# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihgA 370 1.21e-24 2cpl a.118.8.1,b.62.1.1 62380,62381 1yndA 165 1.52e-24 1dywA 173 1.97e-24 2cpl b.62.1.1 27505 1h0pA 182 2.63e-23 b.62.1.1 76450 1lopA 164 6.29e-19 2cpl b.62.1.1 27510 1gteA 1025 5.32e-01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1lq9A 112 5.35e-01 d.58.4.3 78129 1pbyA 489 2.62e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1bdfA 235 2.67e+00 1bdfA d.74.3.1,d.181.1.1 39727,42602 1cr5A 189 3.34e+00 1cr5A b.52.2.3,d.31.1.1 26931,38465 1fvuB 125 3.60e+00 1ixxB d.169.1.1 42346 1fh0A 221 3.72e+00 1cs8A d.3.1.1 59832 1i8dA 213 4.07e+00 b.43.4.3,b.43.4.3 61953,61954 1dz3A 130 4.74e+00 1dz3A c.23.1.1 31105 2gefA 217 4.99e+00 1c4rA 182 5.74e+00 1c4rA b.29.1.4 24229 1agjA 242 7.21e+00 1agjA b.47.1.1 25827 1ntyA 311 7.44e+00 a.87.1.1,b.55.1.1 103873,103874 1us5A 314 7.75e+00 c.94.1.1 99856 1pa1A 310 7.84e+00 c.45.1.2 94404 1h54A 754 8.82e+00 a.102.1.4,b.30.5.3 60634,60635 2gk3A 256 9.46e+00 1e8gA 560 9.62e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1idpA 172 9.68e+00 d.17.4.1 83685 1jmxA 494 9.81e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1v0wA 506 1.06e+01 d.136.1.2,d.136.1.2 108220,108221 1b77A 228 1.13e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1o7iA 119 1.14e+01 b.40.4.3 86642 1fs0E 138 1.25e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1dc1A 323 1.31e+01 1dc1A c.52.1.11 33321 1lqtA 456 1.43e+01 c.3.1.1,c.4.1.1 74198,74199 1g291 372 1.44e+01 1g291 1w96A 554 1.47e+01 1dqiA 124 1.55e+01 1do6A b.1.13.1 22357 1vr8A 142 1.57e+01 2gf9A 189 1.57e+01 1lf7A 182 1.60e+01 b.60.1.1 73878 1mh1 186 1.61e+01 1eesA c.37.1.8 32002 1g5bA 221 1.63e+01 1g5bA d.159.1.3 60261 1s2oA 244 1.68e+01 3cla 213 1.68e+01 3cla c.43.1.1 32610 1q8fA 313 1.76e+01 c.70.1.1 96203 1zoiA 276 1.77e+01 1oxxK 353 1.94e+01 b.40.6.3,c.37.1.12 93715,93716 1bcpB 199 1.94e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1h4xA 117 1.98e+01 1auz c.13.2.1 60626 1deuA 277 2.00e+01 1theB d.3.1.1 37085 1xk7A 408 2.04e+01 1vfjA 116 2.07e+01 1y7bA 542 2.10e+01 1n62B 809 2.15e+01 d.41.1.1,d.133.1.1 80092,80093 1f20A 435 2.18e+01 b.43.4.1,c.25.1.4 64932,64933 1jhfA 202 2.30e+01 a.4.5.2,b.87.1.1 63057,63058 1xqaA 113 2.46e+01 1rg8A 146 2.50e+01 1p4oA 322 2.51e+01 d.144.1.7 87775 1jer 138 2.58e+01 2cbp b.6.1.1 23022 1n13B 113 2.63e+01 1fxoA 293 2.65e+01 1g0rA c.68.1.6 34524 1ieaB 228 2.65e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1f0xA 571 2.69e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1nytA 271 2.71e+01 c.2.1.7,c.58.1.5 86417,86418 1fjgE 162 2.76e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1acf 