# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dywA 173 4.02e-34 2cpl b.62.1.1 27505 2bitX 165 9.02e-34 1yndA 165 1.11e-33 2cpl 165 1.36e-33 2cpl b.62.1.1 27420 1a58 177 2.08e-33 2cpl b.62.1.1 27495 1cwoA 165 2.15e-33 2cpl b.62.1.1 27445 1awqA 164 2.55e-33 2cpl b.62.1.1 27461 1awsA 164 2.78e-33 2cpl b.62.1.1 27431 1ihgA 370 4.67e-33 2cpl a.118.8.1,b.62.1.1 62380,62381 2rmcA 182 5.35e-33 2cpl b.62.1.1 27491 1zcxA 178 7.62e-33 2cfeA 162 1.27e-32 1qoiA 177 1.65e-32 2cpl b.62.1.1 27490 1xo7A 166 2.82e-32 1vdnA 162 2.89e-32 1h0pA 182 5.14e-32 b.62.1.1 76450 2a2nA 176 5.41e-30 1zkcA 197 7.36e-30 1xwnA 174 1.39e-29 2fu0A 160 2.55e-29 2b71A 196 1.29e-28 1v9tA 166 1.68e-24 b.62.1.1 108451 1lopA 164 1.89e-24 2cpl b.62.1.1 27510 1clh 166 1.53e-23 2cpl b.62.1.1 27512 1j2aA 166 5.55e-22 b.62.1.1 90779 1mxiA 160 2.65e-01 c.116.1.1 79646 2gk3A 256 3.56e+00 1nb8A 353 4.97e+00 d.3.1.9 80385 1oaoC 729 5.30e+00 e.26.1.3 86746 1wggA 96 6.07e+00 1mjgM 729 7.02e+00 e.26.1.3 79204 1q0eA 152 7.10e+00 b.1.8.1 95504 1e9pA 151 7.54e+00 1mfmA b.1.8.1 22215 1rx0A 393 9.22e+00 a.29.3.1,e.6.1.1 98007,98008 1wloA 136 1.01e+01 1bvh 157 1.11e+01 1dg9A c.44.1.1 32640 1bf8 205 1.12e+01 1qpxA b.1.11.1,b.7.2.1 22332,23214 1oa4A 222 1.22e+01 b.29.1.11 86731 1cbjA 151 1.25e+01 1mfmA b.1.8.1 22213 1qupA 222 1.25e+01 1qupA b.1.8.1,d.58.17.1 22301,39352 1nbfA 353 1.28e+01 d.3.1.9 80387 1vr0A 247 1.49e+01 1lq9A 112 1.49e+01 d.58.4.3 78129 1fnhA 271 1.59e+01 1fnhA b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1vj0A 380 1.64e+01 b.35.1.2,c.2.1.1 100786,100787 2bm3A 166 1.80e+01 1pil 112 1.81e+01 2pii d.58.5.1 39072 1b77A 228 2.04e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1jt7A 146 2.06e+01 b.42.1.1 67255 1pbyA 489 2.23e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1a49A 530 2.24e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1v3rA 116 2.28e+01 1wdnA 226 2.37e+01 1lst c.94.1.1 35816 2pii 112 2.48e+01 2pii d.58.5.1 39071 1c0eA 157 2.55e+01 1dg9A c.44.1.1 32638 2sodB 152 2.72e+01 1mfmA b.1.8.1 22242 1jjuA 489 2.77e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66774,66775,66776,66777,66778 1qmpA 130 2.84e+01 1dz3A c.23.1.1 31106 2b59A 187 2.86e+01 1zoxA 113 2.94e+01 1vfjA 116 2.98e+01 1ezwA 349 3.03e+01 1ezwA c.1.16.3 29558 1ewnA 219 3.31e+01 1bnkA b.46.1.2 25762 1a4rA 191 3.35e+01 1ctqA c.37.1.8 32063 1vqvA 306 3.39e+01 2bdvA 231 3.40e+01 1r4wA 226 3.44e+01 c.47.1.13 97050 1zx8A 136 3.53e+01 2b8mA 117 3.57e+01 1barA 140 3.68e+01 1bfg b.42.1.1 25504 2aexA 346 3.71e+01 1gggB 226 3.82e+01 1lst c.94.1.1 35818 1q5fA 156 3.83e+01 d.24.1.1 104536 1gggA 226 3.86e+01 1lst c.94.1.1 35817 7fd1A 106 3.87e+01 1a6l d.58.1.2 38953 1kv9A 668 3.91e+01 a.3.1.6,b.70.1.1 73056,73057 1wriA 93 3.97e+01 