# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 3.33e-39 1dywA 173 3.42e-39 2cpl b.62.1.1 27505 1a58 177 3.78e-39 2cpl b.62.1.1 27495 1ihgA 370 6.14e-39 2cpl a.118.8.1,b.62.1.1 62380,62381 1awsA 164 7.21e-39 2cpl b.62.1.1 27431 1awqA 164 7.58e-39 2cpl b.62.1.1 27461 2cpl 165 1.06e-38 2cpl b.62.1.1 27420 1yndA 165 1.21e-38 1zcxA 178 5.56e-38 2cfeA 162 1.65e-37 2rmcA 182 2.33e-37 2cpl b.62.1.1 27491 1xo7A 166 2.47e-37 1vdnA 162 2.60e-37 1qoiA 177 6.91e-37 2cpl b.62.1.1 27490 1h0pA 182 4.33e-36 b.62.1.1 76450 2a2nA 176 5.90e-35 1zkcA 197 6.42e-35 1xwnA 174 1.30e-33 2fu0A 160 3.49e-33 2b71A 196 6.45e-33 1j2aA 166 3.01e-30 b.62.1.1 90779 1v9tA 166 5.07e-30 b.62.1.1 108451 1lopA 164 6.93e-29 2cpl b.62.1.1 27510 1zx8A 136 9.69e-02 1wu7A 434 1.57e-01 1g7fA 298 8.88e-01 1pty c.45.1.2 60330 2f71A 298 1.60e+00 1mxiA 160 1.97e+00 c.116.1.1 79646 1vr0A 247 2.07e+00 1gggA 226 2.31e+00 1lst c.94.1.1 35817 1pa1A 310 2.96e+00 c.45.1.2 94404 1ptvA 321 2.98e+00 1pty c.45.1.2 32665 1mdbA 539 4.58e+00 e.23.1.1 79008 1qmpA 130 5.03e+00 1dz3A c.23.1.1 31106 1wdnA 226 6.29e+00 1lst c.94.1.1 35816 1dz3A 130 6.55e+00 1dz3A c.23.1.1 31105 1b77A 228 6.60e+00 1b77A d.131.1.2,d.131.1.2 41362,41363 1qwgA 251 7.11e+00 c.1.27.1 96473 1o04A 500 8.50e+00 c.82.1.1 86508 1vqvA 306 8.67e+00 1do6A 124 8.91e+00 1do6A b.1.13.1 22361 1xhnA 184 9.48e+00 2gk3A 256 9.55e+00 1dqiA 124 1.08e+01 1do6A b.1.13.1 22357 1wriA 93 1.31e+01 1a8s 273 1.32e+01 1brt c.69.1.12 34710 1k87A 669 1.33e+01 a.176.1.1,c.1.23.2 77286,77287 1h7wA 1025 1.34e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1f0iA 504 1.42e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1v0wA 506 1.46e+01 d.136.1.2,d.136.1.2 108220,108221 1gteA 1025 1.52e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1pfo 500 1.61e+01 1pfo f.9.1.1 43826 2cy7A 396 1.64e+01 1zoiA 276 1.66e+01 1m3iA 471 1.70e+01 f.9.1.1 91178 1h7sA 365 1.72e+01 d.14.1.3,d.122.1.2 65705,65706 1cbjA 151 1.82e+01 1mfmA b.1.8.1 22213 2as9A 210 1.82e+01 1q0eA 152 1.87e+01 b.1.8.1 95504 1p42A 270 1.87e+01 d.14.1.7,d.14.1.7 87754,87755 1wggA 96 2.06e+01 2b8mA 117 2.10e+01 1erjA 393 2.11e+01 1erjA b.69.4.1 27660 1e9pA 151 2.15e+01 1mfmA b.1.8.1 22215 1rc9A 221 2.25e+01 1s8nA 205 2.26e+01 c.23.1.1 105374 2b7yA 182 2.29e+01 1tllA 688 2.31e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1vjvA 415 2.32e+01 d.3.1.9 108632 2cy5A 140 2.36e+01 2azpA 318 2.60e+01 1wchA 315 2.63e+01 1pjcA 361 2.67e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1z4vA 532 2.79e+01 1wloA 136 2.89e+01 1z4xA 532 2.98e+01 1lq9A 112 3.01e+01 d.58.4.3 78129 1vqoD 177 3.16e+01 1zoxA 113 3.19e+01 1gowA 489 3.21e+01 1qvbA c.1.8.4 28981 1usuB 170 3.29e+01 d.83.2.1 99886 1sq2N 113 3.39e+01 b.1.1.1 105881 1v9sA 208 3.39e+01 1o5oA 221 3.39e+01 c.61.1.1 92509 1wi1A 126 3.46e+01 2b0aA 186 3.48e+01 1lam 484 3.57e+01 1lam c.50.1.1,c.56.5.3 33166,33829 2bf6A 449 3.63e+01 1c4rA 