125 2.78e+01 3nul d.110.1.1 40882 1mpgA 282 2.83e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1ja1A 622 2.83e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1dg9A 157 2.84e+01 1dg9A c.44.1.1 32637 1ve2A 235 3.02e+01 1oalA 151 3.07e+01 b.1.8.1 86739 1lam 484 3.07e+01 1lam c.50.1.1,c.56.5.3 33166,33829 2bikB 313 3.13e+01 1bfg 146 3.16e+01 1bfg b.42.1.1 25485 1rc9A 221 3.24e+01 1mixA 206 3.31e+01 a.11.2.1,b.55.1.5 79166,79167 1fsgA 233 3.33e+01 1qk3A c.61.1.1 34029 1h7sA 365 3.39e+01 d.14.1.3,d.122.1.2 65705,65706 1m40A 263 3.39e+01 e.3.1.1 74437 1c0pA 363 3.44e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1qwgA 251 3.56e+01 c.1.27.1 96473 1nykA 165 3.58e+01 b.33.1.1 86408 1ewnA 219 3.59e+01 1bnkA b.46.1.2 25762 1oygA 447 3.65e+01 b.67.2.2 93726 1ygtA 111 3.80e+01 1g1tA 157 3.91e+01 d.169.1.1,g.3.11.1 65104,65105 1mxiA 160 4.01e+01 c.116.1.1 79646 1ooyA 481 4.03e+01 c.124.1.3,c.124.1.2 93388,93389 1bqk 124 4.06e+01 1bqk b.6.1.1 22889 1gt1A 159 4.09e+01 b.60.1.1 90515 1nkiA 135 4.10e+01 d.32.1.2 91941 1a8s 273 4.11e+01 1brt c.69.1.12 34710 1rzhH 260 4.20e+01 b.41.1.1,f.23.10.1 98162,98163 1k07A 263 4.22e+01 d.157.1.1 77218 1f9zA 135 4.25e+01 1qipA d.32.1.1 38484 1h5rA 293 4.30e+01 c.68.1.6 65623 1qh5A 260 4.31e+01 1qh5A d.157.1.2 42057 1ifqA 138 4.34e+01 1ifqA d.110.4.1 62350 1vjpA 394 4.36e+01 c.2.1.3,d.81.1.3 100828,100829 1xe7A 203 4.43e+01 1j1bA 420 4.46e+01 d.144.1.7 90758 1ec7A 446 4.54e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1hy7A 173 4.54e+01 d.92.1.11 65957 2nlrA 234 4.59e+01 2nlrA b.29.1.11 24344 1isiA 265 4.68e+01 e.4.1.1 71394 1uufA 369 4.70e+01 b.35.1.2,c.2.1.1 100006,100007 1v7wA 807 4.72e+01 a.102.1.4,b.30.5.3 108411,108412 1e9pA 151 4.75e+01 1mfmA b.1.8.1 22215 1l7lA 121 4.83e+01 b.18.1.16 77790 1fiqC 763 4.91e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1v6sA 390 4.93e+01 c.86.1.1 100424 1ew0A 130 4.97e+01 1drmA d.110.3.2 40905 1i3cA 149 4.98e+01 c.23.1.1 71112 1ikoP 178 5.09e+01 b.6.1.5 71243 1em2A 229 5.19e+01 1em2A d.129.3.2 41321 1j7gA 144 5.31e+01 c.110.1.1 84130 1vjvA 415 5.33e+01 d.3.1.9 108632 1k4nA 192 5.36e+01 d.32.1.5 72059 1v8hA 107 5.39e+01 1erjA 393 5.42e+01 1erjA b.69.4.1 27660 1m2dA 110 5.42e+01 c.47.1.11 78476 2sli 679 5.43e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1ixcA 294 5.44e+01 a.4.5.37,c.94.1.1 83764,83765 1d3gA 367 5.49e+01 1d3gA c.1.4.1 28600 1tjxA 159 5.53e+01 1h6tA 291 5.59e+01 b.1.18.15,c.10.2.1 65686,65687 1llnA 262 5.64e+01 d.165.1.1 84625 1lugA 259 5.66e+01 b.74.1.1 91127 1gd1O 334 5.67e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1fonA 240 5.68e+01 5ptp b.47.1.2 26231 1j3wA 163 