# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 4.47e-36 1dywA 173 4.32e-35 2cpl b.62.1.1 27505 1ihgA 370 5.64e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 9.17e-34 b.62.1.1 76450 1lopA 164 4.68e-27 2cpl b.62.1.1 27510 1mxiA 160 6.89e-01 c.116.1.1 79646 1icpA 376 7.62e-01 1oyc c.1.4.1 62270 1f7uA 607 3.32e+00 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1dgnA 89 4.07e+00 1dgnA a.77.1.3 18436 1isiA 265 4.61e+00 e.4.1.1 71394 1fj2A 232 5.47e+00 1auoA c.69.1.14 34720 1k4nA 192 6.45e+00 d.32.1.5 72059 1a8l 226 8.92e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1s95A 333 8.99e+00 d.159.1.3 105375 2gefA 217 9.58e+00 1h7sA 365 1.24e+01 d.14.1.3,d.122.1.2 65705,65706 1w96A 554 1.30e+01 1dz3A 130 1.49e+01 1dz3A c.23.1.1 31105 1vjvA 415 1.57e+01 d.3.1.9 108632 1gpmA 525 1.77e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1e19A 314 1.84e+01 1b7bA c.73.1.1 34967 1jk7A 323 1.97e+01 1auiA d.159.1.3 63144 1vlaA 150 2.07e+01 d.227.1.2 108735 1vyrA 364 2.17e+01 c.1.4.1 108906 1tw6A 133 2.20e+01 1fi2A 201 2.53e+01 1fi2A b.82.1.2 59845 1a0tP 413 2.66e+01 1a0tP f.4.3.2 43794 1tmxA 293 2.85e+01 1sqsA 242 2.92e+01 c.23.5.5 98968 1w6uA 302 2.93e+01 1a8y 367 3.31e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1sx5A 244 3.33e+01 c.52.1.2 99023 1rliA 184 3.35e+01 c.23.5.6 97647 1b06A 210 3.59e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1e5kA 201 3.61e+01 1fr9A c.68.1.8 34578 1gzcA 239 3.62e+01 b.29.1.1 70803 1uscA 178 3.67e+01 b.45.1.2 99860 1at3A 247 4.03e+01 1at3A b.57.1.1 27021 1kzqA 289 4.17e+01 b.6.2.1,b.6.2.1 73374,73375 1b79A 119 4.79e+01 1b79A a.81.1.1 18451 1hu3A 260 4.80e+01 1hu3A a.118.1.14 19137 1qreA 247 5.02e+01 1qreA b.81.1.5 28066 1qz5A 375 5.50e+01 c.55.1.1,c.55.1.1 96614,96615 1amm 174 5.52e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1d3bA 75 5.61e+01 1d3bA b.38.1.1 24798 1dd9A 338 5.83e+01 1dd9A e.13.1.1 43254 1n4wA 504 5.94e+01 c.3.1.2,d.16.1.1 91676,91677 1qv9A 283 6.02e+01 c.127.1.1 96356 1woqA 267 6.15e+01 c.55.1.10,c.55.1.10 109462,109463 1ifqA 138 6.23e+01 1ifqA d.110.4.1 62350 1thfD 253 6.29e+01 1thfD c.1.2.1 28535 1g8lA 411 6.45e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1eo6A 117 6.50e+01 1eo6A d.15.1.3 37609 1ituA 369 6.59e+01 c.1.9.7 71423 1dbwA 126 6.92e+01 1dbwA c.23.1.1 31095 1dl5A 317 6.96e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1f5nA 592 7.01e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1pbyA 489 7.04e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1ee8A 266 7.04e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1evlA 401 7.30e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1cliA 345 7.36e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1uk8A 282 7.45e+01 c.69.1.10 107907 1e9pA 151 7.86e+01 1mfmA b.1.8.1 22215 1gai 472 7.94e+01 1ayx a.102.1.1 18819 1n9eA 787 7.97e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1b77A 228 7.98e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1w3iA 293 8.08e+01 c.1.10.1 109152 1g55A 343 8.20e+01 1g55A c.66.1.26 34247 3seb 238 8.20e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1hgxA 183 8.31e+01 1tc1A c.61.1.1 34027 1ev2E 220 8.32e+01 1cvsC b.1.1.4,b.1.1.4 21738,21739 1ia8A 289 8.35e+01 1ia8A d.144.1.7 62112 1fe0A 68 8.45e+01 1cc8A d.58.17.1 39345 1t6cA 315 8.52e+01 c.55.1.8,c.55.1.8 106558,106559 1f9vA 347 8.96e+01 1bg2 c.37.1.9 59745