/to_scwrl_1053300088.seq -o /var/tmp/from_scwrl_1053300088.pdb > /var/tmp/scwrl_1053300088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053300088.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_109457139.pdb -s /var/tmp/to_scwrl_109457139.seq -o /var/tmp/from_scwrl_109457139.pdb > /var/tmp/scwrl_109457139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_109457139.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_577197191.pdb -s /var/tmp/to_scwrl_577197191.seq -o /var/tmp/from_scwrl_577197191.pdb > /var/tmp/scwrl_577197191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577197191.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1474782904.pdb -s /var/tmp/to_scwrl_1474782904.seq -o /var/tmp/from_scwrl_1474782904.pdb > /var/tmp/scwrl_1474782904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474782904.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1412786810.pdb -s /var/tmp/to_scwrl_1412786810.seq -o /var/tmp/from_scwrl_1412786810.pdb > /var/tmp/scwrl_1412786810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412786810.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_948880661.pdb -s /var/tmp/to_scwrl_948880661.seq -o /var/tmp/from_scwrl_948880661.pdb > /var/tmp/scwrl_948880661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948880661.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1973122391.pdb -s /var/tmp/to_scwrl_1973122391.seq -o /var/tmp/from_scwrl_1973122391.pdb > /var/tmp/scwrl_1973122391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1973122391.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_914251844.pdb -s /var/tmp/to_scwrl_914251844.seq -o /var/tmp/from_scwrl_914251844.pdb > /var/tmp/scwrl_914251844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914251844.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_939609552.pdb -s /var/tmp/to_scwrl_939609552.seq -o /var/tmp/from_scwrl_939609552.pdb > /var/tmp/scwrl_939609552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939609552.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_522263617.pdb -s /var/tmp/to_scwrl_522263617.seq -o /var/tmp/from_scwrl_522263617.pdb > /var/tmp/scwrl_522263617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_522263617.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1748297847.pdb -s /var/tmp/to_scwrl_1748297847.seq -o /var/tmp/from_scwrl_1748297847.pdb > /var/tmp/scwrl_1748297847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748297847.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_900231197.pdb -s /var/tmp/to_scwrl_900231197.seq -o /var/tmp/from_scwrl_900231197.pdb > /var/tmp/scwrl_900231197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900231197.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_111771943.pdb -s /var/tmp/to_scwrl_111771943.seq -o /var/tmp/from_scwrl_111771943.pdb > /var/tmp/scwrl_111771943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111771943.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_728231247.pdb -s /var/tmp/to_scwrl_728231247.seq -o /var/tmp/from_scwrl_728231247.pdb > /var/tmp/scwrl_728231247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728231247.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_673914698.pdb -s /var/tmp/to_scwrl_673914698.seq -o /var/tmp/from_scwrl_673914698.pdb > /var/tmp/scwrl_673914698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673914698.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1375540990.pdb -s /var/tmp/to_scwrl_1375540990.seq -o /var/tmp/from_scwrl_1375540990.pdb > /var/tmp/scwrl_1375540990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375540990.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_504322669.pdb -s /var/tmp/to_scwrl_504322669.seq -o /var/tmp/from_scwrl_504322669.pdb > /var/tmp/scwrl_504322669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504322669.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1869985284.pdb -s /var/tmp/to_scwrl_1869985284.seq -o /var/tmp/from_scwrl_1869985284.pdb > /var/tmp/scwrl_1869985284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1869985284.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_558405441.pdb -s /var/tmp/to_scwrl_558405441.seq -o /var/tmp/from_scwrl_558405441.pdb > /var/tmp/scwrl_558405441.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_558405441.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_30194434.pdb -s /var/tmp/to_scwrl_30194434.seq -o /var/tmp/from_scwrl_30194434.pdb > /var/tmp/scwrl_30194434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30194434.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_888718891.pdb -s /var/tmp/to_scwrl_888718891.seq -o /var/tmp/from_scwrl_888718891.pdb > /var/tmp/scwrl_888718891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_888718891.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1253889922.pdb -s /var/tmp/to_scwrl_1253889922.seq -o /var/tmp/from_scwrl_1253889922.pdb > /var/tmp/scwrl_1253889922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1253889922.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_936810858.pdb -s /var/tmp/to_scwrl_936810858.seq -o /var/tmp/from_scwrl_936810858.pdb > /var/tmp/scwrl_936810858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_936810858.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1746402668.pdb -s /var/tmp/to_scwrl_1746402668.seq -o /var/tmp/from_scwrl_1746402668.pdb > /var/tmp/scwrl_1746402668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1746402668.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_938006130.pdb -s /var/tmp/to_scwrl_938006130.seq -o /var/tmp/from_scwrl_938006130.pdb > /var/tmp/scwrl_938006130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938006130.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_442903536.pdb -s /var/tmp/to_scwrl_442903536.seq -o /var/tmp/from_scwrl_442903536.pdb > /var/tmp/scwrl_442903536.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442903536.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1982879465.pdb -s /var/tmp/to_scwrl_1982879465.seq -o /var/tmp/from_scwrl_1982879465.pdb > /var/tmp/scwrl_1982879465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1982879465.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_369783963.pdb -s /var/tmp/to_scwrl_369783963.seq -o /var/tmp/from_scwrl_369783963.pdb > /var/tmp/scwrl_369783963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_369783963.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_186977155.pdb -s /var/tmp/to_scwrl_186977155.seq -o /var/tmp/from_scwrl_186977155.pdb > /var/tmp/scwrl_186977155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_186977155.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1491578328.pdb -s /var/tmp/to_scwrl_1491578328.seq -o /var/tmp/from_scwrl_1491578328.pdb > /var/tmp/scwrl_1491578328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1491578328.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_459224991.pdb -s /var/tmp/to_scwrl_459224991.seq -o /var/tmp/from_scwrl_459224991.pdb > /var/tmp/scwrl_459224991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_459224991.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1240277242.pdb -s /var/tmp/to_scwrl_1240277242.seq -o /var/tmp/from_scwrl_1240277242.pdb > /var/tmp/scwrl_1240277242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240277242.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1601035468.pdb -s /var/tmp/to_scwrl_1601035468.seq -o /var/tmp/from_scwrl_1601035468.pdb > /var/tmp/scwrl_1601035468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1601035468.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1036422182.pdb -s /var/tmp/to_scwrl_1036422182.seq -o /var/tmp/from_scwrl_1036422182.pdb > /var/tmp/scwrl_1036422182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1036422182.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_567576501.pdb -s /var/tmp/to_scwrl_567576501.seq -o /var/tmp/from_scwrl_567576501.pdb > /var/tmp/scwrl_567576501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_567576501.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_866338632.pdb -s /var/tmp/to_scwrl_866338632.seq -o /var/tmp/from_scwrl_866338632.pdb > /var/tmp/scwrl_866338632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_866338632.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1985302842.pdb -s /var/tmp/to_scwrl_1985302842.seq -o /var/tmp/from_scwrl_1985302842.pdb > /var/tmp/scwrl_1985302842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1985302842.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_393215245.pdb -s /var/tmp/to_scwrl_393215245.seq -o /var/tmp/from_scwrl_393215245.pdb > /var/tmp/scwrl_393215245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_393215245.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1780590475.pdb -s /var/tmp/to_scwrl_1780590475.seq -o /var/tmp/from_scwrl_1780590475.pdb > /var/tmp/scwrl_1780590475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780590475.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_777428747.pdb -s /var/tmp/to_scwrl_777428747.seq -o /var/tmp/from_scwrl_777428747.pdb > /var/tmp/scwrl_777428747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777428747.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_915478863.pdb -s /var/tmp/to_scwrl_915478863.seq -o /var/tmp/from_scwrl_915478863.pdb > /var/tmp/scwrl_915478863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_915478863.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1381404675.pdb -s /var/tmp/to_scwrl_1381404675.seq -o /var/tmp/from_scwrl_1381404675.pdb > /var/tmp/scwrl_1381404675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1381404675.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1677659943.pdb -s /var/tmp/to_scwrl_1677659943.seq -o /var/tmp/from_scwrl_1677659943.pdb > /var/tmp/scwrl_1677659943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1677659943.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1027250806.pdb -s /var/tmp/to_scwrl_1027250806.seq -o /var/tmp/from_scwrl_1027250806.pdb > /var/tmp/scwrl_1027250806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1027250806.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2109635923.pdb -s /var/tmp/to_scwrl_2109635923.seq -o /var/tmp/from_scwrl_2109635923.pdb > /var/tmp/scwrl_2109635923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2109635923.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_204090995.pdb -s /var/tmp/to_scwrl_204090995.seq -o /var/tmp/from_scwrl_204090995.pdb > /var/tmp/scwrl_204090995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204090995.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_255308150.pdb -s /var/tmp/to_scwrl_255308150.seq -o /var/tmp/from_scwrl_255308150.pdb > /var/tmp/scwrl_255308150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_255308150.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_466474945.pdb -s /var/tmp/to_scwrl_466474945.seq -o /var/tmp/from_scwrl_466474945.pdb > /var/tmp/scwrl_466474945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466474945.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2074076279.pdb -s /var/tmp/to_scwrl_2074076279.seq -o /var/tmp/from_scwrl_2074076279.pdb > /var/tmp/scwrl_2074076279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074076279.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_813713591.pdb -s /var/tmp/to_scwrl_813713591.seq -o /var/tmp/from_scwrl_813713591.pdb > /var/tmp/scwrl_813713591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_813713591.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_496669380.pdb -s /var/tmp/to_scwrl_496669380.seq -o /var/tmp/from_scwrl_496669380.pdb > /var/tmp/scwrl_496669380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_496669380.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_815311524.pdb -s /var/tmp/to_scwrl_815311524.seq -o /var/tmp/from_scwrl_815311524.pdb > /var/tmp/scwrl_815311524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_815311524.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2067603513.pdb -s /var/tmp/to_scwrl_2067603513.seq -o /var/tmp/from_scwrl_2067603513.pdb > /var/tmp/scwrl_2067603513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067603513.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1433480237.pdb -s /var/tmp/to_scwrl_1433480237.seq -o /var/tmp/from_scwrl_1433480237.pdb > /var/tmp/scwrl_1433480237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433480237.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_414230545.pdb -s /var/tmp/to_scwrl_414230545.seq -o /var/tmp/from_scwrl_414230545.pdb > /var/tmp/scwrl_414230545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414230545.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_858125996.pdb -s /var/tmp/to_scwrl_858125996.seq -o /var/tmp/from_scwrl_858125996.pdb > /var/tmp/scwrl_858125996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_858125996.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1876383774.pdb -s /var/tmp/to_scwrl_1876383774.seq -o /var/tmp/from_scwrl_1876383774.pdb > /var/tmp/scwrl_1876383774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1876383774.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_249626363.pdb -s /var/tmp/to_scwrl_249626363.seq -o /var/tmp/from_scwrl_249626363.pdb > /var/tmp/scwrl_249626363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_249626363.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1227909958.pdb -s /var/tmp/to_scwrl_1227909958.seq -o /var/tmp/from_scwrl_1227909958.pdb > /var/tmp/scwrl_1227909958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227909958.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2063360929.pdb -s /var/tmp/to_scwrl_2063360929.seq -o /var/tmp/from_scwrl_2063360929.pdb > /var/tmp/scwrl_2063360929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2063360929.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1741204691.pdb -s /var/tmp/to_scwrl_1741204691.seq -o /var/tmp/from_scwrl_1741204691.pdb > /var/tmp/scwrl_1741204691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1741204691.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1687134949.pdb -s /var/tmp/to_scwrl_1687134949.seq -o /var/tmp/from_scwrl_1687134949.pdb > /var/tmp/scwrl_1687134949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1687134949.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1156154525.pdb -s /var/tmp/to_scwrl_1156154525.seq -o /var/tmp/from_scwrl_1156154525.pdb > /var/tmp/scwrl_1156154525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156154525.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1194756512.pdb -s /var/tmp/to_scwrl_1194756512.seq -o /var/tmp/from_scwrl_1194756512.pdb > /var/tmp/scwrl_1194756512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1194756512.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_576073484.pdb -s /var/tmp/to_scwrl_576073484.seq -o /var/tmp/from_scwrl_576073484.pdb > /var/tmp/scwrl_576073484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576073484.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1723731026.pdb -s /var/tmp/to_scwrl_1723731026.seq -o /var/tmp/from_scwrl_1723731026.pdb > /var/tmp/scwrl_1723731026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1723731026.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2061095144.pdb -s /var/tmp/to_scwrl_2061095144.seq -o /var/tmp/from_scwrl_2061095144.pdb > /var/tmp/scwrl_2061095144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061095144.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_413892679.pdb -s /var/tmp/to_scwrl_413892679.seq -o /var/tmp/from_scwrl_413892679.pdb > /var/tmp/scwrl_413892679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413892679.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2116946271.pdb -s /var/tmp/to_scwrl_2116946271.seq -o /var/tmp/from_scwrl_2116946271.pdb > /var/tmp/scwrl_2116946271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116946271.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1694201972.pdb -s /var/tmp/to_scwrl_1694201972.seq -o /var/tmp/from_scwrl_1694201972.pdb > /var/tmp/scwrl_1694201972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1694201972.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1191321426.pdb -s /var/tmp/to_scwrl_1191321426.seq -o /var/tmp/from_scwrl_1191321426.pdb > /var/tmp/scwrl_1191321426.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1191321426.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_884941487.pdb -s /var/tmp/to_scwrl_884941487.seq -o /var/tmp/from_scwrl_884941487.pdb > /var/tmp/scwrl_884941487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_884941487.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_928123002.pdb -s /var/tmp/to_scwrl_928123002.seq -o /var/tmp/from_scwrl_928123002.pdb > /var/tmp/scwrl_928123002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928123002.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_721497723.pdb -s /var/tmp/to_scwrl_721497723.seq -o /var/tmp/from_scwrl_721497723.pdb > /var/tmp/scwrl_721497723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721497723.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1912192293.pdb -s /var/tmp/to_scwrl_1912192293.seq -o /var/tmp/from_scwrl_1912192293.pdb > /var/tmp/scwrl_1912192293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1912192293.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_890275278.pdb -s /var/tmp/to_scwrl_890275278.seq -o /var/tmp/from_scwrl_890275278.pdb > /var/tmp/scwrl_890275278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_890275278.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_925588718.pdb -s /var/tmp/to_scwrl_925588718.seq -o /var/tmp/from_scwrl_925588718.pdb > /var/tmp/scwrl_925588718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925588718.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_20016796.pdb -s /var/tmp/to_scwrl_20016796.seq -o /var/tmp/from_scwrl_20016796.pdb > /var/tmp/scwrl_20016796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_20016796.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1356750222.pdb -s /var/tmp/to_scwrl_1356750222.seq -o /var/tmp/from_scwrl_1356750222.pdb > /var/tmp/scwrl_1356750222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356750222.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_852181351.pdb -s /var/tmp/to_scwrl_852181351.seq -o /var/tmp/from_scwrl_852181351.pdb > /var/tmp/scwrl_852181351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852181351.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_833730387.pdb -s /var/tmp/to_scwrl_833730387.seq -o /var/tmp/from_scwrl_833730387.pdb > /var/tmp/scwrl_833730387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833730387.