5.71e+01 d.110.7.1 90833 3proC 166 5.76e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1v30A 124 5.82e+01 1qgvA 142 5.84e+01 1qgvA c.47.1.8 33056 1g0sA 209 5.84e+01 1g0sA d.113.1.1 60187 1jtdB 273 5.84e+01 b.69.5.2 67265 1g66A 207 5.95e+01 1bs9 c.69.1.30 31329 1a70 97 5.96e+01 1awd d.15.4.1 37678 1a2zA 220 5.97e+01 1a2zA c.56.4.1 33794 1dytA 133 6.10e+01 7rsa d.5.1.1 37288 1jc4A 148 6.13e+01 1jc4A d.32.1.4 62863 1d5tA 433 6.35e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1pz7A 204 6.39e+01 b.29.1.4 95405 1at3A 247 6.42e+01 1at3A b.57.1.1 27021 1sjyA 159 6.44e+01 d.113.1.1 98900 1dnlA 199 6.44e+01 1ci0A b.45.1.1 25753 1wvfA 520 6.44e+01 1cb8A 678 6.63e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1dzlA 505 6.75e+01 1dzlA b.121.6.1 23586 1s1fA 406 6.81e+01 2d5cA 263 6.86e+01 1kgsA 225 6.86e+01 a.4.6.1,c.23.1.1 68596,68597 1frrA 95 6.89e+01 1awd d.15.4.1 37674 1f39A 101 6.90e+01 1umuA b.87.1.1 28386 1g8sA 230 7.02e+01 c.66.1.3 90507 1n9eA 787 7.13e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1x7dA 350 7.13e+01 1r9wA 145 7.15e+01 d.89.1.2 97264 1xppA 115 7.18e+01 1lzlA 323 7.27e+01 c.69.1.2 78306 1sz7A 200 7.28e+01 1a2yB 116 7.34e+01 1gc1H b.1.1.1 19927 1w0pA 781 7.37e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1hq0A 295 7.39e+01 1hzgA d.194.1.1 61122 1byfA 125 7.46e+01 1byfA d.169.1.1 42419 1jr7A 311 7.50e+01 b.82.2.3 63255 1txlA 215 7.58e+01 b.60.1.4 107429 1rtqA 299 7.61e+01 c.56.5.4 97819 1vkpA 383 7.65e+01 d.126.1.6 108686 1h6uA 308 7.72e+01 b.1.18.15,c.10.2.1 65688,65689 1lniA 96 7.74e+01 d.1.1.2 74046 1jkeA 145 7.76e+01 c.110.1.1 66791 1n6aA 259 7.81e+01 b.76.2.1,b.85.7.1 80121,80122 1a8y 367 7.85e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1yfqA 342 7.87e+01 1ii7A 333 7.97e+01 1ii7A d.159.1.4 62415 2eng 210 8.13e+01 2eng b.52.1.1 26895 1itbB 315 8.16e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1j58A 385 8.19e+01 b.82.1.2 71531 1vlaA 150 8.25e+01 d.227.1.2 108735 1u0fA 564 8.26e+01 1zjjA 263 8.27e+01 1c96A 753 8.28e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1dkiA 371 8.30e+01 1dkiA d.3.1.1 37090 1jbeA 128 8.32e+01 3chy c.23.1.1 62845 1fh9A 312 8.38e+01 1taxA c.1.8.3 28913 1g7nA 131 8.38e+01 b.60.1.2 83274 1qv9A 283 8.40e+01 c.127.1.1 96356 1e1oA 504 8.64e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1ktgA 138 8.69e+01 d.113.1.1 72972 1ah7 245 8.73e+01 1ah7 a.124.1.1 19339 1fdr 248 8.88e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1j8rA 196 8.90e+01 1j8rA b.2.3.3 62745 1jyaA 130 8.90e+01 d.198.1.1 67453 1rk6A 496 8.91e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1efpB 252 8.99e+01 1efvB c.26.2.3 31636