# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 3.24e-28 1dywA 173 3.59e-28 2cpl b.62.1.1 27505 1ihgA 370 4.75e-28 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 6.73e-27 b.62.1.1 76450 1lopA 164 2.45e-21 2cpl b.62.1.1 27510 1gteA 1025 8.09e-01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ewnA 219 1.08e+00 1bnkA b.46.1.2 25762 1lq9A 112 2.21e+00 d.58.4.3 78129 1evlA 401 2.43e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 1o7iA 119 3.69e+00 b.40.4.3 86642 1v0wA 506 4.20e+00 d.136.1.2,d.136.1.2 108220,108221 1vfjA 116 6.35e+00 1c4rA 182 6.39e+00 1c4rA b.29.1.4 24229 1ezwA 349 6.70e+00 1ezwA c.1.16.3 29558 1mxiA 160 7.41e+00 c.116.1.1 79646 1dz3A 130 7.72e+00 1dz3A c.23.1.1 31105 1dqiA 124 7.87e+00 1do6A b.1.13.1 22357 1lf7A 182 8.16e+00 b.60.1.1 73878 1h5rA 293 1.08e+01 c.68.1.6 65623 1umkA 275 1.09e+01 1fxoA 293 1.24e+01 1g0rA c.68.1.6 34524 1qwgA 251 1.32e+01 c.1.27.1 96473 1e1oA 504 1.34e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1dg9A 157 1.40e+01 1dg9A c.44.1.1 32637 1fonA 240 1.54e+01 5ptp b.47.1.2 26231 1cr5A 189 1.60e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1lam 484 1.62e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1e9pA 151 1.66e+01 1mfmA b.1.8.1 22215 1a70 97 1.78e+01 1awd d.15.4.1 37678 1dkiA 371 1.78e+01 1dkiA d.3.1.1 37090 1vjvA 415 1.87e+01 d.3.1.9 108632 1bd0A 388 1.89e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 2gk3A 256 1.91e+01 1lqtA 456 2.00e+01 c.3.1.1,c.4.1.1 74198,74199 1erjA 393 2.04e+01 1erjA b.69.4.1 27660 2gf9A 189 2.10e+01 1fvuB 125 2.12e+01 1ixxB d.169.1.1 42346 1fiqC 763 2.14e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1b77A 228 2.15e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1ja1A 622 2.23e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2gefA 217 2.25e+01 1v8hA 107 2.32e+01 1rg8A 146 2.34e+01 1jofA 365 2.47e+01 b.69.10.1 71775 1fsgA 233 2.51e+01 1qk3A c.61.1.1 34029 1pa1A 310 2.55e+01 c.45.1.2 94404 1sgwA 214 2.61e+01 c.37.1.12 105541 1fjgE 162 2.76e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1bdfA 235 2.76e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1ogwA 76 2.83e+01 d.15.1.1 87001 1mpgA 282 2.84e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1m6pA 152 2.84e+01 1m6pA b.64.1.1 27519 1w96A 554 2.93e+01 1h7sA 365 2.98e+01 d.14.1.3,d.122.1.2 65705,65706 1bcpB 199 3.01e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1bfg 146 3.16e+01 1bfg b.42.1.1 25485 1xe7A 203 3.17e+01 1fs0E 138 3.18e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1lzlA 323 3.18e+01 c.69.1.2 78306 1zoiA 276 3.18e+01 1g291 372 3.24e+01 1g291 1f39A 101 3.25e+01 1umuA b.87.1.1 28386 1jbeA 128 3.49e+01 3chy c.23.1.1 62845 1rzhH 260 3.51e+01 b.41.1.1,f.23.10.1 98162,98163 1gj7B 253 3.53e+01 1g1tA 157 3.58e+01 d.169.1.1,g.3.11.1 65104,65105 1oalA 151 3.68e+01 b.1.8.1 86739 1j71A 334 3.77e+01 1eagA b.50.1.2 62669 1jmxA 494 3.81e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1s2oA 244 4.06e+01 1acf 125 4.12e+01 3nul d.110.1.1 40882 1xk7A 408 4.12e+01 1aop 497 4.19e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1idpA 172 4.26e+01 