# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1awqA 164 3.41e-36 2cpl b.62.1.1 27461 1yndA 165 5.16e-36 1awsA 164 5.29e-36 2cpl b.62.1.1 27431 2bitX 165 5.60e-36 2cpl 165 5.78e-36 2cpl b.62.1.1 27420 1cwoA 165 1.01e-35 2cpl b.62.1.1 27445 1dywA 173 1.16e-35 2cpl b.62.1.1 27505 1qoiA 177 1.17e-35 2cpl b.62.1.1 27490 2rmcA 182 2.02e-35 2cpl b.62.1.1 27491 1xo7A 166 5.65e-35 1zcxA 178 6.61e-35 2cfeA 162 6.68e-35 1a58 177 8.06e-35 2cpl b.62.1.1 27495 1vdnA 162 1.57e-34 1h0pA 182 2.98e-34 b.62.1.1 76450 1ihgA 370 3.11e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 2a2nA 176 1.27e-32 1xwnA 174 8.56e-32 1zkcA 197 1.08e-31 2fu0A 160 6.06e-31 2b71A 196 2.72e-30 1j2aA 166 7.51e-28 b.62.1.1 90779 1v9tA 166 1.21e-27 b.62.1.1 108451 1lopA 164 1.26e-27 2cpl b.62.1.1 27510 1clh 166 7.80e-27 2cpl b.62.1.1 27512 1zx8A 136 5.98e-01 1mxiA 160 1.01e+00 c.116.1.1 79646 1fj2A 232 1.80e+00 1auoA c.69.1.14 34720 1icpA 376 2.14e+00 1oyc c.1.4.1 62270 1pswA 348 2.80e+00 c.87.1.7 88287 1w96A 554 4.91e+00 1ituA 369 6.82e+00 c.1.9.7 71423 1yoxA 250 6.92e+00 1dctA 324 8.59e+00 6mhtA c.66.1.26 34244 1kbvA 327 1.12e+01 b.6.1.3,b.6.1.3 68395,68396 1s31A 273 1.48e+01 1zirA 173 1.68e+01 2b4wA 315 1.69e+01 1sglA 209 1.87e+01 d.124.1.1 105536 1a5dA 173 1.90e+01 1amm b.11.1.1,b.11.1.1 23614,23615 2aexA 346 1.91e+01 1bssA 244 1.94e+01 1rvaA c.52.1.2 33256 1n25A 368 2.11e+01 c.37.1.20 85264 1wraA 308 2.14e+01 1z41A 338 2.15e+01 1vhoA 346 2.18e+01 b.49.3.1,c.56.5.4 100694,100695 1vqvA 306 2.26e+01 1j7xA 302 2.30e+01 c.14.1.2 66425 1m8uA 173 2.30e+01 b.11.1.1,b.11.1.1 91233,91234 1b96A 244 2.47e+01 1rvaA c.52.1.2 33268 1b97A 244 2.51e+01 1rvaA c.52.1.2 33252 2a1rA 430 2.54e+01 1rvaA 244 2.56e+01 1rvaA c.52.1.2 33240 1gvoA 364 2.57e+01 c.1.4.1 76357 1h8uA 117 2.62e+01 1h8uA d.169.1.1 60793 1b94A 244 2.65e+01 1rvaA c.52.1.2 33250 1h61A 364 2.79e+01 1oyc c.1.4.1 60657 1nbfA 353 2.84e+01 d.3.1.9 80387 2gefA 217 2.91e+01 1rx0A 393 2.94e+01 a.29.3.1,e.6.1.1 98007,98008 1amm 174 2.97e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1o26A 232 3.01e+01 d.207.1.1 86566 1vypX 364 3.03e+01 c.1.4.1 108905 1rypI 222 3.06e+01 d.153.1.4 41877 2bibA 547 3.19e+01 1a45 173 3.31e+01 1amm b.11.1.1,b.11.1.1 23602,23603 1zr5A 214 3.33e+01 1r3nA 462 3.33e+01 c.56.5.4,d.58.19.1 96945,96946 1agjA 242 3.40e+01 1agjA b.47.1.1 25827 1sx5A 244 3.42e+01 c.52.1.2 99023 1cz7A 406 3.48e+01 1bg2 c.37.1.9 32194 1uroA 367 3.51e+01 