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1853419602.pdb -s /var/tmp/to_scwrl_1853419602.seq -o /var/tmp/from_scwrl_1853419602.pdb > /var/tmp/scwrl_1853419602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1853419602.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1667492874.pdb -s /var/tmp/to_scwrl_1667492874.seq -o /var/tmp/from_scwrl_1667492874.pdb > /var/tmp/scwrl_1667492874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667492874.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_753850253.pdb -s /var/tmp/to_scwrl_753850253.seq -o /var/tmp/from_scwrl_753850253.pdb > /var/tmp/scwrl_753850253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753850253.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1139416193.pdb -s /var/tmp/to_scwrl_1139416193.seq -o /var/tmp/from_scwrl_1139416193.pdb > /var/tmp/scwrl_1139416193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139416193.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2081723419.pdb -s /var/tmp/to_scwrl_2081723419.seq -o /var/tmp/from_scwrl_2081723419.pdb > /var/tmp/scwrl_2081723419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081723419.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1611976248.pdb -s /var/tmp/to_scwrl_1611976248.seq -o /var/tmp/from_scwrl_1611976248.pdb > /var/tmp/scwrl_1611976248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1611976248.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_868316321.pdb -s /var/tmp/to_scwrl_868316321.seq -o /var/tmp/from_scwrl_868316321.pdb > /var/tmp/scwrl_868316321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_868316321.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_183866135.pdb -s /var/tmp/to_scwrl_183866135.seq -o /var/tmp/from_scwrl_183866135.pdb > /var/tmp/scwrl_183866135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183866135.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_692402560.pdb -s /var/tmp/to_scwrl_692402560.seq -o /var/tmp/from_scwrl_692402560.pdb > /var/tmp/scwrl_692402560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692402560.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_784193603.pdb -s /var/tmp/to_scwrl_784193603.seq -o /var/tmp/from_scwrl_784193603.pdb > /var/tmp/scwrl_784193603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784193603.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1925070826.pdb -s /var/tmp/to_scwrl_1925070826.seq -o /var/tmp/from_scwrl_1925070826.pdb > /var/tmp/scwrl_1925070826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1925070826.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_232053862.pdb -s /var/tmp/to_scwrl_232053862.seq -o /var/tmp/from_scwrl_232053862.pdb > /var/tmp/scwrl_232053862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_232053862.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1940348128.pdb -s /var/tmp/to_scwrl_1940348128.seq -o /var/tmp/from_scwrl_1940348128.pdb > /var/tmp/scwrl_1940348128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940348128.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_972343693.pdb -s /var/tmp/to_scwrl_972343693.seq -o /var/tmp/from_scwrl_972343693.pdb > /var/tmp/scwrl_972343693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972343693.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_808127346.pdb -s /var/tmp/to_scwrl_808127346.seq -o /var/tmp/from_scwrl_808127346.pdb > /var/tmp/scwrl_808127346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808127346.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1516595507.pdb -s /var/tmp/to_scwrl_1516595507.seq -o /var/tmp/from_scwrl_1516595507.pdb > /var/tmp/scwrl_1516595507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516595507.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_885955190.pdb -s /var/tmp/to_scwrl_885955190.seq -o /var/tmp/from_scwrl_885955190.pdb > /var/tmp/scwrl_885955190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885955190.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1222020024.pdb -s /var/tmp/to_scwrl_1222020024.seq -o /var/tmp/from_scwrl_1222020024.pdb > /var/tmp/scwrl_1222020024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222020024.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1486058132.pdb -s /var/tmp/to_scwrl_1486058132.seq -o /var/tmp/from_scwrl_1486058132.pdb > /var/tmp/scwrl_1486058132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1486058132.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_432673516.pdb -s /var/tmp/to_scwrl_432673516.seq -o /var/tmp/from_scwrl_432673516.pdb > /var/tmp/scwrl_432673516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_432673516.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_265857804.pdb -s /var/tmp/to_scwrl_265857804.seq -o /var/tmp/from_scwrl_265857804.pdb > /var/tmp/scwrl_265857804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265857804.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_223515972.pdb -s /var/tmp/to_scwrl_223515972.seq -o /var/tmp/from_scwrl_223515972.pdb > /var/tmp/scwrl_223515972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223515972.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1360796517.pdb -s /var/tmp/to_scwrl_1360796517.seq -o /var/tmp/from_scwrl_1360796517.pdb > /var/tmp/scwrl_1360796517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360796517.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_987355528.pdb -s /var/tmp/to_scwrl_987355528.seq -o /var/tmp/from_scwrl_987355528.pdb > /var/tmp/scwrl_987355528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_987355528.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2135708265.pdb -s /var/tmp/to_scwrl_2135708265.seq -o /var/tmp/from_scwrl_2135708265.pdb > /var/tmp/scwrl_2135708265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2135708265.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_103588148.pdb -s /var/tmp/to_scwrl_103588148.seq -o /var/tmp/from_scwrl_103588148.pdb > /var/tmp/scwrl_103588148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103588148.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1912944245.pdb -s /var/tmp/to_scwrl_1912944245.seq -o /var/tmp/from_scwrl_1912944245.pdb > /var/tmp/scwrl_1912944245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1912944245.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_8241414.pdb -s /var/tmp/to_scwrl_8241414.seq -o /var/tmp/from_scwrl_8241414.pdb > /var/tmp/scwrl_8241414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_8241414.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1460338370.pdb -s /var/tmp/to_scwrl_1460338370.seq -o /var/tmp/from_scwrl_1460338370.pdb > /var/tmp/scwrl_1460338370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460338370.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_617641949.pdb -s /var/tmp/to_scwrl_617641949.seq -o /var/tmp/from_scwrl_617641949.pdb > /var/tmp/scwrl_617641949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_617641949.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_841971801.pdb -s /var/tmp/to_scwrl_841971801.seq -o /var/tmp/from_scwrl_841971801.pdb > /var/tmp/scwrl_841971801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_841971801.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1166274326.pdb -s /var/tmp/to_scwrl_1166274326.seq -o /var/tmp/from_scwrl_1166274326.pdb > /var/tmp/scwrl_1166274326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166274326.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_137651176.pdb -s /var/tmp/to_scwrl_137651176.seq -o /var/tmp/from_scwrl_137651176.pdb > /var/tmp/scwrl_137651176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137651176.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1595822053.pdb -s /var/tmp/to_scwrl_1595822053.seq -o /var/tmp/from_scwrl_1595822053.pdb > /var/tmp/scwrl_1595822053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595822053.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 35.5716 sec, elapsed time= 464.145 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -367.471 shub_TS1 costs 0 real_cost = -366.526 nFOLD_TS5-scwrl costs 0 real_cost = 394.43 nFOLD_TS5 costs 0 real_cost = 456.309 nFOLD_TS4-scwrl costs 0 real_cost = 420.678 nFOLD_TS4 costs 0 real_cost = 476.479 nFOLD_TS3-scwrl costs 0 real_cost = -109.453 nFOLD_TS3 costs 0 real_cost = -56.1975 nFOLD_TS2-scwrl costs 0 real_cost = -54.1382 nFOLD_TS2 costs 0 real_cost = 29.6655 nFOLD_TS1-scwrl costs 0 real_cost = -275.435 nFOLD_TS1 costs 0 real_cost = -175.076 mGen-3D_TS1-scwrl costs 0 real_cost = -275.082 mGen-3D_TS1 costs 0 real_cost = -175.669 keasar-server_TS5-scwrl costs 0 real_cost = -246.835 keasar-server_TS5 costs 0 real_cost = -242.387 keasar-server_TS4-scwrl costs 0 real_cost = -305.402 keasar-server_TS4 costs 0 real_cost = -297.754 keasar-server_TS3-scwrl costs 0 real_cost = -241.114 keasar-server_TS3 costs 0 real_cost = -233.784 keasar-server_TS2-scwrl costs 0 real_cost = -250.744 keasar-server_TS2 costs 0 real_cost = -244.655 keasar-server_TS1-scwrl costs 0 real_cost = -241.114 keasar-server_TS1 costs 0 real_cost = -233.784 karypis.srv_TS5-scwrl costs 0 real_cost = -208.829 karypis.srv_TS5 costs 0 real_cost = -208.365 karypis.srv_TS4-scwrl costs 0 real_cost = -283.072 karypis.srv_TS4 costs 0 real_cost = -289.734 karypis.srv_TS3-scwrl costs 0 real_cost = -281.618 karypis.srv_TS3 costs 0 real_cost = -286.35 karypis.srv_TS2-scwrl costs 0 real_cost = -310.24 karypis.srv_TS2 costs 0 real_cost = -309.781 karypis.srv_TS1-scwrl costs 0 real_cost = -358.977 karypis.srv_TS1 costs 0 real_cost = -360.127 karypis.srv.4_TS1-scwrl costs 0 real_cost = 323.142 karypis.srv.4_TS1 costs 0 real_cost = 323.142 karypis.srv.2_TS5-scwrl costs 0 real_cost = -370.303 karypis.srv.2_TS5 costs 0 real_cost = -370.303 karypis.srv.2_TS4-scwrl costs 0 real_cost = -352.036 karypis.srv.2_TS4 costs 0 real_cost = -352.136 karypis.srv.2_TS3-scwrl costs 0 real_cost = -261.21 karypis.srv.2_TS3 costs 0 real_cost = -261.218 karypis.srv.2_TS2-scwrl costs 0 real_cost = -369.3 karypis.srv.2_TS2 costs 0 real_cost = -369.341 karypis.srv.2_TS1-scwrl costs 0 real_cost = -370.303 karypis.srv.2_TS1 costs 0 real_cost = -371.457 gtg_AL5-scwrl costs 0 real_cost = -305.387 gtg_AL5 costs 0 real_cost = -156.257 gtg_AL4-scwrl costs 0 real_cost = -267.001 gtg_AL4 costs 0 real_cost = -130.307 gtg_AL3-scwrl costs 0 real_cost = -296.149 gtg_AL3 costs 0 real_cost = -153.856 gtg_AL2-scwrl costs 0 real_cost = -306.733 gtg_AL2 costs 0 real_cost = -155.899 gtg_AL1-scwrl costs 0 real_cost = -363.391 gtg_AL1 costs 0 real_cost = -247.572 forecast-s_AL5-scwrl costs 0 real_cost = 433.061 forecast-s_AL5 costs 0 real_cost = 515.987 forecast-s_AL4-scwrl costs 0 real_cost = 412.012 forecast-s_AL4 costs 0 real_cost = 502.565 forecast-s_AL3-scwrl costs 0 real_cost = 394.461 forecast-s_AL3 costs 0 real_cost = 497.211 forecast-s_AL2-scwrl costs 0 real_cost = -39.7292 forecast-s_AL2 costs 0 real_cost = 55.9754 forecast-s_AL1-scwrl costs 0 real_cost = -287.413 forecast-s_AL1 costs 0 real_cost = -163.57 beautshotbase_TS1-scwrl costs 0 real_cost = -327.989 beautshotbase_TS1 costs 0 real_cost = -324.52 beautshot_TS1-scwrl costs 0 real_cost = -323.539 beautshot_TS1 costs 0 real_cost = -322.032 Zhang-Server_TS5-scwrl costs 0 real_cost = -366.102 Zhang-Server_TS5 costs 0 real_cost = -380.252 Zhang-Server_TS4-scwrl costs 0 real_cost = -365.119 Zhang-Server_TS4 costs 0 real_cost = -376.414 Zhang-Server_TS3-scwrl costs 0 real_cost = -360.408 Zhang-Server_TS3 costs 0 real_cost = -367.358 Zhang-Server_TS2-scwrl costs 0 real_cost = -367.268 Zhang-Server_TS2 costs 0 real_cost = -369.309 Zhang-Server_TS1-scwrl costs 0 real_cost = -362.904 Zhang-Server_TS1 costs 0 real_cost = -360.662 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -264.306 UNI-EID_sfst_AL5 costs 0 real_cost = -147.697 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -363.954 UNI-EID_sfst_AL4 costs 0 real_cost = -257.558 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -292.51 UNI-EID_sfst_AL3 costs 0 real_cost = -167.326 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -287.369 UNI-EID_sfst_AL2 costs 0 real_cost = -173.225 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -362.355 UNI-EID_sfst_AL1 costs 0 real_cost = -244.83 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -224.461 UNI-EID_expm_TS1 costs 0 real_cost = -224.52 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -264.306 UNI-EID_bnmx_TS5 costs 0 real_cost = -147.697 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -374.291 UNI-EID_bnmx_TS4 costs 0 real_cost = -266.297 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -292.51 UNI-EID_bnmx_TS3 costs 0 real_cost = -167.326 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -287.369 UNI-EID_bnmx_TS2 costs 0 real_cost = -173.225 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -362.355 UNI-EID_bnmx_TS1 costs 0 real_cost = -244.83 SPARKS2_TS5-scwrl costs 0 real_cost = -367.853 SPARKS2_TS5 costs 0 real_cost = -382.202 SPARKS2_TS4-scwrl costs 0 real_cost = -141.239 SPARKS2_TS4 costs 0 real_cost = -144.206 SPARKS2_TS3-scwrl costs 0 real_cost = -90.6772 SPARKS2_TS3 costs 0 real_cost = -95.4153 SPARKS2_TS2-scwrl costs 0 real_cost = -120.081 SPARKS2_TS2 costs 0 real_cost = -128.829 SPARKS2_TS1-scwrl costs 0 real_cost = -256.108 SPARKS2_TS1 costs 0 real_cost = -256.621 SP4_TS5-scwrl costs 0 real_cost = -146.577 SP4_TS5 costs 0 real_cost = -144.14 SP4_TS4-scwrl costs 0 real_cost = -83.3915 SP4_TS4 costs 0 real_cost = -88.5334 SP4_TS3-scwrl costs 0 real_cost = -365.695 SP4_TS3 costs 0 real_cost = -374.587 SP4_TS2-scwrl costs 0 real_cost = -120.081 SP4_TS2 costs 0 real_cost = -128.829 SP4_TS1-scwrl costs 0 real_cost = -265.101 SP4_TS1 costs 0 real_cost = -261.133 SP3_TS5-scwrl costs 0 real_cost = -365.695 SP3_TS5 costs 0 real_cost = -374.587 SP3_TS4-scwrl costs 0 real_cost = -141.239 SP3_TS4 costs 0 real_cost = -144.206 SP3_TS3-scwrl costs 0 real_cost = -96.6288 SP3_TS3 costs 0 real_cost = -104.363 SP3_TS2-scwrl costs 0 real_cost = -120.081 SP3_TS2 costs 0 real_cost = -128.829 SP3_TS1-scwrl costs 0 real_cost = -265.101 SP3_TS1 costs 0 real_cost = -261.133 SAM_T06_server_TS5-scwrl costs 0 real_cost = -274.512 SAM_T06_server_TS5 costs 0 real_cost = -289.053 SAM_T06_server_TS4-scwrl costs 0 real_cost = -227.678 SAM_T06_server_TS4 costs 0 real_cost = -249.511 SAM_T06_server_TS3-scwrl costs 0 real_cost = -254.672 SAM_T06_server_TS3 costs 0 real_cost = -303.919 SAM_T06_server_TS2-scwrl costs 0 real_cost = -170.77 SAM_T06_server_TS2 costs 0 real_cost = -234.828 SAM_T06_server_TS1-scwrl costs 0 real_cost = -368.597 SAM_T06_server_TS1 costs 0 real_cost = -363.73 SAM-T99_AL5-scwrl costs 0 real_cost = -247.78 SAM-T99_AL5 costs 0 real_cost = -140.042 SAM-T99_AL4-scwrl costs 0 real_cost = -262.454 SAM-T99_AL4 costs 0 real_cost = -149.183 SAM-T99_AL3-scwrl costs 0 real_cost = -300.59 SAM-T99_AL3 costs 0 real_cost = -192.401 SAM-T99_AL2-scwrl costs 0 real_cost = -369.908 SAM-T99_AL2 costs 0 real_cost = -254.331 SAM-T99_AL1-scwrl costs 0 real_cost = -372.693 SAM-T99_AL1 costs 0 real_cost = -258.715 SAM-T02_AL5-scwrl costs 0 real_cost = -369.378 SAM-T02_AL5 costs 0 real_cost = -262.989 SAM-T02_AL4-scwrl costs 0 real_cost = -289.293 SAM-T02_AL4 costs 0 real_cost = -174.937 SAM-T02_AL3-scwrl costs 0 real_cost = -271.838 SAM-T02_AL3 costs 0 real_cost = -140.096 SAM-T02_AL2-scwrl costs 0 real_cost = -279.195 SAM-T02_AL2 costs 0 real_cost = -145.709 SAM-T02_AL1-scwrl costs 0 real_cost = -282.996 SAM-T02_AL1 costs 0 real_cost = -153.424 ROKKY_TS5-scwrl costs 0 real_cost = -188.584 ROKKY_TS5 costs 0 real_cost = -190.492 ROKKY_TS4-scwrl costs 0 real_cost = -194.383 ROKKY_TS4 costs 0 real_cost = -200.215 ROKKY_TS3-scwrl costs 0 real_cost = -178.078 ROKKY_TS3 costs 0 real_cost = -180.966 ROKKY_TS2-scwrl costs 0 real_cost = -182.221 ROKKY_TS2 costs 0 real_cost = -192.518 ROKKY_TS1-scwrl costs 0 real_cost = -187.469 ROKKY_TS1 costs 0 real_cost = -187.648 ROBETTA_TS5-scwrl costs 0 real_cost = -270.854 ROBETTA_TS5 costs 0 real_cost = -274.435 ROBETTA_TS4-scwrl costs 0 real_cost = -381.86 ROBETTA_TS4 costs 0 real_cost = -387.768 ROBETTA_TS3-scwrl costs 0 real_cost = -250.518 ROBETTA_TS3 costs 0 real_cost = -253.837 ROBETTA_TS2-scwrl costs 0 real_cost = -392.314 ROBETTA_TS2 costs 0 real_cost = -398.936 ROBETTA_TS1-scwrl costs 0 real_cost = -369.028 ROBETTA_TS1 costs 0 real_cost = -373.384 RAPTOR_TS5-scwrl costs 0 real_cost = -208.01 RAPTOR_TS5 costs 0 real_cost = -219.104 RAPTOR_TS4-scwrl costs 0 real_cost = -204.209 RAPTOR_TS4 costs 0 real_cost = -193.559 RAPTOR_TS3-scwrl costs 0 real_cost = -199.142 RAPTOR_TS3 costs 0 real_cost = -197.171 RAPTOR_TS2-scwrl costs 0 real_cost = -360.464 RAPTOR_TS2 costs 0 real_cost = -366.443 RAPTOR_TS1-scwrl costs 0 real_cost = -357.862 RAPTOR_TS1 costs 0 real_cost = -365.683 RAPTORESS_TS5-scwrl costs 0 real_cost = -177.427 RAPTORESS_TS5 costs 0 real_cost = -183.808 RAPTORESS_TS4-scwrl costs 0 real_cost = -301.971 RAPTORESS_TS4 costs 0 real_cost = -301.448 RAPTORESS_TS3-scwrl costs 0 real_cost = -73.6274 RAPTORESS_TS3 costs 0 real_cost = -68.59 RAPTORESS_TS2-scwrl costs 0 real_cost = -343.997 RAPTORESS_TS2 costs 0 real_cost = -341.897 RAPTORESS_TS1-scwrl costs 0 real_cost = -357.862 RAPTORESS_TS1 costs 0 real_cost = -365.683 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -355.026 RAPTOR-ACE_TS5 costs 0 real_cost = -362.064 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -265.101 RAPTOR-ACE_TS4 costs 0 real_cost = -261.133 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -195.095 RAPTOR-ACE_TS3 costs 0 real_cost = -199.293 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -365.695 RAPTOR-ACE_TS2 costs 0 real_cost = -374.587 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -193.03 RAPTOR-ACE_TS1 costs 0 real_cost = -189.377 Pmodeller6_TS5-scwrl costs 0 real_cost = -282.851 Pmodeller6_TS5 costs 0 real_cost = -288.277 Pmodeller6_TS4-scwrl costs 0 real_cost = -282.851 Pmodeller6_TS4 costs 0 real_cost = -288.277 Pmodeller6_TS3-scwrl costs 0 real_cost = -282.851 Pmodeller6_TS3 costs 0 real_cost = -288.277 Pmodeller6_TS2-scwrl costs 0 real_cost = -282.851 Pmodeller6_TS2 costs 0 real_cost = -288.277 Pmodeller6_TS1-scwrl costs 0 real_cost = -282.851 Pmodeller6_TS1 costs 0 real_cost = -288.277 Phyre-2_TS5-scwrl costs 0 real_cost = -370.721 Phyre-2_TS5 costs 0 real_cost = -368.294 Phyre-2_TS4-scwrl costs 0 real_cost = -370.721 Phyre-2_TS4 costs 0 real_cost = -368.294 Phyre-2_TS3-scwrl costs 0 real_cost = -370.721 Phyre-2_TS3 costs 0 real_cost = -368.294 Phyre-2_TS2-scwrl costs 0 real_cost = -370.721 Phyre-2_TS2 costs 0 real_cost = -368.294 Phyre-2_TS1-scwrl costs 0 real_cost = -370.721 Phyre-2_TS1 costs 0 real_cost = -368.294 Phyre-1_TS1-scwrl costs 0 real_cost = -370.721 Phyre-1_TS1 costs 0 real_cost = -370.835 Pcons6_TS5-scwrl costs 0 real_cost = -366.832 Pcons6_TS5 costs 0 real_cost = -366.7 Pcons6_TS4-scwrl costs 0 real_cost = -359.965 Pcons6_TS4 costs 0 real_cost = -359.892 Pcons6_TS3-scwrl costs 0 real_cost = -359.965 Pcons6_TS3 costs 0 real_cost = -359.892 Pcons6_TS2-scwrl costs 0 real_cost = -359.965 Pcons6_TS2 costs 0 real_cost = -359.892 Pcons6_TS1-scwrl costs 0 real_cost = -359.965 Pcons6_TS1 costs 0 real_cost = -359.892 PROTINFO_TS5-scwrl costs 0 real_cost = -330.723 PROTINFO_TS5 costs 0 real_cost = -329.722 PROTINFO_TS4-scwrl costs 0 real_cost = -317.759 PROTINFO_TS4 costs 0 real_cost = -320.448 PROTINFO_TS3-scwrl costs 0 real_cost = -306.908 PROTINFO_TS3 costs 0 real_cost = -306.908 PROTINFO_TS2-scwrl costs 0 real_cost = -308.138 PROTINFO_TS2 costs 0 real_cost = -308.138 PROTINFO_TS1-scwrl costs 0 real_cost = -335.977 PROTINFO_TS1 costs 0 real_cost = -335.977 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -282.51 PROTINFO-AB_TS5 costs 0 real_cost = -289.967 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -307.308 PROTINFO-AB_TS4 costs 0 real_cost = -320.417 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -320.158 PROTINFO-AB_TS3 costs 0 real_cost = -329.505 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -343.125 PROTINFO-AB_TS2 costs 0 real_cost = -346.865 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -344.469 PROTINFO-AB_TS1 costs 0 real_cost = -355.274 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -166.685 NN_PUT_lab_TS1 costs 0 real_cost = -180.198 MetaTasser_TS2-scwrl costs 0 real_cost = -1.51489 MetaTasser_TS2 costs 0 real_cost = -14.9418 MetaTasser_TS1-scwrl costs 0 real_cost = -183.141 MetaTasser_TS1 costs 0 real_cost = -176.04 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 341.067 Ma-OPUS-server_TS5 costs 0 real_cost = 343.523 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 337.267 Ma-OPUS-server_TS4 costs 0 real_cost = 336.977 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -193.505 Ma-OPUS-server_TS3 costs 0 real_cost = -201.268 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -109.524 Ma-OPUS-server_TS2 costs 0 real_cost = -111.242 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -364.182 Ma-OPUS-server_TS1 costs 0 real_cost = -366.118 MIG_FROST_AL1-scwrl costs 0 real_cost = 192.523 MIG_FROST_AL1 costs 0 real_cost = 285.803 LOOPP_TS5-scwrl costs 0 real_cost = -243.651 LOOPP_TS5 costs 0 real_cost = -242.305 LOOPP_TS4-scwrl costs 0 real_cost = -287.45 LOOPP_TS4 costs 0 real_cost = -279.863 LOOPP_TS3-scwrl costs 0 real_cost = -323.832 LOOPP_TS3 costs 0 real_cost = -307.559 LOOPP_TS2-scwrl costs 0 real_cost = -337.879 LOOPP_TS2 costs 0 real_cost = -328.179 LOOPP_TS1-scwrl costs 0 real_cost = -321.46 LOOPP_TS1 costs 0 real_cost = -302.697 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -271.496 Huber-Torda-Server_TS5 costs 0 real_cost = -184.896 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -375.056 Huber-Torda-Server_TS4 costs 0 real_cost = -287.58 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -314.569 Huber-Torda-Server_TS3 costs 0 real_cost = -220.347 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -290.027 Huber-Torda-Server_TS2 costs 0 real_cost = -214.227 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -370.721 Huber-Torda-Server_TS1 costs 0 real_cost = -281.227 HHpred3_TS1-scwrl costs 0 real_cost = -323.073 HHpred3_TS1 costs 0 real_cost = -332.145 HHpred2_TS1-scwrl costs 0 real_cost = -323.073 HHpred2_TS1 costs 0 real_cost = -332.145 HHpred1_TS1-scwrl costs 0 real_cost = -359.45 HHpred1_TS1 costs 0 real_cost = -363.004 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -364.973 GeneSilicoMetaServer_TS5 costs 0 real_cost = -372.863 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -364.171 GeneSilicoMetaServer_TS4 costs 0 real_cost = -375.287 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -192.102 GeneSilicoMetaServer_TS3 costs 0 real_cost = -199.714 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -219.583 GeneSilicoMetaServer_TS2 costs 0 real_cost = -223.044 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -361.83 GeneSilicoMetaServer_TS1 costs 0 real_cost = -364.656 Frankenstein_TS4-scwrl costs 0 real_cost = -174.682 Frankenstein_TS4 costs 0 real_cost = -174.058 Frankenstein_TS3-scwrl costs 0 real_cost = -227.957 Frankenstein_TS3 costs 0 real_cost = -232.131 Frankenstein_TS2-scwrl costs 0 real_cost = -234.817 Frankenstein_TS2 costs 0 real_cost = -236.01 Frankenstein_TS1-scwrl costs 0 real_cost = -174.682 Frankenstein_TS1 costs 0 real_cost = -174.058 FUNCTION_TS5-scwrl costs 0 real_cost = -287.588 FUNCTION_TS5 costs 0 real_cost = -306.79 FUNCTION_TS4-scwrl costs 0 real_cost = -223.868 FUNCTION_TS4 costs 0 real_cost = -218.172 FUNCTION_TS3-scwrl costs 0 real_cost = -221.68 FUNCTION_TS3 costs 0 real_cost = -222.106 FUNCTION_TS2-scwrl costs 0 real_cost = -191.745 FUNCTION_TS2 costs 0 real_cost = -175.246 FUNCTION_TS1-scwrl costs 0 real_cost = -192.351 FUNCTION_TS1 costs 0 real_cost = -180.358 FUGUE_AL5-scwrl costs 0 real_cost = 356.859 FUGUE_AL5 costs 0 real_cost = 472.712 FUGUE_AL4-scwrl costs 0 real_cost = 443.062 FUGUE_AL4 costs 0 real_cost = 506.967 FUGUE_AL3-scwrl costs 0 real_cost = 540.023 FUGUE_AL3 costs 0 real_cost = 569.513 FUGUE_AL2-scwrl costs 0 real_cost = -354.552 FUGUE_AL2 costs 0 real_cost = -240.394 FUGUE_AL1-scwrl costs 0 real_cost = -375.695 FUGUE_AL1 costs 0 real_cost = -265.447 FUGMOD_TS5-scwrl costs 0 real_cost = 326.289 FUGMOD_TS5 costs 0 real_cost = 325.864 FUGMOD_TS4-scwrl costs 0 real_cost = 417.189 FUGMOD_TS4 costs 0 real_cost = 414.111 FUGMOD_TS3-scwrl costs 0 real_cost = 532.514 FUGMOD_TS3 costs 0 real_cost = 508.144 FUGMOD_TS2-scwrl costs 0 real_cost = -365.109 FUGMOD_TS2 costs 0 real_cost = -368.094 FUGMOD_TS1-scwrl costs 0 real_cost = -363.35 FUGMOD_TS1 costs 0 real_cost = -371.292 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 341.877 FPSOLVER-SERVER_TS1 costs 0 real_cost = 341.072 FORTE2_AL5-scwrl costs 0 real_cost = 362.983 FORTE2_AL5 costs 0 real_cost = 487.639 FORTE2_AL4-scwrl costs 0 real_cost = 348.19 FORTE2_AL4 costs 0 real_cost = 451.563 FORTE2_AL3-scwrl costs 0 real_cost = 425.82 FORTE2_AL3 costs 0 real_cost = 518.386 FORTE2_AL2-scwrl costs 0 real_cost = -60.6656 FORTE2_AL2 costs 0 real_cost = 26.9718 FORTE2_AL1-scwrl costs 0 real_cost = -285.264 FORTE2_AL1 costs 0 real_cost = -158.258 FORTE1_AL5-scwrl costs 0 real_cost = 359.536 FORTE1_AL5 costs 0 real_cost = 486.786 FORTE1_AL4-scwrl costs 0 real_cost = 339.222 FORTE1_AL4 costs 0 real_cost = 454.869 FORTE1_AL3-scwrl costs 0 real_cost = 425.068 FORTE1_AL3 costs 0 real_cost = 515.06 FORTE1_AL2-scwrl costs 0 real_cost = -59.6545 FORTE1_AL2 costs 0 real_cost = 30.2787 FORTE1_AL1-scwrl costs 0 real_cost = -285.264 FORTE1_AL1 costs 0 real_cost = -158.258 FOLDpro_TS5-scwrl costs 0 real_cost = -99.1521 FOLDpro_TS5 costs 0 real_cost = -95.7709 FOLDpro_TS4-scwrl costs 0 real_cost = -96.7289 FOLDpro_TS4 costs 0 real_cost = -105.101 FOLDpro_TS3-scwrl costs 0 real_cost = -31.7362 FOLDpro_TS3 costs 0 real_cost = -31.5156 FOLDpro_TS2-scwrl costs 0 real_cost = -248.532 FOLDpro_TS2 costs 0 real_cost = -257.036 FOLDpro_TS1-scwrl costs 0 real_cost = -323.462 FOLDpro_TS1 costs 0 real_cost = -336.071 FAMS_TS5-scwrl costs 0 real_cost = -287.588 FAMS_TS5 costs 0 real_cost = -306.79 FAMS_TS4-scwrl costs 0 real_cost = -325.896 FAMS_TS4 costs 0 real_cost = -344.923 FAMS_TS3-scwrl costs 0 real_cost = -320.94 FAMS_TS3 costs 0 real_cost = -344.654 FAMS_TS2-scwrl costs 0 real_cost = -352.485 FAMS_TS2 costs 0 real_cost = -361.082 FAMS_TS1-scwrl costs 0 real_cost = -257.088 FAMS_TS1 costs 0 real_cost = -272.508 FAMSD_TS5-scwrl costs 0 real_cost = -346.723 FAMSD_TS5 costs 0 real_cost = -359.27 FAMSD_TS4-scwrl costs 0 real_cost = -352.485 FAMSD_TS4 costs 0 real_cost = -361.082 FAMSD_TS3-scwrl costs 0 real_cost = -330.879 FAMSD_TS3 costs 0 real_cost = -346.488 FAMSD_TS2-scwrl costs 0 real_cost = -280.435 FAMSD_TS2 costs 0 real_cost = -295.467 FAMSD_TS1-scwrl costs 0 real_cost = -330.09 FAMSD_TS1 costs 0 real_cost = -342.519 Distill_TS5-scwrl costs 0 real_cost = 217.364 Distill_TS4-scwrl costs 0 real_cost = 209.704 Distill_TS3-scwrl costs 0 real_cost = 213.17 Distill_TS2-scwrl costs 0 real_cost = 207.686 Distill_TS1-scwrl costs 0 real_cost = 207.448 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -209.317 CaspIta-FOX_TS5 costs 0 real_cost = -224.995 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -292.928 CaspIta-FOX_TS4 costs 0 real_cost = -305.735 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -314.824 CaspIta-FOX_TS3 costs 0 real_cost = -327.161 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -287.69 CaspIta-FOX_TS2 costs 0 real_cost = -306.31 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -377.619 CaspIta-FOX_TS1 costs 0 real_cost = -394.689 CIRCLE_TS5-scwrl costs 0 real_cost = -253.78 CIRCLE_TS5 costs 0 real_cost = -275.541 CIRCLE_TS4-scwrl costs 0 real_cost = -320.94 CIRCLE_TS4 costs 0 real_cost = -344.654 CIRCLE_TS3-scwrl costs 0 real_cost = -336.16 CIRCLE_TS3 costs 0 real_cost = -356.32 CIRCLE_TS2-scwrl costs 0 real_cost = -332.54 CIRCLE_TS2 costs 0 real_cost = -352.528 CIRCLE_TS1-scwrl costs 0 real_cost = -325.896 CIRCLE_TS1 costs 0 real_cost = -344.923 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -282.188 Bilab-ENABLE_TS5 costs 0 real_cost = -282.188 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -282.719 Bilab-ENABLE_TS4 costs 0 real_cost = -282.719 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -279.827 Bilab-ENABLE_TS3 costs 0 real_cost = -279.827 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -357.235 Bilab-ENABLE_TS2 costs 0 real_cost = -357.235 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -359.563 Bilab-ENABLE_TS1 costs 0 real_cost = -359.563 BayesHH_TS1-scwrl costs 0 real_cost = -338.872 BayesHH_TS1 costs 0 real_cost = -351.065 ABIpro_TS5-scwrl costs 0 real_cost = 289.133 ABIpro_TS5 costs 0 real_cost = 288.779 ABIpro_TS4-scwrl costs 0 real_cost = 290.979 ABIpro_TS4 costs 0 real_cost = 290.979 ABIpro_TS3-scwrl costs 0 real_cost = 253.706 ABIpro_TS3 costs 0 real_cost = 253.7 ABIpro_TS2-scwrl costs 0 real_cost = 283.119 ABIpro_TS2 costs 0 real_cost = 281.613 ABIpro_TS1-scwrl costs 0 real_cost = 255.669 ABIpro_TS1 costs 0 real_cost = 255.177 3Dpro_TS5-scwrl costs 0 real_cost = -75.567 3Dpro_TS5 costs 0 real_cost = -81.2465 3Dpro_TS4-scwrl costs 0 real_cost = -201.869 3Dpro_TS4 costs 0 real_cost = -208.576 3Dpro_TS3-scwrl costs 0 real_cost = -26.7385 3Dpro_TS3 costs 0 real_cost = -35.544 3Dpro_TS2-scwrl costs 0 real_cost = -367.934 3Dpro_TS2 costs 0 real_cost = -385.363 3Dpro_TS1-scwrl costs 0 real_cost = -322.566 3Dpro_TS1 costs 0 real_cost = -331.177 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -194.274 3D-JIGSAW_TS5 costs 0 real_cost = -183.424 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -189.688 3D-JIGSAW_TS4 costs 0 real_cost = -184.011 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -203.368 3D-JIGSAW_TS3 costs 0 real_cost = -186.782 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -326.623 3D-JIGSAW_TS2 costs 0 real_cost = -322.098 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -332.257 3D-JIGSAW_TS1 costs 0 real_cost = -333.546 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -318.063 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -326.011 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -330.963 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -330.85 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -322.855 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -330.637 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -325.524 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -330.05 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -331.24 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -338.682 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -322.451 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -329.279 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -305.613 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -312.82 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -321.814 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -328.695 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -319.351 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -326.158 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -322.467 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -328.256 T0290.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -357.016 T0290.try3-opt2.pdb.gz costs 0 real_cost = -350.718 T0290.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -353.455 T0290.try3-opt1.pdb.gz costs 0 real_cost = -349.258 T0290.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -344.19 T0290.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -349.332 T0290.try2-opt2.pdb.gz costs 0 real_cost = -347.165 T0290.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -349.611 T0290.try2-opt1.pdb.gz costs 0 real_cost = -351.086 T0290.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -340.104 T0290.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -362.992 T0290.try1-opt2.pdb.gz costs 0 real_cost = -357.785 T0290.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -360.92 T0290.try1-opt1.pdb.gz costs 0 real_cost = -356.807 T0290.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -364.22 ../model5.ts-submitted costs 0 real_cost = -271.834 ../model4.ts-submitted costs 0 real_cost = -313.991 ../model3.ts-submitted costs 0 real_cost = -244.82 ../model2.ts-submitted costs 0 real_cost = -357.013 ../model1.ts-submitted costs 0 real_cost = -350.766 align5 costs 0 real_cost = -216.173 align4 costs 0 real_cost = -240.268 align3 costs 0 real_cost = -271.814 align2 costs 0 real_cost = -329.573 align1 costs 0 real_cost = -245.968 T0290.try1-opt2.pdb costs 0 real_cost = -357.788 model5-scwrl costs 0 real_cost = -271.448 model5.ts-submitted costs 0 real_cost = -271.834 model4-scwrl costs 0 real_cost = -264.677 model4.ts-submitted costs 0 real_cost = -313.991 model3-scwrl costs 0 real_cost = -180.804 model3.ts-submitted costs 0 real_cost = -244.82 model2-scwrl costs 0 real_cost = -346.023 model2.ts-submitted costs 0 real_cost = -357.013 model1-scwrl costs 0 real_cost = -346.128 model1.ts-submitted costs 0 real_cost = -350.76 2gw2A costs 0 real_cost = -893.8 # command:CPU_time= 890.354 sec, elapsed time= 1319.89 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0290/ -e s/START_COL/1/ \ -e s/REAL_PDB/2gw2A/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175010321 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.81112 sec, elapsed time= 5.83665 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.8891 sec, elapsed time= 5.92709 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0290 numbered 1 through 173 Created new target T0290 from T0290.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0290_1.real.pdb looking for model 1 Skipped atom 215, because occupancy 5.0000000e-01 <= existing 0.500 in T0290_1.real.pdb Skipped atom 219, because occupancy 0.500 <= existing 0.500 in T0290_1.real.pdb Skipped atom 221, because occupancy 0.500 <= existing 0.500 in T0290_1.real.pdb # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.09477 sec, elapsed time= 8.15793 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -97.3054 # GDT_score(maxd=8,maxw=2.9)= -99.1524 # GDT_score(maxd=8,maxw=3.2)= -98.2782 # GDT_score(maxd=8,maxw=3.5)= -97.0556 # GDT_score(maxd=10,maxw=3.8)= -97.3952 # GDT_score(maxd=10,maxw=4)= -96.4931 # GDT_score(maxd=10,maxw=4.2)= -95.4146 # GDT_score(maxd=12,maxw=4.3)= -96.5351 # GDT_score(maxd=12,maxw=4.5)= -95.4707 # GDT_score(maxd=12,maxw=4.7)= -94.1986 # GDT_score(maxd=14,maxw=5.2)= -92.4285 # GDT_score(maxd=14,maxw=5.5)= -89.8277 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1964.000 rmsd (weighted)= 1.458 (unweighted)= 10.235 superimposing iter= 1 total_weight= 7775.802 rmsd (weighted)= 0.519 (unweighted)= 10.255 superimposing iter= 2 total_weight= 2570.614 rmsd (weighted)= 0.364 (unweighted)= 10.259 superimposing iter= 3 total_weight= 1466.791 rmsd (weighted)= 0.341 (unweighted)= 10.262 superimposing iter= 4 total_weight= 1324.934 rmsd (weighted)= 0.336 (unweighted)= 10.264 superimposing iter= 5 total_weight= 1299.887 rmsd (weighted)= 0.335 (unweighted)= 10.266 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_561298112.pdb -s /var/tmp/to_scwrl_561298112.seq -o /var/tmp/from_scwrl_561298112.pdb > /var/tmp/scwrl_561298112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561298112.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -97.4551 # GDT_score(maxd=8,maxw=2.9)= -99.1917 # GDT_score(maxd=8,maxw=3.2)= -98.4062 # GDT_score(maxd=8,maxw=3.5)= -97.1984 # GDT_score(maxd=10,maxw=3.8)= -97.526 # GDT_score(maxd=10,maxw=4)= -96.6154 # GDT_score(maxd=10,maxw=4.2)= -95.5296 # GDT_score(maxd=12,maxw=4.3)= -96.6464 # GDT_score(maxd=12,maxw=4.5)= -95.5796 # GDT_score(maxd=12,maxw=4.7)= -94.3034 # GDT_score(maxd=14,maxw=5.2)= -92.5503 # GDT_score(maxd=14,maxw=5.5)= -89.9393 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_402808055.pdb -s /var/tmp/to_scwrl_402808055.seq -o /var/tmp/from_scwrl_402808055.pdb > /var/tmp/scwrl_402808055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402808055.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.928144 # GDT_score = -88.6228 # GDT_score(maxd=8,maxw=2.9)= -89.1604 # GDT_score(maxd=8,maxw=3.2)= -88.6079 # GDT_score(maxd=8,maxw=3.5)= -87.8588 # GDT_score(maxd=10,maxw=3.8)= -88.3449 # GDT_score(maxd=10,maxw=4)= -87.6161 # GDT_score(maxd=10,maxw=4.2)= -86.7156 # GDT_score(maxd=12,maxw=4.3)= -87.7903 # GDT_score(maxd=12,maxw=4.5)= -86.8826 # GDT_score(maxd=12,maxw=4.7)= -85.6267 # GDT_score(maxd=14,maxw=5.2)= -83.9046 # GDT_score(maxd=14,maxw=5.5)= -81.3839 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1130421814.pdb -s /var/tmp/to_scwrl_1130421814.seq -o /var/tmp/from_scwrl_1130421814.pdb > /var/tmp/scwrl_1130421814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130421814.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.922156 # GDT_score = -91.3174 # GDT_score(maxd=8,maxw=2.9)= -91.8096 # GDT_score(maxd=8,maxw=3.2)= -91.5563 # GDT_score(maxd=8,maxw=3.5)= -91.1915 # GDT_score(maxd=10,maxw=3.8)= -91.3086 # GDT_score(maxd=10,maxw=4)= -90.956 # GDT_score(maxd=10,maxw=4.2)= -90.4823 # GDT_score(maxd=12,maxw=4.3)= -90.9594 # GDT_score(maxd=12,maxw=4.5)= -90.4819 # GDT_score(maxd=12,maxw=4.7)= -89.7737 # GDT_score(maxd=14,maxw=5.2)= -88.6444 # GDT_score(maxd=14,maxw=5.5)= -86.839 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_187632892.pdb -s /var/tmp/to_scwrl_187632892.seq -o /var/tmp/from_scwrl_187632892.pdb > /var/tmp/scwrl_187632892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_187632892.