1k1xA 659 3.98e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1afcA 140 4.00e+01 1bfg b.42.1.1 25506 1fdd 106 4.10e+01 1a6l d.58.1.2 38960 1std 172 4.25e+01 3stdA d.17.4.1 38089 1ciy 590 4.50e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1df9A 191 4.54e+01 1befA b.47.1.3 26420 1xipA 388 4.56e+01 1mdbA 539 4.63e+01 e.23.1.1 79008 3stdA 165 4.70e+01 3stdA d.17.4.1 38073 2std 172 4.75e+01 3stdA d.17.4.1 38085 1ffk1 177 4.81e+01 1ffk1 1idpA 172 4.83e+01 d.17.4.1 83685 1prn 289 4.89e+01 3prn f.4.3.1 43762 1qwgA 251 4.90e+01 c.1.27.1 96473 1to4A 156 4.93e+01 b.1.8.1 107162 1dz3A 130 4.97e+01 1dz3A c.23.1.1 31105 1s2oA 244 4.98e+01 1rzhH 260 5.04e+01 b.41.1.1,f.23.10.1 98162,98163 1p63A 144 5.05e+01 b.42.1.1 94153 1vpjA 192 5.43e+01 3prn 289 5.46e+01 3prn f.4.3.1 43761 2kaiA 80 5.69e+01 2pkaA b.47.1.2 26306 1lf7A 182 5.77e+01 b.60.1.1 73878 1iw2A 182 5.77e+01 b.60.1.1 71468 1q7zA 566 5.77e+01 c.1.21.2,c.1.26.1 96090,96091 1zk5A 176 5.85e+01 1t5rA 284 5.97e+01 f.6.1.1 106465 2arzA 247 6.03e+01 1bftA 101 6.09e+01 1a3qA b.1.18.1 21934 1jqzA 146 6.13e+01 b.42.1.1 67109 1o7iA 119 6.19e+01 b.40.4.3 86642 1yzxA 226 6.64e+01 1aje 194 6.81e+01 1ctqA c.37.1.8 32071 2pkaA 80 6.88e+01 2pkaA b.47.1.2 26302 1rg8A 146 6.88e+01 1f6oA 219 6.95e+01 1bnkA b.46.1.2 25763 1befA 181 6.99e+01 1befA b.47.1.3 26419 2afgA 140 7.02e+01 1bfg b.42.1.1 25514 1xebA 150 7.05e+01 1wgkA 114 7.06e+01 1usuB 170 7.15e+01 d.83.2.1 99886 1a70 97 7.15e+01 1awd d.15.4.1 37678 1tg7A 971 7.17e+01 1sq2N 113 7.24e+01 b.1.1.1 105881 2sil 381 7.25e+01 3sil b.68.1.1 27543 1sglA 209 7.30e+01 d.124.1.1 105536 1kwhA 492 7.33e+01 c.94.1.1 68876 1kb0A 677 7.44e+01 a.3.1.6,b.70.1.1 68378,68379 1bh3 289 7.52e+01 3prn f.4.3.1 43766 1u34A 119 7.53e+01 g.76.1.1 107634 1k2fA 190 7.57e+01 b.8.1.2 68054 1xm0A 147 7.65e+01 1b1cA 181 7.66e+01 1amoA c.23.5.2 31212 1a5dA 173 7.69e+01 1amm b.11.1.1,b.11.1.1 23614,23615 1eysH 259 7.74e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1us5A 314 7.75e+01 c.94.1.1 99856 1yo1A 260 7.76e+01 1fvuB 125 7.83e+01 1ixxB d.169.1.1 42346 1ntyA 311 7.87e+01 a.87.1.1,b.55.1.1 103873,103874 1bu6O 501 7.95e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1jzuA 157 7.96e+01 b.60.1.1 84271 1m16A 146 7.99e+01 b.42.1.1 91164 1dim 381 8.00e+01 3sil b.68.1.1 27544 1adwA 123 8.01e+01 1bqk b.6.1.1 22893 1m1hA 248 8.10e+01 b.114.1.1,d.58.42.1 78415,78416 1h6uA 308 8.14e+01 b.1.18.15,c.10.2.1 65688,65689 1pswA 348 8.16e+01 c.87.1.7 88287 3sil 379 8.42e+01 3sil b.68.1.1 27542 1h4xA 117 8.55e+01 1auz c.13.2.1 60626 8prn 289 8.72e+01 3prn f.4.3.1 43767 1w2xA 758 8.85e+01 c.14.1.4,c.14.1.4 109134,109135 1uumA 372 8.88e+01 c.1.4.1 100010 1kit 757 8.96e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616