182 3.74e+01 1c4rA b.29.1.4 24229 1u0sY 118 3.86e+01 c.23.1.1 107566 1tmy 120 3.88e+01 1dbwA c.23.1.1 31083 1a70 97 3.94e+01 1awd d.15.4.1 37678 1crzA 403 4.20e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1j58A 385 4.26e+01 b.82.1.2 71531 1oalA 151 4.34e+01 b.1.8.1 86739 1xeaA 323 4.56e+01 c.2.1.3,d.81.1.5 109572,109573 1pv5A 264 4.67e+01 d.251.1.1 95150 1kv9A 668 4.74e+01 a.3.1.6,b.70.1.1 73056,73057 2g6yA 217 4.90e+01 1wraA 308 4.93e+01 1ww9A 392 5.00e+01 1lylA 504 5.10e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1vi2A 300 5.14e+01 c.2.1.7,c.58.1.5 100726,100727 1vi6A 208 5.44e+01 c.23.15.1 100736 1oxsC 353 5.46e+01 b.40.6.3,c.37.1.12 87519,87520 1e30A 155 5.46e+01 1rcy b.6.1.1 23016 1yymG 313 5.49e+01 1i12A 160 5.62e+01 1i21A d.108.1.1 61515 1u69A 163 5.67e+01 d.32.1.7 107699 1g1tA 157 5.77e+01 d.169.1.1,g.3.11.1 65104,65105 2ex4A 241 5.83e+01 1lb6A 160 5.86e+01 b.8.1.1 73798 2a46A 238 5.90e+01 1f20A 435 5.92e+01 b.43.4.1,c.25.1.4 64932,64933 1us5A 314 5.93e+01 c.94.1.1 99856 1r64A 481 5.95e+01 b.18.1.20,c.41.1.1 97140,97141 2aaa 484 6.01e+01 7taa b.71.1.1,c.1.8.1 27777,28764 2coeA 120 6.01e+01 1khbA 625 6.07e+01 c.91.1.1,c.109.1.1 68606,68607 1q1oA 98 6.11e+01 d.15.2.2 95596 1a88A 275 6.18e+01 1brt c.69.1.12 34707 1o9wA 177 6.37e+01 b.2.3.5 86713 1i1dA 161 6.39e+01 1i21A d.108.1.1 61526 1uwsA 489 6.48e+01 c.1.8.4 108073 1ydxA 406 6.51e+01 1oxxK 353 6.58e+01 b.40.6.3,c.37.1.12 93715,93716 1e1oA 504 6.79e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1qf6A 642 6.86e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1df7A 159 6.97e+01 3dfr c.71.1.1 34885 1qcsA 211 7.06e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1op4A 159 7.09e+01 b.1.6.1 93397 1a04A 215 7.16e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1eb7A 323 7.17e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 1llnA 262 7.24e+01 d.165.1.1 84625 1o7iA 119 7.35e+01 b.40.4.3 86642 1l1jA 239 7.37e+01 b.47.1.1 84516 1nbfA 353 7.40e+01 d.3.1.9 80387 2gefA 217 7.40e+01 2b49A 287 7.41e+01 2f9sA 151 7.50e+01 1h4xA 117 7.56e+01 1auz c.13.2.1 60626 1dkiA 371 7.60e+01 1dkiA d.3.1.1 37090 1f7dA 136 7.65e+01 1dun b.85.4.1 28353 1u8sA 192 7.66e+01 d.58.18.5,d.58.18.5 107737,107738 1d7yA 408 7.69e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1frrA 95 7.71e+01 1awd d.15.4.1 37674 1w96A 554 7.73e+01 1mveA 243 7.73e+01 b.29.1.2 85140 1vl6A 388 7.91e+01 c.2.1.7,c.58.1.3 108724,108725 2calA 154 8.00e+01 1x36A 237 8.04e+01 1oa4A 222 8.12e+01 b.29.1.11 86731 1sznA 417 8.19e+01 b.71.1.1,c.1.8.1 106162,106163 1u2cA 246 8.20e+01 b.1.6.2,d.272.1.1 107610,107611 1esl 162 8.26e+01 1esl d.169.1.1,g.3.11.1 42353,44225 1dkgA 197 8.27e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 8acn 754 8.48e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1nbwB 117 8.63e+01 c.51.3.2 80396 1y7mA 164 8.87e+01 1wisA 124 8.94e+01 1qwtA 255 8.98e+01 b.26.1.3 96501