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.946108 # GDT_score = -90.1198 # GDT_score(maxd=8,maxw=2.9)= -90.8283 # GDT_score(maxd=8,maxw=3.2)= -90.1236 # GDT_score(maxd=8,maxw=3.5)= -89.1728 # GDT_score(maxd=10,maxw=3.8)= -89.7087 # GDT_score(maxd=10,maxw=4)= -88.9054 # GDT_score(maxd=10,maxw=4.2)= -87.9488 # GDT_score(maxd=12,maxw=4.3)= -89.1013 # GDT_score(maxd=12,maxw=4.5)= -88.1435 # GDT_score(maxd=12,maxw=4.7)= -86.924 # GDT_score(maxd=14,maxw=5.2)= -85.3444 # GDT_score(maxd=14,maxw=5.5)= -82.7362 # command:# request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_763422983.pdb -s /var/tmp/to_scwrl_763422983.seq -o /var/tmp/from_scwrl_763422983.pdb > /var/tmp/scwrl_763422983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_763422983.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0290.try1-opt2.pdb looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -97.4551 # GDT_score(maxd=8,maxw=2.9)= -99.3322 # GDT_score(maxd=8,maxw=3.2)= -98.4193 # GDT_score(maxd=8,maxw=3.5)= -97.1852 # GDT_score(maxd=10,maxw=3.8)= -97.5158 # GDT_score(maxd=10,maxw=4)= -96.6009 # GDT_score(maxd=10,maxw=4.2)= -95.4428 # GDT_score(maxd=12,maxw=4.3)= -96.6304 # GDT_score(maxd=12,maxw=4.5)= -95.4828 # GDT_score(maxd=12,maxw=4.7)= -94.0927 # GDT_score(maxd=14,maxw=5.2)= -92.1794 # GDT_score(maxd=14,maxw=5.5)= -89.5105 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1964.000 rmsd (weighted)= 1.297 (unweighted)= 10.228 superimposing iter= 1 total_weight= 7101.888 rmsd (weighted)= 0.500 (unweighted)= 10.240 superimposing iter= 2 total_weight= 2451.566 rmsd (weighted)= 0.358 (unweighted)= 10.244 superimposing iter= 3 total_weight= 1529.806 rmsd (weighted)= 0.327 (unweighted)= 10.246 superimposing iter= 4 total_weight= 1340.051 rmsd (weighted)= 0.320 (unweighted)= 10.247 superimposing iter= 5 total_weight= 1299.018 rmsd (weighted)= 0.318 (unweighted)= 10.248 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0290)E41.C and (T0290)K42.C only 0.000 apart, marking (T0290)K42.C as missing WARNING: atoms too close: (T0290)K42.N and (T0290)G43.N only 0.000 apart, marking (T0290)K42.N as missing WARNING: atoms too close: (T0290)K42.CA and (T0290)G43.CA only 0.000 apart, marking (T0290)K42.CA as missing WARNING: atoms too close: (T0290)Q151.C and (T0290)K152.C only 0.000 apart, marking (T0290)K152.C as missing WARNING: atoms too close: (T0290)K152.N and (T0290)T153.N only 0.000 apart, marking (T0290)K152.N as missing WARNING: atoms too close: (T0290)K152.CA and (T0290)T153.CA only 0.000 apart, marking (T0290)K152.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.952096 # GDT_score = -91.018 # GDT_score(maxd=8,maxw=2.9)= -91.6078 # GDT_score(maxd=8,maxw=3.2)= -91.0495 # GDT_score(maxd=8,maxw=3.5)= -90.2938 # GDT_score(maxd=10,maxw=3.8)= -90.7794 # GDT_score(maxd=10,maxw=4)= -90.058 # GDT_score(maxd=10,maxw=4.2)= -89.1454 # GDT_score(maxd=12,maxw=4.3)= -90.2293 # GDT_score(maxd=12,maxw=4.5)= -89.3076 # GDT_score(maxd=12,maxw=4.7)= -88.0264 # GDT_score(maxd=14,maxw=5.2)= -86.2637 # GDT_score(maxd=14,maxw=5.5)= -83.6502 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0290)A156.C and (T0290)S157.C only 0.000 apart, marking (T0290)S157.C as missing WARNING: atoms too close: (T0290)S157.N and (T0290)K158.N only 0.000 apart, marking (T0290)S157.N as missing WARNING: atoms too close: (T0290)S157.CA and (T0290)K158.CA only 0.000 apart, marking (T0290)S157.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.952096 # GDT_score = -94.1617 # GDT_score(maxd=8,maxw=2.9)= -94.7784 # GDT_score(maxd=8,maxw=3.2)= -94.4766 # GDT_score(maxd=8,maxw=3.5)= -94.0434 # GDT_score(maxd=10,maxw=3.8)= -94.1737 # GDT_score(maxd=10,maxw=4)= -93.8043 # GDT_score(maxd=10,maxw=4.2)= -93.3051 # GDT_score(maxd=12,maxw=4.3)= -93.814 # GDT_score(maxd=12,maxw=4.5)= -93.3103 # GDT_score(maxd=12,maxw=4.7)= -92.5703 # GDT_score(maxd=14,maxw=5.2)= -91.3674 # GDT_score(maxd=14,maxw=5.5)= -89.4809 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0290)G45.C and (T0290)H53.C only 0.000 apart, marking (T0290)H53.C as missing WARNING: atoms too close: (T0290)K46.N and (T0290)Y54.N only 0.000 apart, marking (T0290)K46.N as missing WARNING: atoms too close: (T0290)K46.CA and (T0290)Y54.CA only 0.000 apart, marking (T0290)K46.CA as missing WARNING: atoms too close: (T0290)K152.C and (T0290)T153.C only 0.000 apart, marking (T0290)T153.C as missing WARNING: atoms too close: (T0290)T153.N and (T0290)D154.N only 0.000 apart, marking (T0290)T153.N as missing WARNING: atoms too close: (T0290)T153.CA and (T0290)D154.CA only 0.000 apart, marking (T0290)T153.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0290)E41.C and (T0290)Q49.C only 0.000 apart, marking (T0290)Q49.C as missing WARNING: atoms too close: (T0290)K42.N and (T0290)K50.N only 0.000 apart, marking (T0290)K42.N as missing WARNING: atoms too close: (T0290)K42.CA and (T0290)K50.CA only 0.000 apart, marking (T0290)K42.CA as missing WARNING: atoms too close: (T0290)Q151.C and (T0290)K152.C only 0.000 apart, marking (T0290)K152.C as missing WARNING: atoms too close: (T0290)K152.N and (T0290)T153.N only 0.000 apart, marking (T0290)K152.N as missing WARNING: atoms too close: (T0290)K152.CA and (T0290)T153.CA only 0.000 apart, marking (T0290)K152.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0290.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0290)G45.C and (T0290)H53.C only 0.000 apart, marking (T0290)H53.C as missing WARNING: atoms too close: (T0290)K46.N and (T0290)Y54.N only 0.000 apart, marking (T0290)K46.N as missing WARNING: atoms too close: (T0290)K46.CA and (T0290)Y54.CA only 0.000 apart, marking (T0290)K46.CA as missing WARNING: atoms too close: (T0290)H98.C and (T0290)N99.C only 0.000 apart, marking (T0290)N99.C as missing WARNING: atoms too close: (T0290)N99.N and (T0290)A100.N only 0.000 apart, marking (T0290)N99.N as missing WARNING: atoms too close: (T0290)N99.CA and (T0290)A100.CA only 0.000 apart, marking (T0290)N99.CA as missing # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0290.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0290.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_448715919.pdb -s /var/tmp/to_scwrl_448715919.seq -o /var/tmp/from_scwrl_448715919.pdb > /var/tmp/scwrl_448715919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_448715919.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1993419132.pdb -s /var/tmp/to_scwrl_1993419132.seq -o /var/tmp/from_scwrl_1993419132.pdb > /var/tmp/scwrl_1993419132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993419132.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_533935236.pdb -s /var/tmp/to_scwrl_533935236.seq -o /var/tmp/from_scwrl_533935236.pdb > /var/tmp/scwrl_533935236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_533935236.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2026882911.pdb -s /var/tmp/to_scwrl_2026882911.seq -o /var/tmp/from_scwrl_2026882911.pdb > /var/tmp/scwrl_2026882911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2026882911.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_428298985.pdb -s /var/tmp/to_scwrl_428298985.seq -o /var/tmp/from_scwrl_428298985.pdb > /var/tmp/scwrl_428298985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428298985.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2077668614.pdb -s /var/tmp/to_scwrl_2077668614.seq -o /var/tmp/from_scwrl_2077668614.pdb > /var/tmp/scwrl_2077668614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077668614.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_228565052.pdb -s /var/tmp/to_scwrl_228565052.seq -o /var/tmp/from_scwrl_228565052.pdb > /var/tmp/scwrl_228565052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_228565052.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1637126726.pdb -s /var/tmp/to_scwrl_1637126726.seq -o /var/tmp/from_scwrl_1637126726.pdb > /var/tmp/scwrl_1637126726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1637126726.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1422684089.pdb -s /var/tmp/to_scwrl_1422684089.seq -o /var/tmp/from_scwrl_1422684089.pdb > /var/tmp/scwrl_1422684089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1422684089.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1900514626.pdb -s /var/tmp/to_scwrl_1900514626.seq -o /var/tmp/from_scwrl_1900514626.pdb > /var/tmp/scwrl_1900514626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1900514626.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1249668137.pdb -s /var/tmp/to_scwrl_1249668137.seq -o /var/tmp/from_scwrl_1249668137.pdb > /var/tmp/scwrl_1249668137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249668137.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1499061119.pdb -s /var/tmp/to_scwrl_1499061119.seq -o /var/tmp/from_scwrl_1499061119.pdb > /var/tmp/scwrl_1499061119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499061119.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1068560010.pdb -s /var/tmp/to_scwrl_1068560010.seq -o /var/tmp/from_scwrl_1068560010.pdb > /var/tmp/scwrl_1068560010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1068560010.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_111465010.pdb -s /var/tmp/to_scwrl_111465010.seq -o /var/tmp/from_scwrl_111465010.pdb > /var/tmp/scwrl_111465010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111465010.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1133536381.pdb -s /var/tmp/to_scwrl_1133536381.seq -o /var/tmp/from_scwrl_1133536381.pdb > /var/tmp/scwrl_1133536381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133536381.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1110924849.pdb -s /var/tmp/to_scwrl_1110924849.seq -o /var/tmp/from_scwrl_1110924849.pdb > /var/tmp/scwrl_1110924849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110924849.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_676432257.pdb -s /var/tmp/to_scwrl_676432257.seq -o /var/tmp/from_scwrl_676432257.pdb > /var/tmp/scwrl_676432257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_676432257.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2040270658.pdb -s /var/tmp/to_scwrl_2040270658.seq -o /var/tmp/from_scwrl_2040270658.pdb > /var/tmp/scwrl_2040270658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2040270658.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1424313246.pdb -s /var/tmp/to_scwrl_1424313246.seq -o /var/tmp/from_scwrl_1424313246.pdb > /var/tmp/scwrl_1424313246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424313246.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1012127167.pdb -s /var/tmp/to_scwrl_1012127167.seq -o /var/tmp/from_scwrl_1012127167.pdb > /var/tmp/scwrl_1012127167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1012127167.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_19474604.pdb -s /var/tmp/to_scwrl_19474604.seq -o /var/tmp/from_scwrl_19474604.pdb > /var/tmp/scwrl_19474604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_19474604.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_634098871.pdb -s /var/tmp/to_scwrl_634098871.seq -o /var/tmp/from_scwrl_634098871.pdb > /var/tmp/scwrl_634098871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634098871.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1474791993.pdb -s /var/tmp/to_scwrl_1474791993.seq -o /var/tmp/from_scwrl_1474791993.pdb > /var/tmp/scwrl_1474791993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474791993.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_874431516.pdb -s /var/tmp/to_scwrl_874431516.seq -o /var/tmp/from_scwrl_874431516.pdb > /var/tmp/scwrl_874431516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874431516.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1496661004.pdb -s /var/tmp/to_scwrl_1496661004.seq -o /var/tmp/from_scwrl_1496661004.pdb > /var/tmp/scwrl_1496661004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1496661004.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1415601104.pdb -s /var/tmp/to_scwrl_1415601104.seq -o /var/tmp/from_scwrl_1415601104.pdb > /var/tmp/scwrl_1415601104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415601104.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1435729627.pdb -s /var/tmp/to_scwrl_1435729627.seq -o /var/tmp/from_scwrl_1435729627.pdb > /var/tmp/scwrl_1435729627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1435729627.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1899469059.pdb -s /var/tmp/to_scwrl_1899469059.seq -o /var/tmp/from_scwrl_1899469059.pdb > /var/tmp/scwrl_1899469059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899469059.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_398539272.pdb -s /var/tmp/to_scwrl_398539272.seq -o /var/tmp/from_scwrl_398539272.pdb > /var/tmp/scwrl_398539272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_398539272.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1623362519.pdb -s /var/tmp/to_scwrl_1623362519.seq -o /var/tmp/from_scwrl_1623362519.pdb > /var/tmp/scwrl_1623362519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623362519.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_515408395.pdb -s /var/tmp/to_scwrl_515408395.seq -o /var/tmp/from_scwrl_515408395.pdb > /var/tmp/scwrl_515408395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515408395.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_847255192.pdb -s /var/tmp/to_scwrl_847255192.seq -o /var/tmp/from_scwrl_847255192.pdb > /var/tmp/scwrl_847255192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847255192.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1469298004.pdb -s /var/tmp/to_scwrl_1469298004.seq -o /var/tmp/from_scwrl_1469298004.pdb > /var/tmp/scwrl_1469298004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469298004.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1049343631.pdb -s /var/tmp/to_scwrl_1049343631.seq -o /var/tmp/from_scwrl_1049343631.pdb > /var/tmp/scwrl_1049343631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1049343631.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_726654456.pdb -s /var/tmp/to_scwrl_726654456.seq -o /var/tmp/from_scwrl_726654456.pdb > /var/tmp/scwrl_726654456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_726654456.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1897596989.pdb -s /var/tmp/to_scwrl_1897596989.seq -o /var/tmp/from_scwrl_1897596989.pdb > /var/tmp/scwrl_1897596989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1897596989.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_979528598.pdb -s /var/tmp/to_scwrl_979528598.seq -o /var/tmp/from_scwrl_979528598.pdb > /var/tmp/scwrl_979528598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979528598.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_955219508.pdb -s /var/tmp/to_scwrl_955219508.seq -o /var/tmp/from_scwrl_955219508.pdb > /var/tmp/scwrl_955219508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_955219508.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1387240068.pdb -s /var/tmp/to_scwrl_1387240068.seq -o /var/tmp/from_scwrl_1387240068.pdb > /var/tmp/scwrl_1387240068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387240068.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_254729040.pdb -s /var/tmp/to_scwrl_254729040.seq -o /var/tmp/from_scwrl_254729040.pdb > /var/tmp/scwrl_254729040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_254729040.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_708250487.pdb -s /var/tmp/to_scwrl_708250487.seq -o /var/tmp/from_scwrl_708250487.pdb > /var/tmp/scwrl_708250487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708250487.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_489424560.pdb -s /var/tmp/to_scwrl_489424560.seq -o /var/tmp/from_scwrl_489424560.pdb > /var/tmp/scwrl_489424560.log Error: Couldn't open file /var/tmp/from_scwrl_489424560.pdb or /var/tmp/from_scwrl_489424560.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_489424560_b.pdb or decoys//var/tmp/from_scwrl_489424560_b.pdb.gz for input Trying /var/tmp/from_scwrl_489424560_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_489424560_b.pdb or /var/tmp/from_scwrl_489424560_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_489424560_a.pdb or decoys//var/tmp/from_scwrl_489424560_a.pdb.gz for input Trying /var/tmp/from_scwrl_489424560_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_489424560_a.pdb or /var/tmp/from_scwrl_489424560_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_489424560.pdb or /var/tmp/from_scwrl_489424560_b.pdb or /var/tmp/from_scwrl_489424560_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1753790160.pdb -s /var/tmp/to_scwrl_1753790160.seq -o /var/tmp/from_scwrl_1753790160.pdb > /var/tmp/scwrl_1753790160.log Error: Couldn't open file /var/tmp/from_scwrl_1753790160.pdb or /var/tmp/from_scwrl_1753790160.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1753790160_b.pdb or decoys//var/tmp/from_scwrl_1753790160_b.pdb.gz for input Trying /var/tmp/from_scwrl_1753790160_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1753790160_b.pdb or /var/tmp/from_scwrl_1753790160_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1753790160_a.pdb or decoys//var/tmp/from_scwrl_1753790160_a.pdb.gz for input Trying /var/tmp/from_scwrl_1753790160_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1753790160_a.pdb or /var/tmp/from_scwrl_1753790160_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1753790160.pdb or /var/tmp/from_scwrl_1753790160_b.pdb or /var/tmp/from_scwrl_1753790160_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1776810496.pdb -s /var/tmp/to_scwrl_1776810496.seq -o /var/tmp/from_scwrl_1776810496.pdb > /var/tmp/scwrl_1776810496.log Error: Couldn't open file /var/tmp/from_scwrl_1776810496.pdb or /var/tmp/from_scwrl_1776810496.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1776810496_b.pdb or decoys//var/tmp/from_scwrl_1776810496_b.pdb.gz for input Trying /var/tmp/from_scwrl_1776810496_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1776810496_b.pdb or /var/tmp/from_scwrl_1776810496_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1776810496_a.pdb or decoys//var/tmp/from_scwrl_1776810496_a.pdb.gz for input Trying /var/tmp/from_scwrl_1776810496_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1776810496_a.pdb or /var/tmp/from_scwrl_1776810496_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1776810496.pdb or /var/tmp/from_scwrl_1776810496_b.pdb or /var/tmp/from_scwrl_1776810496_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_600889570.pdb -s /var/tmp/to_scwrl_600889570.seq -o /var/tmp/from_scwrl_600889570.pdb > /var/tmp/scwrl_600889570.log Error: Couldn't open file /var/tmp/from_scwrl_600889570.pdb or /var/tmp/from_scwrl_600889570.