# List of top-scoring protein chains for T0290.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dywA 173 1.37e-38 2cpl b.62.1.1 27505 1awqA 164 1.67e-38 2cpl b.62.1.1 27461 1yndA 165 1.67e-38 1cynA 178 1.98e-38 2cpl b.62.1.1 27489 1m9eA 164 2.11e-38 b.62.1.1 84894 1ihgA 370 2.28e-38 2cpl a.118.8.1,b.62.1.1 62380,62381 1a58 177 2.38e-38 2cpl b.62.1.1 27495 2alfA 164 2.61e-38 2bitX 165 2.61e-38 1qngA 170 8.28e-38 2cpl b.62.1.1 27507 1qnhA 170 2.53e-37 2cpl b.62.1.1 27508 1zmfA 165 2.53e-37 1zcxA 178 2.56e-37 2cfeA 162 2.67e-37 1xo7A 166 2.83e-37 2eslA 190 4.90e-37 2rmcA 182 5.36e-37 2cpl b.62.1.1 27491 1qoiA 177 8.21e-37 2cpl b.62.1.1 27490 1vdnA 162 9.62e-37 1h0pA 182 5.32e-36 b.62.1.1 76450 1xyhA 161 1.46e-34 2a2nA 176 1.87e-34 1zkcA 197 2.59e-34 1xwnA 174 3.07e-34 2fu0A 160 1.85e-32 1z81A 229 2.46e-32 2b71A 196 3.47e-32 2c3bA 172 6.84e-32 1w74A 191 1.52e-31 1v9tA 166 1.01e-29 b.62.1.1 108451 2nul 164 1.11e-29 2cpl b.62.1.1 27511 1clh 166 1.11e-29 2cpl b.62.1.1 27512 1lopA 164 3.02e-29 2cpl b.62.1.1 27510 1wq5A 268 7.67e-01 1p6qA 129 2.91e+00 c.23.1.1 104074 1xc4A 268 3.64e+00 1y42X 392 6.12e+00 2as9A 210 8.19e+00 1xcfA 268 9.06e+00 2fug5 207 1.05e+01 1o02A 500 1.33e+01 c.82.1.1 86499 1cw3A 494 1.33e+01 1bpwA c.82.1.1 35349 1zumA 500 1.34e+01 1ufbA 127 1.46e+01 a.24.16.3 99331 2a9vA 212 1.71e+01 1kfbA 268 1.74e+01 c.1.2.4 77369 1beuA 268 1.77e+01 2tysA c.1.2.4 28574 1tjpA 268 1.90e+01 1dgnA 89 2.27e+01 1dgnA a.77.1.3 18436 1mxiA 160 2.48e+01 c.116.1.1 79646 1o04A 500 2.51e+01 c.82.1.1 86508 1ag8A 499 2.63e+01 1bpwA c.82.1.1 35341 1mdbA 539 2.90e+01 e.23.1.1 79008 1ichA 112 2.93e+01 a.77.1.2 71182 2sil 381 3.03e+01 3sil b.68.1.1 27543 1gl9B 1054 3.05e+01 c.37.1.16,c.37.1.16,e.10.1.1 65291,65292,65293 1gkuB 1054 3.06e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 3sil 379 3.24e+01 3sil b.68.1.1 27542 1zowA 313 3.25e+01 1tv5A 443 3.36e+01 2bmbA 545 3.77e+01 1wi1A 126 3.79e+01 1yudA 170 4.13e+01 1kfcA 268 4.44e+01 c.1.2.4 77371 1uocA 289 4.62e+01 c.55.3.9 99686 1qopA 268 4.88e+01 2tysA c.1.2.4 28570 1vjvA 415 5.11e+01 d.3.1.9 108632 1rscI 111 5.29e+01 1df9A 191 6.03e+01 1befA b.47.1.3 26420 2bm3A 166 6.14e+01 1dz3A 130 6.14e+01 1dz3A c.23.1.1 31105 2gm3A 175 6.17e+01 1wisA 124 6.20e+01 1tcwA 99 6.51e+01 1fmb b.50.1.1 26760 1qwgA 251 6.63e+01 c.1.27.1 96473 1zx8A 136 6.66e+01 2c6nA 612 6.75e+01 2a5iA 306 7.14e+01 2a5kA 307 7.16e+01 1q2wA 308 7.22e+01 b.47.1.4 88355 2amdA 311 7.26e+01 1ej6B 1275 7.30e+01 i.7.1.1 45968 2masA 314 7.37e+01 2masA c.70.1.1 34810 1uzeA 589 7.46e+01 d.92.1.5 108174 1nyaA 176 7.63e+01 a.39.1.5 92335 1d5wA 126 7.67e+01 1dbwA c.23.1.1 31099 1ux6A 350 7.69e+01 b.29.1.16,g.75.1.1 100145,100146 2fomB 185 7.74e+01 1lluA 342 7.90e+01 b.35.1.2,c.2.1.1 91064,91065 1z1jA 306 7.91e+01 1n7dA 699 7.98e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 1op0A 234 8.12e+01 b.47.1.2 104019 1xocA 520 8.15e+01 1i4vA 115 8.19e+01 1umuA b.87.1.1 61734 2pkaA 80 8.43e+01 2pkaA b.47.1.2 26302 1cb4A 151 8.51e+01 1mfmA b.1.8.1 22236 1e9oA 152 8.61e+01 1mfmA b.1.8.1 22227 1uae 419 8.67e+01 1uae d.68.2.2 39574 1e9qA 151 8.68e+01 1mfmA b.1.8.1 22217 1op2A 234 8.69e+01 b.47.1.2 104020