1uroA c.1.22.1 29675 2c1iA 431 3.56e+01 1y42X 392 3.58e+01 1m3iA 471 3.60e+01 f.9.1.1 91178 4gcr 174 3.60e+01 1amm b.11.1.1,b.11.1.1 23589,23590 1kq4A 232 3.74e+01 d.207.1.1 68791 2c1gA 431 3.74e+01 1r3sA 367 3.88e+01 c.1.22.1 96963 1pa2A 306 4.04e+01 1bgp a.93.1.1 18693 1o6zA 303 4.04e+01 c.2.1.5,d.162.1.1 81107,81108 1zoxA 113 4.10e+01 1wl8A 189 4.11e+01 1uxjA 309 4.17e+01 c.2.1.5,d.162.1.1 108112,108113 1m3jA 471 4.36e+01 f.9.1.1 91182 2bdrA 175 4.63e+01 1j5qA 437 4.73e+01 b.121.2.3,b.121.2.3 77084,77085 1ichA 112 4.89e+01 a.77.1.2 71182 1svmA 377 4.98e+01 1bqcA 302 4.99e+01 1bqcA c.1.8.3 28831 2madH 373 5.01e+01 2bbkH b.69.2.1 27639 1qreA 247 5.02e+01 1qreA b.81.1.5 28066 1kzqA 289 5.06e+01 b.6.2.1,b.6.2.1 73374,73375 2fox 138 5.14e+01 5nul c.23.5.1 31197 1c8zA 265 5.16e+01 1c8zA d.23.1.1 38375 1ku2A 241 5.21e+01 a.4.13.1,a.177.1.1 83096,83097 1m3yA 413 5.21e+01 b.121.2.3,b.121.2.3 78579,78580 1fx2A 235 5.29e+01 1fx2A d.58.29.1 39430 5nul 138 5.39e+01 5nul c.23.5.1 31191 1dgnA 89 5.52e+01 1dgnA a.77.1.3 18436 2bneA 241 5.54e+01 1m5sA 297 5.56e+01 d.58.33.1,d.58.33.1 74511,74512 1pfo 500 5.64e+01 1pfo f.9.1.1 43826 2b49A 287 5.73e+01 1fjxA 327 5.78e+01 6mhtA c.66.1.26 34228 1vkdA 338 5.85e+01 b.67.2.4 108644 1sr2A 116 5.92e+01 2fvx 138 5.94e+01 5nul c.23.5.1 31200 1vyrA 364 6.02e+01 c.1.4.1 108906 1ur5A 309 6.04e+01 c.2.1.5,d.162.1.1 99807,99808 1qlpA 394 6.05e+01 1ovaA e.1.1.1 42628 1hgxA 183 6.22e+01 1tc1A c.61.1.1 34027 2airB 153 6.25e+01 3mhtA 327 6.30e+01 6mhtA c.66.1.26 34234 1z7gA 217 6.35e+01 1h4aX 173 6.63e+01 b.11.1.1,b.11.1.1 83479,83480 1n6eA 1071 6.68e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 6mhtA 327 6.82e+01 6mhtA c.66.1.26 34226 2b7oA 464 6.83e+01 1nogA 177 7.11e+01 a.25.2.2 85923 1u9lA 70 7.14e+01 a.60.4.2 107751 1qmpA 130 7.26e+01 1dz3A c.23.1.1 31106 2bf6A 449 7.37e+01 2abbA 364 7.47e+01 1mr3F 181 7.51e+01 c.37.1.8 79422 1elpA 173 7.57e+01 1amm b.11.1.1,b.11.1.1 23596,23597 2c7pA 327 7.57e+01 1k32A 1045 7.59e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1zgmA 248 7.60e+01 1ddgA 374 7.68e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2fug5 207 7.76e+01 1rkd 309 8.06e+01 1rkd c.72.1.1 34928 1yadA 221 8.08e+01 2gk3A 256 8.10e+01 1w6uA 302 8.20e+01 2fnoA 248 8.21e+01 1jy5A 212 8.43e+01 d.124.1.1 71940 1j1iA 296 8.50e+01 c.69.1.10 83977 1qo2A 241 8.51e+01 1qo2A c.1.2.1 28533 2et1A 201 8.66e+01 1fx4A 231 8.73e+01 1fx2A d.58.29.1 39431