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_600889570_b.pdb or decoys//var/tmp/from_scwrl_600889570_b.pdb.gz for input Trying /var/tmp/from_scwrl_600889570_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_600889570_b.pdb or /var/tmp/from_scwrl_600889570_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_600889570_a.pdb or decoys//var/tmp/from_scwrl_600889570_a.pdb.gz for input Trying /var/tmp/from_scwrl_600889570_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_600889570_a.pdb or /var/tmp/from_scwrl_600889570_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_600889570.pdb or /var/tmp/from_scwrl_600889570_b.pdb or /var/tmp/from_scwrl_600889570_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_739842895.pdb -s /var/tmp/to_scwrl_739842895.seq -o /var/tmp/from_scwrl_739842895.pdb > /var/tmp/scwrl_739842895.log Error: Couldn't open file /var/tmp/from_scwrl_739842895.pdb or /var/tmp/from_scwrl_739842895.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_739842895_b.pdb or decoys//var/tmp/from_scwrl_739842895_b.pdb.gz for input Trying /var/tmp/from_scwrl_739842895_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_739842895_b.pdb or /var/tmp/from_scwrl_739842895_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_739842895_a.pdb or decoys//var/tmp/from_scwrl_739842895_a.pdb.gz for input Trying /var/tmp/from_scwrl_739842895_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_739842895_a.pdb or /var/tmp/from_scwrl_739842895_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_739842895.pdb or /var/tmp/from_scwrl_739842895_b.pdb or /var/tmp/from_scwrl_739842895_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_740251699.pdb -s /var/tmp/to_scwrl_740251699.seq -o /var/tmp/from_scwrl_740251699.pdb > /var/tmp/scwrl_740251699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_740251699.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1277321826.pdb -s /var/tmp/to_scwrl_1277321826.seq -o /var/tmp/from_scwrl_1277321826.pdb > /var/tmp/scwrl_1277321826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1277321826.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_632629906.pdb -s /var/tmp/to_scwrl_632629906.seq -o /var/tmp/from_scwrl_632629906.pdb > /var/tmp/scwrl_632629906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632629906.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_17081298.pdb -s /var/tmp/to_scwrl_17081298.seq -o /var/tmp/from_scwrl_17081298.pdb > /var/tmp/scwrl_17081298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_17081298.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_141965346.pdb -s /var/tmp/to_scwrl_141965346.seq -o /var/tmp/from_scwrl_141965346.pdb > /var/tmp/scwrl_141965346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141965346.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_652104511.pdb -s /var/tmp/to_scwrl_652104511.seq -o /var/tmp/from_scwrl_652104511.pdb > /var/tmp/scwrl_652104511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_652104511.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_651180169.pdb -s /var/tmp/to_scwrl_651180169.seq -o /var/tmp/from_scwrl_651180169.pdb > /var/tmp/scwrl_651180169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_651180169.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1616757339.pdb -s /var/tmp/to_scwrl_1616757339.seq -o /var/tmp/from_scwrl_1616757339.pdb > /var/tmp/scwrl_1616757339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1616757339.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1526536026.pdb -s /var/tmp/to_scwrl_1526536026.seq -o /var/tmp/from_scwrl_1526536026.pdb > /var/tmp/scwrl_1526536026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526536026.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_357526.pdb -s /var/tmp/to_scwrl_357526.seq -o /var/tmp/from_scwrl_357526.pdb > /var/tmp/scwrl_357526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_357526.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_884874797.pdb -s /var/tmp/to_scwrl_884874797.seq -o /var/tmp/from_scwrl_884874797.pdb > /var/tmp/scwrl_884874797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_884874797.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_814782008.pdb -s /var/tmp/to_scwrl_814782008.seq -o /var/tmp/from_scwrl_814782008.pdb > /var/tmp/scwrl_814782008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_814782008.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1899826585.pdb -s /var/tmp/to_scwrl_1899826585.seq -o /var/tmp/from_scwrl_1899826585.pdb > /var/tmp/scwrl_1899826585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899826585.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1283414069.pdb -s /var/tmp/to_scwrl_1283414069.seq -o /var/tmp/from_scwrl_1283414069.pdb > /var/tmp/scwrl_1283414069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1283414069.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_290660880.pdb -s /var/tmp/to_scwrl_290660880.seq -o /var/tmp/from_scwrl_290660880.pdb > /var/tmp/scwrl_290660880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_290660880.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_267751333.pdb -s /var/tmp/to_scwrl_267751333.seq -o /var/tmp/from_scwrl_267751333.pdb > /var/tmp/scwrl_267751333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267751333.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2130669261.pdb -s /var/tmp/to_scwrl_2130669261.seq -o /var/tmp/from_scwrl_2130669261.pdb > /var/tmp/scwrl_2130669261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130669261.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1759958885.pdb -s /var/tmp/to_scwrl_1759958885.seq -o /var/tmp/from_scwrl_1759958885.pdb > /var/tmp/scwrl_1759958885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759958885.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1317094964.pdb -s /var/tmp/to_scwrl_1317094964.seq -o /var/tmp/from_scwrl_1317094964.pdb > /var/tmp/scwrl_1317094964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1317094964.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_709840070.pdb -s /var/tmp/to_scwrl_709840070.seq -o /var/tmp/from_scwrl_709840070.pdb > /var/tmp/scwrl_709840070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709840070.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1510072227.pdb -s /var/tmp/to_scwrl_1510072227.seq -o /var/tmp/from_scwrl_1510072227.pdb > /var/tmp/scwrl_1510072227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1510072227.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_149139915.pdb -s /var/tmp/to_scwrl_149139915.seq -o /var/tmp/from_scwrl_149139915.pdb > /var/tmp/scwrl_149139915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_149139915.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1665059577.pdb -s /var/tmp/to_scwrl_1665059577.seq -o /var/tmp/from_scwrl_1665059577.pdb > /var/tmp/scwrl_1665059577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665059577.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_749828650.pdb -s /var/tmp/to_scwrl_749828650.seq -o /var/tmp/from_scwrl_749828650.pdb > /var/tmp/scwrl_749828650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749828650.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_403868956.pdb -s /var/tmp/to_scwrl_403868956.seq -o /var/tmp/from_scwrl_403868956.pdb > /var/tmp/scwrl_403868956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_403868956.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_225826417.pdb -s /var/tmp/to_scwrl_225826417.seq -o /var/tmp/from_scwrl_225826417.pdb > /var/tmp/scwrl_225826417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225826417.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1239253209.pdb -s /var/tmp/to_scwrl_1239253209.seq -o /var/tmp/from_scwrl_1239253209.pdb > /var/tmp/scwrl_1239253209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239253209.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_10175469.pdb -s /var/tmp/to_scwrl_10175469.seq -o /var/tmp/from_scwrl_10175469.pdb > /var/tmp/scwrl_10175469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_10175469.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2002636913.pdb -s /var/tmp/to_scwrl_2002636913.seq -o /var/tmp/from_scwrl_2002636913.pdb > /var/tmp/scwrl_2002636913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2002636913.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1840142779.pdb -s /var/tmp/to_scwrl_1840142779.seq -o /var/tmp/from_scwrl_1840142779.pdb > /var/tmp/scwrl_1840142779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1840142779.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_750018364.pdb -s /var/tmp/to_scwrl_750018364.seq -o /var/tmp/from_scwrl_750018364.pdb > /var/tmp/scwrl_750018364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_750018364.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_595404965.pdb -s /var/tmp/to_scwrl_595404965.seq -o /var/tmp/from_scwrl_595404965.pdb > /var/tmp/scwrl_595404965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_595404965.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_969980959.pdb -s /var/tmp/to_scwrl_969980959.seq -o /var/tmp/from_scwrl_969980959.pdb > /var/tmp/scwrl_969980959.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969980959.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1382648270.pdb -s /var/tmp/to_scwrl_1382648270.seq -o /var/tmp/from_scwrl_1382648270.pdb > /var/tmp/scwrl_1382648270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382648270.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_612486263.pdb -s /var/tmp/to_scwrl_612486263.seq -o /var/tmp/from_scwrl_612486263.pdb > /var/tmp/scwrl_612486263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612486263.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1111946305.pdb -s /var/tmp/to_scwrl_1111946305.seq -o /var/tmp/from_scwrl_1111946305.pdb > /var/tmp/scwrl_1111946305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111946305.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2034752781.pdb -s /var/tmp/to_scwrl_2034752781.seq -o /var/tmp/from_scwrl_2034752781.pdb > /var/tmp/scwrl_2034752781.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034752781.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1263666431.pdb -s /var/tmp/to_scwrl_1263666431.seq -o /var/tmp/from_scwrl_1263666431.pdb > /var/tmp/scwrl_1263666431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1263666431.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_581219998.pdb -s /var/tmp/to_scwrl_581219998.seq -o /var/tmp/from_scwrl_581219998.pdb > /var/tmp/scwrl_581219998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_581219998.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1413805160.pdb -s /var/tmp/to_scwrl_1413805160.seq -o /var/tmp/from_scwrl_1413805160.pdb > /var/tmp/scwrl_1413805160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1413805160.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1264023958.pdb -s /var/tmp/to_scwrl_1264023958.seq -o /var/tmp/from_scwrl_1264023958.pdb > /var/tmp/scwrl_1264023958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1264023958.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1466094795.pdb -s /var/tmp/to_scwrl_1466094795.seq -o /var/tmp/from_scwrl_1466094795.pdb > /var/tmp/scwrl_1466094795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1466094795.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_81103521.pdb -s /var/tmp/to_scwrl_81103521.seq -o /var/tmp/from_scwrl_81103521.pdb > /var/tmp/scwrl_81103521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_81103521.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1016366897.pdb -s /var/tmp/to_scwrl_1016366897.seq -o /var/tmp/from_scwrl_1016366897.pdb > /var/tmp/scwrl_1016366897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016366897.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_602025218.pdb -s /var/tmp/to_scwrl_602025218.seq -o /var/tmp/from_scwrl_602025218.pdb > /var/tmp/scwrl_602025218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602025218.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_371764402.pdb -s /var/tmp/to_scwrl_371764402.seq -o /var/tmp/from_scwrl_371764402.pdb > /var/tmp/scwrl_371764402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371764402.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1284118230.pdb -s /var/tmp/to_scwrl_1284118230.seq -o /var/tmp/from_scwrl_1284118230.pdb > /var/tmp/scwrl_1284118230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284118230.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_585210832.pdb -s /var/tmp/to_scwrl_585210832.seq -o /var/tmp/from_scwrl_585210832.pdb > /var/tmp/scwrl_585210832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_585210832.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2131723287.pdb -s /var/tmp/to_scwrl_2131723287.seq -o /var/tmp/from_scwrl_2131723287.pdb > /var/tmp/scwrl_2131723287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131723287.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_453729548.pdb -s /var/tmp/to_scwrl_453729548.seq -o /var/tmp/from_scwrl_453729548.pdb > /var/tmp/scwrl_453729548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_453729548.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1295050901.pdb -s /var/tmp/to_scwrl_1295050901.seq -o /var/tmp/from_scwrl_1295050901.pdb > /var/tmp/scwrl_1295050901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1295050901.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1494311867.pdb -s /var/tmp/to_scwrl_1494311867.seq -o /var/tmp/from_scwrl_1494311867.pdb > /var/tmp/scwrl_1494311867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494311867.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_602869463.pdb -s /var/tmp/to_scwrl_602869463.seq -o /var/tmp/from_scwrl_602869463.pdb > /var/tmp/scwrl_602869463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602869463.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_812626832.pdb -s /var/tmp/to_scwrl_812626832.seq -o /var/tmp/from_scwrl_812626832.pdb > /var/tmp/scwrl_812626832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_812626832.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_96656870.pdb -s /var/tmp/to_scwrl_96656870.seq -o /var/tmp/from_scwrl_96656870.pdb > /var/tmp/scwrl_96656870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_96656870.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1006738419.pdb -s /var/tmp/to_scwrl_1006738419.seq -o /var/tmp/from_scwrl_1006738419.pdb > /var/tmp/scwrl_1006738419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006738419.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1038453249.pdb -s /var/tmp/to_scwrl_1038453249.seq -o /var/tmp/from_scwrl_1038453249.pdb > /var/tmp/scwrl_1038453249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038453249.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1335910079.pdb -s /var/tmp/to_scwrl_1335910079.seq -o /var/tmp/from_scwrl_1335910079.pdb > /var/tmp/scwrl_1335910079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1335910079.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1016913888.pdb -s /var/tmp/to_scwrl_1016913888.seq -o /var/tmp/from_scwrl_1016913888.pdb > /var/tmp/scwrl_1016913888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016913888.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_893606515.pdb -s /var/tmp/to_scwrl_893606515.seq -o /var/tmp/from_scwrl_893606515.pdb > /var/tmp/scwrl_893606515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_893606515.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1028569212.pdb -s /var/tmp/to_scwrl_1028569212.seq -o /var/tmp/from_scwrl_1028569212.pdb > /var/tmp/scwrl_1028569212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028569212.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1766932252.pdb -s /var/tmp/to_scwrl_1766932252.seq -o /var/tmp/from_scwrl_1766932252.pdb > /var/tmp/scwrl_1766932252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766932252.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1489011479.pdb -s /var/tmp/to_scwrl_1489011479.seq -o /var/tmp/from_scwrl_1489011479.pdb > /var/tmp/scwrl_1489011479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489011479.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1998550171.pdb -s /var/tmp/to_scwrl_1998550171.seq -o /var/tmp/from_scwrl_1998550171.pdb > /var/tmp/scwrl_1998550171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1998550171.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1002096876.pdb -s /var/tmp/to_scwrl_1002096876.seq -o /var/tmp/from_scwrl_1002096876.pdb > /var/tmp/scwrl_1002096876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1002096876.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2101497742.pdb -s /var/tmp/to_scwrl_2101497742.seq -o /var/tmp/from_scwrl_2101497742.pdb > /var/tmp/scwrl_2101497742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101497742.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_963012830.pdb -s /var/tmp/to_scwrl_963012830.seq -o /var/tmp/from_scwrl_963012830.pdb > /var/tmp/scwrl_963012830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963012830.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_889366010.pdb -s /var/tmp/to_scwrl_889366010.seq -o /var/tmp/from_scwrl_889366010.pdb > /var/tmp/scwrl_889366010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889366010.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1217680526.pdb -s /var/tmp/to_scwrl_1217680526.seq -o /var/tmp/from_scwrl_1217680526.pdb > /var/tmp/scwrl_1217680526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1217680526.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1544232827.pdb -s /var/tmp/to_scwrl_1544232827.seq -o /var/tmp/from_scwrl_1544232827.pdb > /var/tmp/scwrl_1544232827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544232827.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_155687523.pdb -s /var/tmp/to_scwrl_155687523.seq -o /var/tmp/from_scwrl_155687523.pdb > /var/tmp/scwrl_155687523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155687523.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_334220838.pdb -s /var/tmp/to_scwrl_334220838.seq -o /var/tmp/from_scwrl_334220838.pdb > /var/tmp/scwrl_334220838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334220838.