# List of top-scoring protein chains for T0290.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1cynA	178	7.02e-30	2cpl	b.62.1.1	27489
2bitX	165	1.04e-29			
1dywA	173	1.06e-29	2cpl	b.62.1.1	27505
1awqA	164	1.50e-29	2cpl	b.62.1.1	27461
1yndA	165	1.50e-29			
1qngA	170	1.65e-29	2cpl	b.62.1.1	27507
1ihgA	370	1.70e-29	2cpl	a.118.8.1,b.62.1.1	62380,62381
1m9eA	164	1.85e-29		b.62.1.1	84894
2alfA	164	2.44e-29			
1qnhA	170	3.58e-29	2cpl	b.62.1.1	27508
2rmcA	182	5.12e-29	2cpl	b.62.1.1	27491
1qoiA	177	5.55e-29	2cpl	b.62.1.1	27490
1a58	177	5.77e-29	2cpl	b.62.1.1	27495
1zmfA	165	8.19e-29			
1zcxA	178	8.22e-29			
1xo7A	166	1.03e-28			
2eslA	190	1.04e-28			
1vdnA	162	1.25e-28			
1h0pA	182	1.75e-28		b.62.1.1	76450
2cfeA	162	2.15e-28			
2a2nA	176	3.46e-27			
1xyhA	161	5.93e-27			
1zkcA	197	7.67e-27			
1xwnA	174	9.26e-27			
1z81A	229	5.32e-26			
2fu0A	160	9.49e-26			
2c3bA	172	4.19e-25			
2b71A	196	4.54e-25			
1w74A	191	8.35e-25			
2nul	164	3.81e-23	2cpl	b.62.1.1	27511
1lopA	164	8.55e-23	2cpl	b.62.1.1	27510
1clh	166	1.62e-22	2cpl	b.62.1.1	27512
1v9tA	166	1.63e-22		b.62.1.1	108451
1wq5A	268	2.66e+00			
2sil	381	4.91e+00	3sil	b.68.1.1	27543
3sil	379	5.13e+00	3sil	b.68.1.1	27542
1p6qA	129	6.09e+00		c.23.1.1	104074
1mxiA	160	6.51e+00		c.116.1.1	79646
2gfhA	260	9.87e+00			
1xc4A	268	1.61e+01			
2fug5	207	1.70e+01			
1dgnA	89	1.76e+01	1dgnA	a.77.1.3	18436
2fz5A	137	1.92e+01			
1r3nA	462	2.00e+01		c.56.5.4,d.58.19.1	96945,96946
1r43A	463	2.00e+01		c.56.5.4,d.58.19.1	96969,96970
2gkwA	192	2.39e+01			
1u6lA	149	2.41e+01			
1rf3A	200	2.44e+01		b.8.1.1,h.1.2.1	104915,104916
1flkA	228	2.55e+01	1d0aB	b.8.1.1,h.1.2.1	23262,45469
2gk3A	256	2.84e+01			
2b4wA	315	3.51e+01			
1xdtR	79	3.63e+01	1xdtR	g.3.11.1	44296
1icpA	376	4.08e+01	1oyc	c.1.4.1	62270
1zx8A	136	4.12e+01			
1ufbA	127	4.15e+01		a.24.16.3	99331
1y42X	392	4.22e+01			
1x94A	191	4.24e+01		c.80.1.3	109522
1xcfA	268	4.52e+01			
7ahlA	293	4.60e+01	7ahlA	f.6.1.1	43812
1ojxA	263	4.65e+01		c.1.10.1	93164
1y7eA	458	4.68e+01			
1w8rA	263	4.83e+01			
1tj2A	584	4.87e+01			
1tiwA	602	4.92e+01			
1fj2A	232	5.21e+01	1auoA	c.69.1.14	34720
1ldr	43	5.22e+01	1ajj	g.12.1.1	44616
1w8sA	263	5.22e+01			
1x63A	82	5.23e+01			
1fhwA	129	5.41e+01	1faoA	b.55.1.1	26977
1k87A	669	5.84e+01		a.176.1.1,c.1.23.2	77286,77287
1fgyA	127	6.00e+01	1faoA	b.55.1.1	26976
2az3A	164	6.03e+01			
1flcA	432	6.16e+01	1flcA	b.19.1.3,c.23.10.2	23837,31337
2az1A	181	6.47e+01			
1vkdA	338	6.56e+01		b.67.2.4	108644
1vctA	205	6.72e+01			
1ichA	112	7.00e+01		a.77.1.2	71182
1wn0A	145	7.09e+01			
1b77A	228	7.35e+01	1b77A	d.131.1.2,d.131.1.2	41362,41363
1v54H	85	7.39e+01		a.51.1.1	100329
1sr3A	136	7.39e+01		b.40.9.1	98976
2c4nA	250	7.39e+01			
1tcwA	99	7.42e+01	1fmb	b.50.1.1	26760
2cupA	101	7.52e+01			
2abbA	364	7.52e+01			
1z4vA	532	7.61e+01			
2madH	373	7.66e+01	2bbkH	b.69.2.1	27639
1vysX	364	7.66e+01		c.1.4.1	108907
1vypX	364	7.69e+01		c.1.4.1	108905
1uocA	289	7.78e+01		c.55.3.9	99686
2a9vA	212	7.80e+01			
1yoxA	250	7.88e+01			
1vyrA	364	7.90e+01		c.1.4.1	108906
1kfbA	268	8.08e+01		c.1.2.4	77369
1beuA	268	8.14e+01	2tysA	c.1.2.4	28574
1jjiA	311	8.17e+01		c.69.1.2	66766
1wikA	109	8.21e+01			
1tjpA	268	8.29e+01			
1z1jA	306	8.38e+01			
2axtB	510	8.48e+01			
2a5iA	306	8.51e+01			
2a5kA	307	8.52e+01			
2amdA	311	8.58e+01			
1q2wA	308	8.60e+01		b.47.1.4	88355
1qwxA	109	8.61e+01		b.61.2.2	96507