d.17.4.1 83685 1i3cA 149 4.32e+01 c.23.1.1 71112 1o9wA 177 4.34e+01 b.2.3.5 86713 1frrA 95 4.47e+01 1awd d.15.4.1 37674 1c96A 753 4.50e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1i12A 160 4.62e+01 1i21A d.108.1.1 61515 1h4xA 117 4.65e+01 1auz c.13.2.1 60626 1ikoP 178 4.67e+01 b.6.1.5 71243 1y7bA 542 4.70e+01 1zk5A 176 4.73e+01 1cliA 345 4.74e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1oygA 447 4.79e+01 b.67.2.2 93726 1tjxA 159 4.87e+01 1e5kA 201 4.92e+01 1fr9A c.68.1.8 34578 1llnA 262 4.94e+01 d.165.1.1 84625 1rk6A 496 5.03e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1f20A 435 5.13e+01 b.43.4.1,c.25.1.4 64932,64933 1j58A 385 5.15e+01 b.82.1.2 71531 1jer 138 5.23e+01 2cbp b.6.1.1 23022 1mh1 186 5.28e+01 1eesA c.37.1.8 32002 1dnlA 199 5.34e+01 1ci0A b.45.1.1 25753 1rc9A 221 5.47e+01 1h54A 754 5.52e+01 a.102.1.4,b.30.5.3 60634,60635 3sil 379 5.60e+01 3sil b.68.1.1 27542 1bed 181 5.65e+01 1fvkA c.47.1.13 90330 1ieaB 228 5.67e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1jfbA 404 5.83e+01 a.104.1.1 66624 1dytA 133 5.90e+01 7rsa d.5.1.1 37288 1ktgA 138 5.92e+01 d.113.1.1 72972 1agjA 242 5.95e+01 1agjA b.47.1.1 25827 1fh0A 221 5.99e+01 1cs8A d.3.1.1 59832 1isiA 265 6.01e+01 e.4.1.1 71394 1pbyB 337 6.07e+01 b.69.2.2 94422 1ixkA 315 6.09e+01 c.66.1.38 90716 1w0pA 781 6.19e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1gqnA 252 6.24e+01 c.1.10.1 90514 1i6aA 219 6.40e+01 c.94.1.1 61827 1hdoA 206 6.45e+01 1he2A c.2.1.2 60965 1hy7A 173 6.49e+01 d.92.1.11 65957 1a7i 81 6.53e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1j3wA 163 6.62e+01 d.110.7.1 90833 1gx5A 536 6.64e+01 e.8.1.4 70682 1e8gA 560 6.67e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1pbyA 489 6.83e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1qwyA 291 6.88e+01 b.84.3.2 96509 1thfD 253 6.93e+01 1thfD c.1.2.1 28535 1v6sA 390 7.05e+01 c.86.1.1 100424 1ju2A 536 7.06e+01 c.3.1.2,d.16.1.1 77169,77170 1iq9A 61 7.15e+01 g.7.1.1 90669 1vlaA 150 7.26e+01 d.227.1.2 108735 1g5bA 221 7.31e+01 1g5bA d.159.1.3 60261 1hyvA 166 7.38e+01 1b9dA c.55.3.2 61424 1qgvA 142 7.38e+01 1qgvA c.47.1.8 33056 2bikB 313 7.42e+01 1pbjA 125 7.51e+01 d.37.1.1,d.37.1.1 94414,94415 1g8sA 230 7.65e+01 c.66.1.3 90507 1lugA 259 7.74e+01 b.74.1.1 91127 1f9zA 135 7.78e+01 1qipA d.32.1.1 38484 1vpjA 192 7.78e+01 1us5A 314 7.95e+01 c.94.1.1 99856 1uxy 340 8.13e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1a8s 273 8.15e+01 1brt c.69.1.12 34710 1s1fA 406 8.19e+01 1faaA 124 8.33e+01 1erv c.47.1.1 32738 1dgnA 89 8.36e+01 1dgnA a.77.1.3 18436 1lniA 96 8.39e+01 d.1.1.2 74046 1flcA 432 8.45e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 2trxA 108 8.47e+01 1thx c.47.1.1 32719 1ah7 245 8.48e+01 1ah7 a.124.1.1 19339 1mqkH 127 8.60e+01 b.1.1.1 85053 1euvB 86 8.66e+01 1a5r d.15.1.1 37598 1xubA 298 8.70e+01 1oxxK 353 8.70e+01 b.40.6.3,c.37.1.12 93715,93716 1dzfA 215 8.71e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1j7gA 144 8.73e+01 c.110.1.1 84130 1xqaA 113 8.73e+01 1a2yB 116 8.91e+01 1gc1H b.1.1.1 19927 1q8fA 313 8.93e+01 c.70.1.1 96203 1ro0A 216 8.97e+01 d.264.1.2 97664