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_862843976.pdb -s /var/tmp/to_scwrl_862843976.seq -o /var/tmp/from_scwrl_862843976.pdb > /var/tmp/scwrl_862843976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862843976.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_236791045.pdb -s /var/tmp/to_scwrl_236791045.seq -o /var/tmp/from_scwrl_236791045.pdb > /var/tmp/scwrl_236791045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236791045.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1350587735.pdb -s /var/tmp/to_scwrl_1350587735.seq -o /var/tmp/from_scwrl_1350587735.pdb > /var/tmp/scwrl_1350587735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350587735.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1464869193.pdb -s /var/tmp/to_scwrl_1464869193.seq -o /var/tmp/from_scwrl_1464869193.pdb > /var/tmp/scwrl_1464869193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1464869193.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_608555447.pdb -s /var/tmp/to_scwrl_608555447.seq -o /var/tmp/from_scwrl_608555447.pdb > /var/tmp/scwrl_608555447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608555447.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_487222319.pdb -s /var/tmp/to_scwrl_487222319.seq -o /var/tmp/from_scwrl_487222319.pdb > /var/tmp/scwrl_487222319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487222319.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2050080025.pdb -s /var/tmp/to_scwrl_2050080025.seq -o /var/tmp/from_scwrl_2050080025.pdb > /var/tmp/scwrl_2050080025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050080025.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_592795087.pdb -s /var/tmp/to_scwrl_592795087.seq -o /var/tmp/from_scwrl_592795087.pdb > /var/tmp/scwrl_592795087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592795087.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_940951867.pdb -s /var/tmp/to_scwrl_940951867.seq -o /var/tmp/from_scwrl_940951867.pdb > /var/tmp/scwrl_940951867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_940951867.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1197647279.pdb -s /var/tmp/to_scwrl_1197647279.seq -o /var/tmp/from_scwrl_1197647279.pdb > /var/tmp/scwrl_1197647279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197647279.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2087106954.pdb -s /var/tmp/to_scwrl_2087106954.seq -o /var/tmp/from_scwrl_2087106954.pdb > /var/tmp/scwrl_2087106954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087106954.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1543821329.pdb -s /var/tmp/to_scwrl_1543821329.seq -o /var/tmp/from_scwrl_1543821329.pdb > /var/tmp/scwrl_1543821329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543821329.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2010274111.pdb -s /var/tmp/to_scwrl_2010274111.seq -o /var/tmp/from_scwrl_2010274111.pdb > /var/tmp/scwrl_2010274111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2010274111.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_36280178.pdb -s /var/tmp/to_scwrl_36280178.seq -o /var/tmp/from_scwrl_36280178.pdb > /var/tmp/scwrl_36280178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_36280178.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_403076102.pdb -s /var/tmp/to_scwrl_403076102.seq -o /var/tmp/from_scwrl_403076102.pdb > /var/tmp/scwrl_403076102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_403076102.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_901243713.pdb -s /var/tmp/to_scwrl_901243713.seq -o /var/tmp/from_scwrl_901243713.pdb > /var/tmp/scwrl_901243713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901243713.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1372190257.pdb -s /var/tmp/to_scwrl_1372190257.seq -o /var/tmp/from_scwrl_1372190257.pdb > /var/tmp/scwrl_1372190257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372190257.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1419989989.pdb -s /var/tmp/to_scwrl_1419989989.seq -o /var/tmp/from_scwrl_1419989989.pdb > /var/tmp/scwrl_1419989989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419989989.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1794850227.pdb -s /var/tmp/to_scwrl_1794850227.seq -o /var/tmp/from_scwrl_1794850227.pdb > /var/tmp/scwrl_1794850227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794850227.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_253275823.pdb -s /var/tmp/to_scwrl_253275823.seq -o /var/tmp/from_scwrl_253275823.pdb > /var/tmp/scwrl_253275823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_253275823.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1039438595.pdb -s /var/tmp/to_scwrl_1039438595.seq -o /var/tmp/from_scwrl_1039438595.pdb > /var/tmp/scwrl_1039438595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039438595.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1136378059.pdb -s /var/tmp/to_scwrl_1136378059.seq -o /var/tmp/from_scwrl_1136378059.pdb > /var/tmp/scwrl_1136378059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1136378059.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_104342347.pdb -s /var/tmp/to_scwrl_104342347.seq -o /var/tmp/from_scwrl_104342347.pdb > /var/tmp/scwrl_104342347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104342347.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2041535470.pdb -s /var/tmp/to_scwrl_2041535470.seq -o /var/tmp/from_scwrl_2041535470.pdb > /var/tmp/scwrl_2041535470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041535470.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1090392154.pdb -s /var/tmp/to_scwrl_1090392154.seq -o /var/tmp/from_scwrl_1090392154.pdb > /var/tmp/scwrl_1090392154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090392154.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1067355177.pdb -s /var/tmp/to_scwrl_1067355177.seq -o /var/tmp/from_scwrl_1067355177.pdb > /var/tmp/scwrl_1067355177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1067355177.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_783417833.pdb -s /var/tmp/to_scwrl_783417833.seq -o /var/tmp/from_scwrl_783417833.pdb > /var/tmp/scwrl_783417833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_783417833.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_160589035.pdb -s /var/tmp/to_scwrl_160589035.seq -o /var/tmp/from_scwrl_160589035.pdb > /var/tmp/scwrl_160589035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_160589035.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_464104357.pdb -s /var/tmp/to_scwrl_464104357.seq -o /var/tmp/from_scwrl_464104357.pdb > /var/tmp/scwrl_464104357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464104357.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_939105357.pdb -s /var/tmp/to_scwrl_939105357.seq -o /var/tmp/from_scwrl_939105357.pdb > /var/tmp/scwrl_939105357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939105357.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_494809873.pdb -s /var/tmp/to_scwrl_494809873.seq -o /var/tmp/from_scwrl_494809873.pdb > /var/tmp/scwrl_494809873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494809873.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1326948333.pdb -s /var/tmp/to_scwrl_1326948333.seq -o /var/tmp/from_scwrl_1326948333.pdb > /var/tmp/scwrl_1326948333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1326948333.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1175896401.pdb -s /var/tmp/to_scwrl_1175896401.seq -o /var/tmp/from_scwrl_1175896401.pdb > /var/tmp/scwrl_1175896401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1175896401.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1845397608.pdb -s /var/tmp/to_scwrl_1845397608.seq -o /var/tmp/from_scwrl_1845397608.pdb > /var/tmp/scwrl_1845397608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845397608.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_644333880.pdb -s /var/tmp/to_scwrl_644333880.seq -o /var/tmp/from_scwrl_644333880.pdb > /var/tmp/scwrl_644333880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644333880.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1784451848.pdb -s /var/tmp/to_scwrl_1784451848.seq -o /var/tmp/from_scwrl_1784451848.pdb > /var/tmp/scwrl_1784451848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784451848.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_185136280.pdb -s /var/tmp/to_scwrl_185136280.seq -o /var/tmp/from_scwrl_185136280.pdb > /var/tmp/scwrl_185136280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_185136280.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_546930259.pdb -s /var/tmp/to_scwrl_546930259.seq -o /var/tmp/from_scwrl_546930259.pdb > /var/tmp/scwrl_546930259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546930259.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_229763288.pdb -s /var/tmp/to_scwrl_229763288.seq -o /var/tmp/from_scwrl_229763288.pdb > /var/tmp/scwrl_229763288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229763288.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1126088146.pdb -s /var/tmp/to_scwrl_1126088146.seq -o /var/tmp/from_scwrl_1126088146.pdb > /var/tmp/scwrl_1126088146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126088146.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1744577538.pdb -s /var/tmp/to_scwrl_1744577538.seq -o /var/tmp/from_scwrl_1744577538.pdb > /var/tmp/scwrl_1744577538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744577538.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_169386595.pdb -s /var/tmp/to_scwrl_169386595.seq -o /var/tmp/from_scwrl_169386595.pdb > /var/tmp/scwrl_169386595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169386595.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_522425830.pdb -s /var/tmp/to_scwrl_522425830.seq -o /var/tmp/from_scwrl_522425830.pdb > /var/tmp/scwrl_522425830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_522425830.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1607368003.pdb -s /var/tmp/to_scwrl_1607368003.seq -o /var/tmp/from_scwrl_1607368003.pdb > /var/tmp/scwrl_1607368003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1607368003.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_205666773.pdb -s /var/tmp/to_scwrl_205666773.seq -o /var/tmp/from_scwrl_205666773.pdb > /var/tmp/scwrl_205666773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_205666773.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_925501932.pdb -s /var/tmp/to_scwrl_925501932.seq -o /var/tmp/from_scwrl_925501932.pdb > /var/tmp/scwrl_925501932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925501932.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_361128069.pdb -s /var/tmp/to_scwrl_361128069.seq -o /var/tmp/from_scwrl_361128069.pdb > /var/tmp/scwrl_361128069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_361128069.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1577857031.pdb -s /var/tmp/to_scwrl_1577857031.seq -o /var/tmp/from_scwrl_1577857031.pdb > /var/tmp/scwrl_1577857031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1577857031.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_198008274.pdb -s /var/tmp/to_scwrl_198008274.seq -o /var/tmp/from_scwrl_198008274.pdb > /var/tmp/scwrl_198008274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198008274.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_8494650.pdb -s /var/tmp/to_scwrl_8494650.seq -o /var/tmp/from_scwrl_8494650.pdb > /var/tmp/scwrl_8494650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_8494650.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1831132854.pdb -s /var/tmp/to_scwrl_1831132854.seq -o /var/tmp/from_scwrl_1831132854.pdb > /var/tmp/scwrl_1831132854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831132854.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1237446869.pdb -s /var/tmp/to_scwrl_1237446869.seq -o /var/tmp/from_scwrl_1237446869.pdb > /var/tmp/scwrl_1237446869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1237446869.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1144872709.pdb -s /var/tmp/to_scwrl_1144872709.seq -o /var/tmp/from_scwrl_1144872709.pdb > /var/tmp/scwrl_1144872709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144872709.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1935475201.pdb -s /var/tmp/to_scwrl_1935475201.seq -o /var/tmp/from_scwrl_1935475201.pdb > /var/tmp/scwrl_1935475201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1935475201.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1131498692.pdb -s /var/tmp/to_scwrl_1131498692.seq -o /var/tmp/from_scwrl_1131498692.pdb > /var/tmp/scwrl_1131498692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1131498692.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_87781218.pdb -s /var/tmp/to_scwrl_87781218.seq -o /var/tmp/from_scwrl_87781218.pdb > /var/tmp/scwrl_87781218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87781218.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_855346731.pdb -s /var/tmp/to_scwrl_855346731.seq -o /var/tmp/from_scwrl_855346731.pdb > /var/tmp/scwrl_855346731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_855346731.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1914916526.pdb -s /var/tmp/to_scwrl_1914916526.seq -o /var/tmp/from_scwrl_1914916526.pdb > /var/tmp/scwrl_1914916526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914916526.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_248370253.pdb -s /var/tmp/to_scwrl_248370253.seq -o /var/tmp/from_scwrl_248370253.pdb > /var/tmp/scwrl_248370253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_248370253.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1319451087.pdb -s /var/tmp/to_scwrl_1319451087.seq -o /var/tmp/from_scwrl_1319451087.pdb > /var/tmp/scwrl_1319451087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1319451087.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_706538236.pdb -s /var/tmp/to_scwrl_706538236.seq -o /var/tmp/from_scwrl_706538236.pdb > /var/tmp/scwrl_706538236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706538236.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_743180126.pdb -s /var/tmp/to_scwrl_743180126.seq -o /var/tmp/from_scwrl_743180126.pdb > /var/tmp/scwrl_743180126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743180126.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_498915774.pdb -s /var/tmp/to_scwrl_498915774.seq -o /var/tmp/from_scwrl_498915774.pdb > /var/tmp/scwrl_498915774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498915774.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1882434637.pdb -s /var/tmp/to_scwrl_1882434637.seq -o /var/tmp/from_scwrl_1882434637.pdb > /var/tmp/scwrl_1882434637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882434637.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_441094088.pdb -s /var/tmp/to_scwrl_441094088.seq -o /var/tmp/from_scwrl_441094088.pdb > /var/tmp/scwrl_441094088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441094088.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1143249654.pdb -s /var/tmp/to_scwrl_1143249654.seq -o /var/tmp/from_scwrl_1143249654.pdb > /var/tmp/scwrl_1143249654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1143249654.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1519402838.pdb -s /var/tmp/to_scwrl_1519402838.seq -o /var/tmp/from_scwrl_1519402838.pdb > /var/tmp/scwrl_1519402838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1519402838.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_626230368.pdb -s /var/tmp/to_scwrl_626230368.seq -o /var/tmp/from_scwrl_626230368.pdb > /var/tmp/scwrl_626230368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_626230368.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1690179913.pdb -s /var/tmp/to_scwrl_1690179913.seq -o /var/tmp/from_scwrl_1690179913.pdb > /var/tmp/scwrl_1690179913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690179913.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1749166126.pdb -s /var/tmp/to_scwrl_1749166126.seq -o /var/tmp/from_scwrl_1749166126.pdb > /var/tmp/scwrl_1749166126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749166126.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1752318515.pdb -s /var/tmp/to_scwrl_1752318515.seq -o /var/tmp/from_scwrl_1752318515.pdb > /var/tmp/scwrl_1752318515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1752318515.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1287273804.pdb -s /var/tmp/to_scwrl_1287273804.seq -o /var/tmp/from_scwrl_1287273804.pdb > /var/tmp/scwrl_1287273804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287273804.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1918552721.pdb -s /var/tmp/to_scwrl_1918552721.seq -o /var/tmp/from_scwrl_1918552721.pdb > /var/tmp/scwrl_1918552721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1918552721.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_127260698.pdb -s /var/tmp/to_scwrl_127260698.seq -o /var/tmp/from_scwrl_127260698.pdb > /var/tmp/scwrl_127260698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127260698.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_747158161.pdb -s /var/tmp/to_scwrl_747158161.seq -o /var/tmp/from_scwrl_747158161.pdb > /var/tmp/scwrl_747158161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747158161.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2124219495.pdb -s /var/tmp/to_scwrl_2124219495.seq -o /var/tmp/from_scwrl_2124219495.pdb > /var/tmp/scwrl_2124219495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124219495.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1052762630.pdb -s /var/tmp/to_scwrl_1052762630.seq -o /var/tmp/from_scwrl_1052762630.pdb > /var/tmp/scwrl_1052762630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052762630.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1108286230.pdb -s /var/tmp/to_scwrl_1108286230.seq -o /var/tmp/from_scwrl_1108286230.pdb > /var/tmp/scwrl_1108286230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108286230.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1554592879.pdb -s /var/tmp/to_scwrl_1554592879.seq -o /var/tmp/from_scwrl_1554592879.pdb > /var/tmp/scwrl_1554592879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554592879.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1250770903.pdb -s /var/tmp/to_scwrl_1250770903.seq -o /var/tmp/from_scwrl_1250770903.pdb > /var/tmp/scwrl_1250770903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250770903.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1116780880.pdb -s /var/tmp/to_scwrl_1116780880.seq -o /var/tmp/from_scwrl_1116780880.pdb > /var/tmp/scwrl_1116780880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116780880.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1238242086.pdb -s /var/tmp/to_scwrl_1238242086.seq -o /var/tmp/from_scwrl_1238242086.pdb > /var/tmp/scwrl_1238242086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1238242086.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_340734126.pdb -s /var/tmp/to_scwrl_340734126.seq -o /var/tmp/from_scwrl_340734126.pdb > /var/tmp/scwrl_340734126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_340734126.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_114169943.pdb -s /var/tmp/to_scwrl_114169943.seq -o /var/tmp/from_scwrl_114169943.pdb > /var/tmp/scwrl_114169943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_114169943.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1026233641.pdb -s /var/tmp/to_scwrl_1026233641.seq -o /var/tmp/from_scwrl_1026233641.pdb > /var/tmp/scwrl_1026233641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026233641.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1472232819.pdb -s /var/tmp/to_scwrl_1472232819.seq -o /var/tmp/from_scwrl_1472232819.pdb > /var/tmp/scwrl_1472232819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472232819.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_201951161.pdb -s /var/tmp/to_scwrl_201951161.seq -o /var/tmp/from_scwrl_201951161.pdb > /var/tmp/scwrl_201951161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201951161.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1881580371.pdb -s /var/tmp/to_scwrl_1881580371.seq -o /var/tmp/from_scwrl_1881580371.pdb > /var/tmp/scwrl_1881580371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1881580371.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1239665698.pdb -s /var/tmp/to_scwrl_1239665698.seq -o /var/tmp/from_scwrl_1239665698.pdb > /var/tmp/scwrl_1239665698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239665698.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_450321414.pdb -s /var/tmp/to_scwrl_450321414.seq -o /var/tmp/from_scwrl_450321414.pdb > /var/tmp/scwrl_450321414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_450321414.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1053547812.pdb -s /var/tmp/to_scwrl_1053547812.seq -o /var/tmp/from_scwrl_1053547812.pdb > /var/tmp/scwrl_1053547812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053547812.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1946203934.pdb -s /var/tmp/to_scwrl_1946203934.seq -o /var/tmp/from_scwrl_1946203934.pdb > /var/tmp/scwrl_1946203934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946203934.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1193501540.pdb -s /var/tmp/to_scwrl_1193501540.seq -o /var/tmp/from_scwrl_1193501540.pdb > /var/tmp/scwrl_1193501540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193501540.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1552463586.pdb -s /var/tmp/to_scwrl_1552463586.seq -o /var/tmp/from_scwrl_1552463586.pdb > /var/tmp/scwrl_1552463586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552463586.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1681154924.pdb -s /var/tmp/to_scwrl_1681154924.seq -o /var/tmp/from_scwrl_1681154924.pdb > /var/tmp/scwrl_1681154924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681154924.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1634595628.pdb -s /var/tmp/to_scwrl_1634595628.seq -o /var/tmp/from_scwrl_1634595628.pdb > /var/tmp/scwrl_1634595628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1634595628.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_548229594.pdb -s /var/tmp/to_scwrl_548229594.seq -o /var/tmp/from_scwrl_548229594.pdb > /var/tmp/scwrl_548229594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_548229594.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1053074116.pdb -s /var/tmp/to_scwrl_1053074116.seq -o /var/tmp/from_scwrl_1053074116.pdb > /var/tmp/scwrl_1053074116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053074116.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_113342349.pdb -s /var/tmp/to_scwrl_113342349.seq -o /var/tmp/from_scwrl_113342349.pdb > /var/tmp/scwrl_113342349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_113342349.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_90925860.pdb -s /var/tmp/to_scwrl_90925860.seq -o /var/tmp/from_scwrl_90925860.pdb > /var/tmp/scwrl_90925860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_90925860.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_654756595.pdb -s /var/tmp/to_scwrl_654756595.seq -o /var/tmp/from_scwrl_654756595.pdb > /var/tmp/scwrl_654756595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_654756595.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1865660864.pdb -s /var/tmp/to_scwrl_1865660864.seq -o /var/tmp/from_scwrl_1865660864.pdb > /var/tmp/scwrl_1865660864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865660864.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1378199664.pdb -s /var/tmp/to_scwrl_1378199664.seq -o /var/tmp/from_scwrl_1378199664.pdb > /var/tmp/scwrl_1378199664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378199664.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_425825669.pdb -s /var/tmp/to_scwrl_425825669.seq -o /var/tmp/from_scwrl_425825669.pdb > /var/tmp/scwrl_425825669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_425825669.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1992921562.pdb -s /var/tmp/to_scwrl_1992921562.seq -o /var/tmp/from_scwrl_1992921562.pdb > /var/tmp/scwrl_1992921562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992921562.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2125357826.pdb -s /var/tmp/to_scwrl_2125357826.seq -o /var/tmp/from_scwrl_2125357826.pdb > /var/tmp/scwrl_2125357826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125357826.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_402561517.pdb -s /var/tmp/to_scwrl_402561517.seq -o /var/tmp/from_scwrl_402561517.pdb > /var/tmp/scwrl_402561517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402561517.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_898200545.pdb -s /var/tmp/to_scwrl_898200545.seq -o /var/tmp/from_scwrl_898200545.pdb > /var/tmp/scwrl_898200545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898200545.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1086160409.pdb -s /var/tmp/to_scwrl_1086160409.seq -o /var/tmp/from_scwrl_1086160409.pdb > /var/tmp/scwrl_1086160409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1086160409.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1957154396.pdb -s /var/tmp/to_scwrl_1957154396.seq -o /var/tmp/from_scwrl_1957154396.pdb > /var/tmp/scwrl_1957154396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1957154396.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1487802.pdb -s /var/tmp/to_scwrl_1487802.seq -o /var/tmp/from_scwrl_1487802.pdb > /var/tmp/scwrl_1487802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1487802.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_55457643.pdb -s /var/tmp/to_scwrl_55457643.seq -o /var/tmp/from_scwrl_55457643.pdb > /var/tmp/scwrl_55457643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_55457643.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1047912836.pdb -s /var/tmp/to_scwrl_1047912836.seq -o /var/tmp/from_scwrl_1047912836.pdb > /var/tmp/scwrl_1047912836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1047912836.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_342221928.pdb -s /var/tmp/to_scwrl_342221928.seq -o /var/tmp/from_scwrl_342221928.pdb > /var/tmp/scwrl_342221928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342221928.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_169627586.pdb -s /var/tmp/to_scwrl_169627586.seq -o /var/tmp/from_scwrl_169627586.pdb > /var/tmp/scwrl_169627586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169627586.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2074146476.pdb -s /var/tmp/to_scwrl_2074146476.seq -o /var/tmp/from_scwrl_2074146476.pdb > /var/tmp/scwrl_2074146476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074146476.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1814454747.pdb -s /var/tmp/to_scwrl_1814454747.seq -o /var/tmp/from_scwrl_1814454747.pdb > /var/tmp/scwrl_1814454747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814454747.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_371578748.pdb -s /var/tmp/to_scwrl_371578748.seq -o /var/tmp/from_scwrl_371578748.pdb > /var/tmp/scwrl_371578748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371578748.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1808243200.pdb -s /var/tmp/to_scwrl_1808243200.seq -o /var/tmp/from_scwrl_1808243200.pdb > /var/tmp/scwrl_1808243200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1808243200.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_906636799.pdb -s /var/tmp/to_scwrl_906636799.seq -o /var/tmp/from_scwrl_906636799.pdb > /var/tmp/scwrl_906636799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906636799.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_821900162.pdb -s /var/tmp/to_scwrl_821900162.seq -o /var/tmp/from_scwrl_821900162.pdb > /var/tmp/scwrl_821900162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821900162.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_714307366.pdb -s /var/tmp/to_scwrl_714307366.seq -o /var/tmp/from_scwrl_714307366.pdb > /var/tmp/scwrl_714307366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714307366.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_705357086.pdb -s /var/tmp/to_scwrl_705357086.seq -o /var/tmp/from_scwrl_705357086.pdb > /var/tmp/scwrl_705357086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_705357086.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_2015401702.pdb -s /var/tmp/to_scwrl_2015401702.seq -o /var/tmp/from_scwrl_2015401702.pdb > /var/tmp/scwrl_2015401702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015401702.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_119287305.pdb -s /var/tmp/to_scwrl_119287305.seq -o /var/tmp/from_scwrl_119287305.pdb > /var/tmp/scwrl_119287305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_119287305.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_239028363.pdb -s /var/tmp/to_scwrl_239028363.seq -o /var/tmp/from_scwrl_239028363.pdb > /var/tmp/scwrl_239028363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_239028363.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1502513683.pdb -s /var/tmp/to_scwrl_1502513683.seq -o /var/tmp/from_scwrl_1502513683.pdb > /var/tmp/scwrl_1502513683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502513683.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_667516899.pdb -s /var/tmp/to_scwrl_667516899.seq -o /var/tmp/from_scwrl_667516899.pdb > /var/tmp/scwrl_667516899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_667516899.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1292102478.pdb -s /var/tmp/to_scwrl_1292102478.seq -o /var/tmp/from_scwrl_1292102478.pdb > /var/tmp/scwrl_1292102478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1292102478.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1615856033.pdb -s /var/tmp/to_scwrl_1615856033.seq -o /var/tmp/from_scwrl_1615856033.pdb > /var/tmp/scwrl_1615856033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615856033.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_758442759.pdb -s /var/tmp/to_scwrl_758442759.seq -o /var/tmp/from_scwrl_758442759.pdb > /var/tmp/scwrl_758442759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_758442759.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0290 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 156 ; scwrl3 -i /var/tmp/to_scwrl_1946859073.pdb -s /var/tmp/to_scwrl_1946859073.seq -o /var/tmp/from_scwrl_1946859073.pdb > /var/tmp/scwrl_1946859073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946859073.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 34.7437 sec, elapsed time= 459.039 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -370.816 shub_TS1 costs 0 real_cost = -370.459 nFOLD_TS5-scwrl costs 0 real_cost = 392.755 nFOLD_TS5 costs 0 real_cost = 454.597 nFOLD_TS4-scwrl costs 0 real_cost = 419.163 nFOLD_TS4 costs 0 real_cost = 474.982 nFOLD_TS3-scwrl costs 0 real_cost = -103.224 nFOLD_TS3 costs 0 real_cost = -49.2883 nFOLD_TS2-scwrl costs 0 real_cost = -66.2531 nFOLD_TS2 costs 0 real_cost = 15.99 nFOLD_TS1-scwrl costs 0 real_cost = -275.254 nFOLD_TS1 costs 0 real_cost = -176.624 mGen-3D_TS1-scwrl costs 0 real_cost = -274.955 mGen-3D_TS1 costs 0 real_cost = -177.263 keasar-server_TS5-scwrl costs 0 real_cost = -264.937 keasar-server_TS5 costs 0 real_cost = -260.038 keasar-server_TS4-scwrl costs 0 real_cost = -322.632 keasar-server_TS4 costs 0 real_cost = -314.289 keasar-server_TS3-scwrl costs 0 real_cost = -251.579 keasar-server_TS3 costs 0 real_cost = -242.601 keasar-server_TS2-scwrl costs 0 real_cost = -260.078 keasar-server_TS2 costs 0 real_cost = -253.36 keasar-server_TS1-scwrl costs 0 real_cost = -251.579 keasar-server_TS1 costs 0 real_cost = -242.601 karypis.srv_TS5-scwrl costs 0 real_cost = -208.585 karypis.srv_TS5 costs 0 real_cost = -208.594 karypis.srv_TS4-scwrl costs 0 real_cost = -288.484 karypis.srv_TS4 costs 0 real_cost = -291.451 karypis.srv_TS3-scwrl costs 0 real_cost = -286.237 karypis.srv_TS3 costs 0 real_cost = -287.871 karypis.srv_TS2-scwrl costs 0 real_cost = -311.668 karypis.srv_TS2 costs 0 real_cost = -311.689 karypis.srv_TS1-scwrl costs 0 real_cost = -372.822 karypis.srv_TS1 costs 0 real_cost = -374 karypis.srv.4_TS1-scwrl costs 0 real_cost = 321.261 karypis.srv.4_TS1 costs 0 real_cost = 321.261 karypis.srv.2_TS5-scwrl costs 0 real_cost = -373.604 karypis.srv.2_TS5 costs 0 real_cost = -373.604 karypis.srv.2_TS4-scwrl costs 0 real_cost = -353.29 karypis.srv.2_TS4 costs 0 real_cost = -353.347 karypis.srv.2_TS3-scwrl costs 0 real_cost = -278.274 karypis.srv.2_TS3 costs 0 real_cost = -278.289 karypis.srv.2_TS2-scwrl costs 0 real_cost = -371.807 karypis.srv.2_TS2 costs 0 real_cost = -371.849 karypis.srv.2_TS1-scwrl costs 0 real_cost = -373.604 karypis.srv.2_TS1 costs 0 real_cost = -374.762 gtg_AL5-scwrl costs 0 real_cost = -313.421 gtg_AL5 costs 0 real_cost = -159.206 gtg_AL4-scwrl costs 0 real_cost = -270.67 gtg_AL4 costs 0 real_cost = -129.767 gtg_AL3-scwrl costs 0 real_cost = -293.167 gtg_AL3 costs 0 real_cost = -146.025 gtg_AL2-scwrl costs 0 real_cost = -315.087 gtg_AL2 costs 0 real_cost = -158.972 gtg_AL1-scwrl costs 0 real_cost = -367.457 gtg_AL1 costs 0 real_cost = -250.876 forecast-s_AL5-scwrl costs 0 real_cost = 420.62 forecast-s_AL5 costs 0 real_cost = 503.718 forecast-s_AL4-scwrl costs 0 real_cost = 398.282 forecast-s_AL4 costs 0 real_cost = 488.308 forecast-s_AL3-scwrl costs 0 real_cost = 391.911 forecast-s_AL3 costs 0 real_cost = 496.041 forecast-s_AL2-scwrl costs 0 real_cost = -40.7658 forecast-s_AL2 costs 0 real_cost = 56.3815 forecast-s_AL1-scwrl costs 0 real_cost = -278.045 forecast-s_AL1 costs 0 real_cost = -157.979 beautshotbase_TS1-scwrl costs 0 real_cost = -341.798 beautshotbase_TS1 costs 0 real_cost = -337.851 beautshot_TS1-scwrl costs 0 real_cost = -330.865 beautshot_TS1 costs 0 real_cost = -329.28 Zhang-Server_TS5-scwrl costs 0 real_cost = -372.479 Zhang-Server_TS5 costs 0 real_cost = -387.484 Zhang-Server_TS4-scwrl costs 0 real_cost = -373.049 Zhang-Server_TS4 costs 0 real_cost = -383.449 Zhang-Server_TS3-scwrl costs 0 real_cost = -365.288 Zhang-Server_TS3 costs 0 real_cost = -372.633 Zhang-Server_TS2-scwrl costs 0 real_cost = -371.773 Zhang-Server_TS2 costs 0 real_cost = -374.945 Zhang-Server_TS1-scwrl costs 0 real_cost = -370.858 Zhang-Server_TS1 costs 0 real_cost = -368.455 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -258.54 UNI-EID_sfst_AL5 costs 0 real_cost = -138.562 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -369.994 UNI-EID_sfst_AL4 costs 0 real_cost = -259.498 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -298.812 UNI-EID_sfst_AL3 costs 0 real_cost = -168.835 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -302.782 UNI-EID_sfst_AL2 costs 0 real_cost = -184.562 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -376.395 UNI-EID_sfst_AL1 costs 0 real_cost = -258.073 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -233.877 UNI-EID_expm_TS1 costs 0 real_cost = -233.931 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -258.54 UNI-EID_bnmx_TS5 costs 0 real_cost = -138.562 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -374.598 UNI-EID_bnmx_TS4 costs 0 real_cost = -266.514 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -298.812 UNI-EID_bnmx_TS3 costs 0 real_cost = -168.835 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -302.782 UNI-EID_bnmx_TS2 costs 0 real_cost = -184.562 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -376.395 UNI-EID_bnmx_TS1 costs 0 real_cost = -258.073 SPARKS2_TS5-scwrl costs 0 real_cost = -367.15 SPARKS2_TS5 costs 0 real_cost = -380.469 SPARKS2_TS4-scwrl costs 0 real_cost = -155.65 SPARKS2_TS4 costs 0 real_cost = -158.728 SPARKS2_TS3-scwrl costs 0 real_cost = -108 SPARKS2_TS3 costs 0 real_cost = -111.892 SPARKS2_TS2-scwrl costs 0 real_cost = -133.776 SPARKS2_TS2 costs 0 real_cost = -143.672 SPARKS2_TS1-scwrl costs 0 real_cost = -256.683 SPARKS2_TS1 costs 0 real_cost = -255.592 SP4_TS5-scwrl costs 0 real_cost = -159.598 SP4_TS5 costs 0 real_cost = -156.024 SP4_TS4-scwrl costs 0 real_cost = -99.0117 SP4_TS4 costs 0 real_cost = -104.439 SP4_TS3-scwrl costs 0 real_cost = -365.455 SP4_TS3 costs 0 real_cost = -373.182 SP4_TS2-scwrl costs 0 real_cost = -133.776 SP4_TS2 costs 0 real_cost = -143.672 SP4_TS1-scwrl costs 0 real_cost = -267.099 SP4_TS1 costs 0 real_cost = -263.02 SP3_TS5-scwrl costs 0 real_cost = -365.455 SP3_TS5 costs 0 real_cost = -373.182 SP3_TS4-scwrl costs 0 real_cost = -155.65 SP3_TS4 costs 0 real_cost = -158.728 SP3_TS3-scwrl costs 0 real_cost = -108.893 SP3_TS3 costs 0 real_cost = -116.309 SP3_TS2-scwrl costs 0 real_cost = -133.776 SP3_TS2 costs 0 real_cost = -143.672 SP3_TS1-scwrl costs 0 real_cost = -267.099 SP3_TS1 costs 0 real_cost = -263.02 SAM_T06_server_TS5-scwrl costs 0 real_cost = -278.193 SAM_T06_server_TS5 costs 0 real_cost = -289.731 SAM_T06_server_TS4-scwrl costs 0 real_cost = -220.588 SAM_T06_server_TS4 costs 0 real_cost = -240.217 SAM_T06_server_TS3-scwrl costs 0 real_cost = -267.48 SAM_T06_server_TS3 costs 0 real_cost = -315.348 SAM_T06_server_TS2-scwrl costs 0 real_cost = -176.042 SAM_T06_server_TS2 costs 0 real_cost = -237.049 SAM_T06_server_TS1-scwrl costs 0 real_cost = -379.755 SAM_T06_server_TS1 costs 0 real_cost = -374.832 SAM-T99_AL5-scwrl costs 0 real_cost = -251.132 SAM-T99_AL5 costs 0 real_cost = -140.812 SAM-T99_AL4-scwrl costs 0 real_cost = -267.094 SAM-T99_AL4 costs 0 real_cost = -149.651 SAM-T99_AL3-scwrl costs 0 real_cost = -304.927 SAM-T99_AL3 costs 0 real_cost = -192.372 SAM-T99_AL2-scwrl costs 0 real_cost = -361.88 SAM-T99_AL2 costs 0 real_cost = -245.298 SAM-T99_AL1-scwrl costs 0 real_cost = -379.186 SAM-T99_AL1 costs 0 real_cost = -261.169 SAM-T02_AL5-scwrl costs 0 real_cost = -371.598 SAM-T02_AL5 costs 0 real_cost = -264.914 SAM-T02_AL4-scwrl costs 0 real_cost = -305.277 SAM-T02_AL4 costs 0 real_cost = -186.062 SAM-T02_AL3-scwrl costs 0 real_cost = -262.225 SAM-T02_AL3 costs 0 real_cost = -131.906 SAM-T02_AL2-scwrl costs 0 real_cost = -279.729 SAM-T02_AL2 costs 0 real_cost = -146.661 SAM-T02_AL1-scwrl costs 0 real_cost = -287.474 SAM-T02_AL1 costs 0 real_cost = -152.508 ROKKY_TS5-scwrl costs 0 real_cost = -185.487 ROKKY_TS5 costs 0 real_cost = -187.537 ROKKY_TS4-scwrl costs 0 real_cost = -194.223 ROKKY_TS4 costs 0 real_cost = -200.294 ROKKY_TS3-scwrl costs 0 real_cost = -178.587 ROKKY_TS3 costs 0 real_cost = -181.002 ROKKY_TS2-scwrl costs 0 real_cost = -182.306 ROKKY_TS2 costs 0 real_cost = -192.456 ROKKY_TS1-scwrl costs 0 real_cost = -188.663 ROKKY_TS1 costs 0 real_cost = -187.78 ROBETTA_TS5-scwrl costs 0 real_cost = -283.839 ROBETTA_TS5 costs 0 real_cost = -287.049 ROBETTA_TS4-scwrl costs 0 real_cost = -387.675 ROBETTA_TS4 costs 0 real_cost = -393.741 ROBETTA_TS3-scwrl costs 0 real_cost = -251.453 ROBETTA_TS3 costs 0 real_cost = -253.795 ROBETTA_TS2-scwrl costs 0 real_cost = -392.636 ROBETTA_TS2 costs 0 real_cost = -398.065 ROBETTA_TS1-scwrl costs 0 real_cost = -387.675 ROBETTA_TS1 costs 0 real_cost = -391.975 RAPTOR_TS5-scwrl costs 0 real_cost = -208.922 RAPTOR_TS5 costs 0 real_cost = -220.897 RAPTOR_TS4-scwrl costs 0 real_cost = -210.969 RAPTOR_TS4 costs 0 real_cost = -200.232 RAPTOR_TS3-scwrl costs 0 real_cost = -203.713 RAPTOR_TS3 costs 0 real_cost = -201.842 RAPTOR_TS2-scwrl costs 0 real_cost = -360.227 RAPTOR_TS2 costs 0 real_cost = -365.908 RAPTOR_TS1-scwrl costs 0 real_cost = -368.85 RAPTOR_TS1 costs 0 real_cost = -377.496 RAPTORESS_TS5-scwrl costs 0 real_cost = -178.62 RAPTORESS_TS5 costs 0 real_cost = -185.374 RAPTORESS_TS4-scwrl costs 0 real_cost = -307.398 RAPTORESS_TS4 costs 0 real_cost = -306.993 RAPTORESS_TS3-scwrl costs 0 real_cost = -70.667 RAPTORESS_TS3 costs 0 real_cost = -65.2302 RAPTORESS_TS2-scwrl costs 0 real_cost = -349.074 RAPTORESS_TS2 costs 0 real_cost = -346.675 RAPTORESS_TS1-scwrl costs 0 real_cost = -368.85 RAPTORESS_TS1 costs 0 real_cost = -377.496 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -357.044 RAPTOR-ACE_TS5 costs 0 real_cost = -364.8 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -267.099 RAPTOR-ACE_TS4 costs 0 real_cost = -263.02 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -196.551 RAPTOR-ACE_TS3 costs 0 real_cost = -199.701 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -365.455 RAPTOR-ACE_TS2 costs 0 real_cost = -373.182 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -195.576 RAPTOR-ACE_TS1 costs 0 real_cost = -190.839 Pmodeller6_TS5-scwrl costs 0 real_cost = -287.368 Pmodeller6_TS5 costs 0 real_cost = -288.968 Pmodeller6_TS4-scwrl costs 0 real_cost = -287.368 Pmodeller6_TS4 costs 0 real_cost = -288.968 Pmodeller6_TS3-scwrl costs 0 real_cost = -287.368 Pmodeller6_TS3 costs 0 real_cost = -288.968 Pmodeller6_TS2-scwrl costs 0 real_cost = -287.368 Pmodeller6_TS2 costs 0 real_cost = -288.968 Pmodeller6_TS1-scwrl costs 0 real_cost = -287.368 Pmodeller6_TS1 costs 0 real_cost = -288.968 Phyre-2_TS5-scwrl costs 0 real_cost = -384.675 Phyre-2_TS5 costs 0 real_cost = -381.071 Phyre-2_TS4-scwrl costs 0 real_cost = -384.675 Phyre-2_TS4 costs 0 real_cost = -381.071 Phyre-2_TS3-scwrl costs 0 real_cost = -384.675 Phyre-2_TS3 costs 0 real_cost = -381.071 Phyre-2_TS2-scwrl costs 0 real_cost = -384.675 Phyre-2_TS2 costs 0 real_cost = -381.071 Phyre-2_TS1-scwrl costs 0 real_cost = -384.675 Phyre-2_TS1 costs 0 real_cost = -381.071 Phyre-1_TS1-scwrl costs 0 real_cost = -384.675 Phyre-1_TS1 costs 0 real_cost = -384.79 Pcons6_TS5-scwrl costs 0 real_cost = -370.052 Pcons6_TS5 costs 0 real_cost = -370.052 Pcons6_TS4-scwrl costs 0 real_cost = -363.625 Pcons6_TS4 costs 0 real_cost = -363.551 Pcons6_TS3-scwrl costs 0 real_cost = -363.625 Pcons6_TS3 costs 0 real_cost = -363.551 Pcons6_TS2-scwrl costs 0 real_cost = -363.625 Pcons6_TS2 costs 0 real_cost = -363.551 Pcons6_TS1-scwrl costs 0 real_cost = -363.625 Pcons6_TS1 costs 0 real_cost = -363.551 PROTINFO_TS5-scwrl costs 0 real_cost = -329.988 PROTINFO_TS5 costs 0 real_cost = -328.925 PROTINFO_TS4-scwrl costs 0 real_cost = -323.335 PROTINFO_TS4 costs 0 real_cost = -326.563 PROTINFO_TS3-scwrl costs 0 real_cost = -312.282 PROTINFO_TS3 costs 0 real_cost = -312.282 PROTINFO_TS2-scwrl costs 0 real_cost = -311.943 PROTINFO_TS2 costs 0 real_cost = -311.943 PROTINFO_TS1-scwrl costs 0 real_cost = -340.448 PROTINFO_TS1 costs 0 real_cost = -340.448 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -285.436 PROTINFO-AB_TS5 costs 0 real_cost = -293.379 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -311.001 PROTINFO-AB_TS4 costs 0 real_cost = -325.067 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -324.806 PROTINFO-AB_TS3 costs 0 real_cost = -335.039 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -348.786 PROTINFO-AB_TS2 costs 0 real_cost = -355.008 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -353.005 PROTINFO-AB_TS1 costs 0 real_cost = -365.152 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -171.016 NN_PUT_lab_TS1 costs 0 real_cost = -181.272 MetaTasser_TS2-scwrl costs 0 real_cost = -9.6238 MetaTasser_TS2 costs 0 real_cost = -22.0592 MetaTasser_TS1-scwrl costs 0 real_cost = -191.541 MetaTasser_TS1 costs 0 real_cost = -184.647 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 337.954 Ma-OPUS-server_TS5 costs 0 real_cost = 340.545 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 332.115 Ma-OPUS-server_TS4 costs 0 real_cost = 331.817 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -193.715 Ma-OPUS-server_TS3 costs 0 real_cost = -201.044 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -107.08 Ma-OPUS-server_TS2 costs 0 real_cost = -109.292 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -366.345 Ma-OPUS-server_TS1 costs 0 real_cost = -367.851 MIG_FROST_AL1-scwrl costs 0 real_cost = 198.926 MIG_FROST_AL1 costs 0 real_cost = 292.12 LOOPP_TS5-scwrl costs 0 real_cost = -247.417 LOOPP_TS5 costs 0 real_cost = -243.577 LOOPP_TS4-scwrl costs 0 real_cost = -288.988 LOOPP_TS4 costs 0 real_cost = -281.237 LOOPP_TS3-scwrl costs 0 real_cost = -321.11 LOOPP_TS3 costs 0 real_cost = -304.427 LOOPP_TS2-scwrl costs 0 real_cost = -339.944 LOOPP_TS2 costs 0 real_cost = -331.635 LOOPP_TS1-scwrl costs 0 real_cost = -318.62 LOOPP_TS1 costs 0 real_cost = -299.466 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -271.989 Huber-Torda-Server_TS5 costs 0 real_cost = -185.565 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -364.88 Huber-Torda-Server_TS4 costs 0 real_cost = -276.406 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -315.594 Huber-Torda-Server_TS3 costs 0 real_cost = -221.988 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -294.45 Huber-Torda-Server_TS2 costs 0 real_cost = -214.886 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -384.675 Huber-Torda-Server_TS1 costs 0 real_cost = -294.368 HHpred3_TS1-scwrl costs 0 real_cost = -331.51 HHpred3_TS1 costs 0 real_cost = -340.162 HHpred2_TS1-scwrl costs 0 real_cost = -331.51 HHpred2_TS1 costs 0 real_cost = -340.162 HHpred1_TS1-scwrl costs 0 real_cost = -367.584 HHpred1_TS1 costs 0 real_cost = -370.571 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -370.649 GeneSilicoMetaServer_TS5 costs 0 real_cost = -378.963 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -365.051 GeneSilicoMetaServer_TS4 costs 0 real_cost = -375.117 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -191.444 GeneSilicoMetaServer_TS3 costs 0 real_cost = -199.55 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -220.361 GeneSilicoMetaServer_TS2 costs 0 real_cost = -223.334 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -362.047 GeneSilicoMetaServer_TS1 costs 0 real_cost = -365.439 Frankenstein_TS4-scwrl costs 0 real_cost = -168.265 Frankenstein_TS4 costs 0 real_cost = -169.025 Frankenstein_TS3-scwrl costs 0 real_cost = -226.85 Frankenstein_TS3 costs 0 real_cost = -230.81 Frankenstein_TS2-scwrl costs 0 real_cost = -242.079 Frankenstein_TS2 costs 0 real_cost = -243.031 Frankenstein_TS1-scwrl costs 0 real_cost = -168.265 Frankenstein_TS1 costs 0 real_cost = -169.025 FUNCTION_TS5-scwrl costs 0 real_cost = -286.813 FUNCTION_TS5 costs 0 real_cost = -306.5 FUNCTION_TS4-scwrl costs 0 real_cost = -223.313 FUNCTION_TS4 costs 0 real_cost = -217.751 FUNCTION_TS3-scwrl costs 0 real_cost = -222.763 FUNCTION_TS3 costs 0 real_cost = -222.008 FUNCTION_TS2-scwrl costs 0 real_cost = -193.429 FUNCTION_TS2 costs 0 real_cost = -176.749 FUNCTION_TS1-scwrl costs 0 real_cost = -192.903 FUNCTION_TS1 costs 0 real_cost = -178.805 FUGUE_AL5-scwrl costs 0 real_cost = 344.842 FUGUE_AL5 costs 0 real_cost = 460.577 FUGUE_AL4-scwrl costs 0 real_cost = 441.447 FUGUE_AL4 costs 0 real_cost = 505.185 FUGUE_AL3-scwrl costs 0 real_cost = 539.33 FUGUE_AL3 costs 0 real_cost = 568.805 FUGUE_AL2-scwrl costs 0 real_cost = -367.313 FUGUE_AL2 costs 0 real_cost = -252.5 FUGUE_AL1-scwrl costs 0 real_cost = -376.361 FUGUE_AL1 costs 0 real_cost = -265.454 FUGMOD_TS5-scwrl costs 0 real_cost = 322.94 FUGMOD_TS5 costs 0 real_cost = 322.549 FUGMOD_TS4-scwrl costs 0 real_cost = 415.38 FUGMOD_TS4 costs 0 real_cost = 412.262 FUGMOD_TS3-scwrl costs 0 real_cost = 531.911 FUGMOD_TS3 costs 0 real_cost = 507.535 FUGMOD_TS2-scwrl costs 0 real_cost = -375.306 FUGMOD_TS2 costs 0 real_cost = -380.123 FUGMOD_TS1-scwrl costs 0 real_cost = -361.955 FUGMOD_TS1 costs 0 real_cost = -369.599 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 342.334 FPSOLVER-SERVER_TS1 costs 0 real_cost = 341.261 FORTE2_AL5-scwrl costs 0 real_cost = 363.441 FORTE2_AL5 costs 0 real_cost = 488.276 FORTE2_AL4-scwrl costs 0 real_cost = 348.571 FORTE2_AL4 costs 0 real_cost = 450.343 FORTE2_AL3-scwrl costs 0 real_cost = 422.685 FORTE2_AL3 costs 0 real_cost = 515.632 FORTE2_AL2-scwrl costs 0 real_cost = -64.5983 FORTE2_AL2 costs 0 real_cost = 23.6376 FORTE2_AL1-scwrl costs 0 real_cost = -275.568 FORTE2_AL1 costs 0 real_cost = -151.617 FORTE1_AL5-scwrl costs 0 real_cost = 364.261 FORTE1_AL5 costs 0 real_cost = 491.112 FORTE1_AL4-scwrl costs 0 real_cost = 337.977 FORTE1_AL4 costs 0 real_cost = 453.667 FORTE1_AL3-scwrl costs 0 real_cost = 420.865 FORTE1_AL3 costs 0 real_cost = 511.45 FORTE1_AL2-scwrl costs 0 real_cost = -63.8417 FORTE1_AL2 costs 0 real_cost = 27.0091 FORTE1_AL1-scwrl costs 0 real_cost = -275.568 FORTE1_AL1 costs 0 real_cost = -151.617 FOLDpro_TS5-scwrl costs 0 real_cost = -109.531 FOLDpro_TS5 costs 0 real_cost = -105.65 FOLDpro_TS4-scwrl costs 0 real_cost = -106.6 FOLDpro_TS4 costs 0 real_cost = -115.207 FOLDpro_TS3-scwrl costs 0 real_cost = -35.4368 FOLDpro_TS3 costs 0 real_cost = -34.997 FOLDpro_TS2-scwrl costs 0 real_cost = -248.823 FOLDpro_TS2 costs 0 real_cost = -258.467 FOLDpro_TS1-scwrl costs 0 real_cost = -322.916 FOLDpro_TS1 costs 0 real_cost = -334.482 FAMS_TS5-scwrl costs 0 real_cost = -286.813 FAMS_TS5 costs 0 real_cost = -306.5 FAMS_TS4-scwrl costs 0 real_cost = -328.532 FAMS_TS4 costs 0 real_cost = -347.675 FAMS_TS3-scwrl costs 0 real_cost = -325.884 FAMS_TS3 costs 0 real_cost = -346.083 FAMS_TS2-scwrl costs 0 real_cost = -355.587 FAMS_TS2 costs 0 real_cost = -364.629 FAMS_TS1-scwrl costs 0 real_cost = -259.92 FAMS_TS1 costs 0 real_cost = -275.319 FAMSD_TS5-scwrl costs 0 real_cost = -349.855 FAMSD_TS5 costs 0 real_cost = -362.662 FAMSD_TS4-scwrl costs 0 real_cost = -355.587 FAMSD_TS4 costs 0 real_cost = -364.629 FAMSD_TS3-scwrl costs 0 real_cost = -336.728 FAMSD_TS3 costs 0 real_cost = -348.847 FAMSD_TS2-scwrl costs 0 real_cost = -285.872 FAMSD_TS2 costs 0 real_cost = -297.612 FAMSD_TS1-scwrl costs 0 real_cost = -339.205 FAMSD_TS1 costs 0 real_cost = -351.752 Distill_TS5-scwrl costs 0 real_cost = 218.081 Distill_TS4-scwrl costs 0 real_cost = 209.059 Distill_TS3-scwrl costs 0 real_cost = 213.485 Distill_TS2-scwrl costs 0 real_cost = 205.519 Distill_TS1-scwrl costs 0 real_cost = 206.713 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -209.456 CaspIta-FOX_TS5 costs 0 real_cost = -224.486 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -299.199 CaspIta-FOX_TS4 costs 0 real_cost = -308.667 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -315.821 CaspIta-FOX_TS3 costs 0 real_cost = -328.224 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -291.792 CaspIta-FOX_TS2 costs 0 real_cost = -306.124 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -380.786 CaspIta-FOX_TS1 costs 0 real_cost = -397.813 CIRCLE_TS5-scwrl costs 0 real_cost = -256.158 CIRCLE_TS5 costs 0 real_cost = -276.696 CIRCLE_TS4-scwrl costs 0 real_cost = -325.884 CIRCLE_TS4 costs 0 real_cost = -346.083 CIRCLE_TS3-scwrl costs 0 real_cost = -334.106 CIRCLE_TS3 costs 0 real_cost = -353.464 CIRCLE_TS2-scwrl costs 0 real_cost = -330.912 CIRCLE_TS2 costs 0 real_cost = -349.77 CIRCLE_TS1-scwrl costs 0 real_cost = -328.532 CIRCLE_TS1 costs 0 real_cost = -347.675 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -280.49 Bilab-ENABLE_TS5 costs 0 real_cost = -280.49 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -284.263 Bilab-ENABLE_TS4 costs 0 real_cost = -284.263 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -280.729 Bilab-ENABLE_TS3 costs 0 real_cost = -280.729 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -358.155 Bilab-ENABLE_TS2 costs 0 real_cost = -358.155 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -366.09 Bilab-ENABLE_TS1 costs 0 real_cost = -366.09 BayesHH_TS1-scwrl costs 0 real_cost = -340.186 BayesHH_TS1 costs 0 real_cost = -352.105 ABIpro_TS5-scwrl costs 0 real_cost = 285.765 ABIpro_TS5 costs 0 real_cost = 285.394 ABIpro_TS4-scwrl costs 0 real_cost = 288.053 ABIpro_TS4 costs 0 real_cost = 288.053 ABIpro_TS3-scwrl costs 0 real_cost = 250.637 ABIpro_TS3 costs 0 real_cost = 250.632 ABIpro_TS2-scwrl costs 0 real_cost = 279.25 ABIpro_TS2 costs 0 real_cost = 277.749 ABIpro_TS1-scwrl costs 0 real_cost = 251.634 ABIpro_TS1 costs 0 real_cost = 251.144 3Dpro_TS5-scwrl costs 0 real_cost = -86.1568 3Dpro_TS5 costs 0 real_cost = -90.6777 3Dpro_TS4-scwrl costs 0 real_cost = -202.99 3Dpro_TS4 costs 0 real_cost = -209.903 3Dpro_TS3-scwrl costs 0 real_cost = -27.6508 3Dpro_TS3 costs 0 real_cost = -37.1095 3Dpro_TS2-scwrl costs 0 real_cost = -387.762 3Dpro_TS2 costs 0 real_cost = -407.505 3Dpro_TS1-scwrl costs 0 real_cost = -320.316 3Dpro_TS1 costs 0 real_cost = -328.926 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -195.593 3D-JIGSAW_TS5 costs 0 real_cost = -186.43 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -191.718 3D-JIGSAW_TS4 costs 0 real_cost = -186.058 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -194.43 3D-JIGSAW_TS3 costs 0 real_cost = -177.802 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -336.124 3D-JIGSAW_TS2 costs 0 real_cost = -325.532 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -342.055 3D-JIGSAW_TS1 costs 0 real_cost = -337.344 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -327.594 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -330.393 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -340.701 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -335.621 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -332.025 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -335.22 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -335.023 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -334.248 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -330.853 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -333.153 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -331.785 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -333.585 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -314.632 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -316.432 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -331.296 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -333.096 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -328.791 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -330.591 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -332.186 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -333.986 T0290.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -368.669 T0290.try3-opt2.pdb.gz costs 0 real_cost = -362.568 T0290.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -364.666 T0290.try3-opt1.pdb.gz costs 0 real_cost = -361.353 T0290.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -355.613 T0290.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -361.359 T0290.try2-opt2.pdb.gz costs 0 real_cost = -359.556 T0290.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -362.613 T0290.try2-opt1.pdb.gz costs 0 real_cost = -363.885 T0290.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -352.317 T0290.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -372.988 T0290.try1-opt2.pdb.gz costs 0 real_cost = -367.862 T0290.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -371.309 T0290.try1-opt1.pdb.gz costs 0 real_cost = -368.798 T0290.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -375.056 ../model5.ts-submitted costs 0 real_cost = -272.04 ../model4.ts-submitted costs 0 real_cost = -315.47 ../model3.ts-submitted costs 0 real_cost = -237.043 ../model2.ts-submitted costs 0 real_cost = -368.92 ../model1.ts-submitted costs 0 real_cost = -362.562 align5 costs 0 real_cost = -217.887 align4 costs 0 real_cost = -240.661 align3 costs 0 real_cost = -272.03 align2 costs 0 real_cost = -328.402 align1 costs 0 real_cost = -246.835 T0290.try1-opt2.pdb costs 0 real_cost = -367.875 model5-scwrl costs 0 real_cost = -275.06 model5.ts-submitted costs 0 real_cost = -272.04 model4-scwrl costs 0 real_cost = -267.527 model4.ts-submitted costs 0 real_cost = -315.47 model3-scwrl costs 0 real_cost = -176.042 model3.ts-submitted costs 0 real_cost = -237.043 model2-scwrl costs 0 real_cost = -357.457 model2.ts-submitted costs 0 real_cost = -368.92 model1-scwrl costs 0 real_cost = -357.341 model1.ts-submitted costs 0 real_cost = -362.562 T0290_1.real.pdb costs 0 real_cost = -885.4 # command:CPU_time= 829.52 sec, elapsed time= 1254.26 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty