# List of top-scoring protein chains for T0289.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yw6A 335 2.00e-38 2g9dA 350 1.53e-36 2bcoA 350 6.24e-36 1yw4A 341 5.92e-33 1h8lA 380 5.69e-03 b.3.2.1,c.56.5.1 65737,65738 1uwyA 426 1.15e-02 b.3.2.1,c.56.5.1 100130,100131 1h4pA 408 1.13e-01 c.1.8.3 90617 1jqgA 433 6.61e-01 c.56.5.1,d.58.3.1 71791,71792 1w61A 414 9.18e-01 1ycsB 239 1.51e+00 1ycsB d.211.1.1,b.34.2.1 19155,24553 1qh8B 519 2.44e+00 1qguB c.92.2.3 35634 1m1nB 522 2.67e+00 c.92.2.3 78418 1g20B 523 2.67e+00 1qguB c.92.2.3 35614 2d2aA 145 2.81e+00 2c8sA 172 2.87e+00 1xbsA 149 4.07e+00 1mhmA 288 4.64e+00 1vm8A 534 6.46e+00 1f7wA 144 9.69e+00 1f46A d.129.4.1 59679 1qm4A 396 1.00e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 1oysA 245 1.04e+01 d.14.1.4,d.101.1.1 93758,93759 1oypA 245 1.04e+01 d.14.1.4,d.101.1.1 93734,93735 2c1cA 312 1.09e+01 1si8A 484 1.10e+01 e.5.1.1 98884 1f47B 144 1.11e+01 1f46A d.129.4.1 59645 1y2gA 140 1.17e+01 1x7vA 99 1.17e+01 d.58.4.11 109501 1qmoA 113 1.18e+01 1nls b.29.1.1 24106 2f9cA 334 1.20e+01 1y2fA 139 1.21e+01 1f46A 140 1.34e+01 1f46A d.129.4.1 59643 1y56A 493 1.36e+01 1jv1A 505 1.42e+01 c.68.1.5 71892 1jvgA 522 1.43e+01 c.68.1.5 77185 1u29A 129 1.46e+01 1csp 67 1.63e+01 1mjc b.40.4.5 25321 1mjc 69 1.71e+01 1mjc b.40.4.5 25319 1ohzA 162 1.90e+01 b.2.2.2 93043 1hz9A 66 1.91e+01 b.40.4.5 65961 1hzcA 66 1.93e+01 b.40.4.5 65967 2c5mA 294 2.12e+01 1gxoA 332 2.15e+01 a.102.5.1 76374 1gxmA 332 2.16e+01 a.102.5.1 76371 1fp3A 402 2.19e+01 1fp3A a.102.1.3 18842 1m75A 302 2.26e+01 a.100.1.3,c.2.1.6 91212,91213 1ttuA 477 2.33e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 3hdhA 302 2.40e+01 2hdhA a.100.1.3,c.2.1.6 18805,30209 2hdhA 293 2.41e+01 2hdhA a.100.1.3,c.2.1.6 18795,30199 1lpbB 449 2.44e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 1il0A 302 2.46e+01 a.100.1.3,c.2.1.6 66189,66190 1vpbA 451 2.48e+01 1yixA 265 2.53e+01 1u2bA 138 2.54e+01 1f0yA 302 2.54e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 3hadA 308 2.55e+01 2hdhA a.100.1.3,c.2.1.6 18799,30203 1f17A 310 2.55e+01 2hdhA a.100.1.3,c.2.1.6 18797,30201 1lsjA 302 2.55e+01 a.100.1.3,c.2.1.6 91116,91117 1hzbA 66 2.56e+01 b.40.4.5 65965 1c9oA 66 2.57e+01 1mjc b.40.4.5 25325 1midA 91 2.58e+01 a.52.1.1 91280 1hzaA 67 2.60e+01 b.40.4.5 65963 1i5fA 66 2.61e+01 b.40.4.5 66034 1t2wA 145 2.82e+01 b.100.1.1 106289 1t2oA 146 2.83e+01 b.100.1.1 106280 1hxmB 242 3.06e+01 8fabA b.1.1.1,b.1.1.2 61369,61370 1lsoA 302 3.16e+01 a.100.1.3,c.2.1.6 91120,91121 1t2pA 146 3.19e+01 b.100.1.1 106283 1ijaA 148 3.21e+01 1ijaA b.100.1.1 62484 1m76A 302 3.27e+01 a.100.1.3,c.2.1.6 91216,91217 1tmmA 158 3.51e+01 1y13A 181 3.56e+01 1s55A 156 3.66e+01 1iqaA 160 3.69e+01 b.22.1.1 71274 2bo9A 308 3.70e+01 2boaA 404 3.72e+01 1rtzA 152 3.78e+01 d.58.30.1 97831 1htqA 477 3.85e+01 d.15.9.1,d.128.1.1 71035,71036 2bvcA 486 3.98e+01 1jtzX 171 4.32e+01 b.22.1.1 63286 1t5aA 567 4.34e+01 1yp5A 58 4.59e+01 1o0wA 252 4.59e+01 a.149.1.1,d.50.1.1 80751,80752 1g6pA 66 4.65e+01 b.40.4.5 65168 2visC 282 4.67e+01 1hgeA b.19.1.2 23807 1hq2A 158 4.75e+01 d.58.30.1 83620 1m50A 365 4.93e+01 b.75.1.1 78632 1ksaA 366 4.96e+01 4bcl b.75.1.1 27969 1xan 461 5.09e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30449,30450,40156 1k4qA 461 5.10e+01 c.3.1.5,c.3.1.5,d.87.1.1 68140,68141,68142 1kt0A 457 5.11e+01 a.118.8.1,d.26.1.1,d.26.1.1 77525,77526,77527 1f9yA 158 5.20e+01 d.58.30.1 83249 3grs 478 5.22e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2aaqA 479 5.23e+01 5grt 461 5.28e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30465,30466,40164 2virC 282 5.34e+01 1hgeA b.19.1.2 23812 1pbyA 489 5.36e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 3hmgA 328 5.37e+01 1hgeA b.19.1.2 23825 1mioB 458 5.37e+01 1qguB c.92.2.3 35602 2vitC 282 5.42e+01 1hgeA b.19.1.2 23808 1chmA 401 5.45e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1zcbA 362 5.49e+01 1grt 478 5.49e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30467,30468,40165 1vywB 265 5.62e+01 a.74.1.1,a.74.1.1 108923,108924 2conA 79 5.79e+01 1izmA 184 5.82e+01 a.199.1.1 90725 2cxaA 256 5.83e+01 1mqmA 329 5.86e+01 b.19.1.2 91406 1vl4A 447 5.93e+01 d.283.1.1 108718 1f9hA 158 5.94e+01 d.58.30.1 83248 1va7A 70 6.12e+01 1hgeA 328 6.21e+01 1hgeA b.19.1.2 23816 1ruwA 69 6.22e+01 1yqfA 203 6.25e+01 1wu8A 256 6.26e+01 1aj1 19 6.36e+01 j.2.1.1 46061 1eqpA 394 6.37e+01 1cz1A c.1.8.3 28812 2hmgA 328 6.41e+01 1hgeA b.19.1.2 23828 1bynA 128 6.44e+01 1rsy b.7.1.2 23193 1hgjA 328 6.48e+01 1hgeA b.19.1.2 23801 2viuA 328 6.49e+01 1hgeA b.19.1.2 23797 1pjuA 123 6.51e+01 g.69.1.1,g.69.1.1 94784,94785 1o9wA 177 6.59e+01 b.2.3.5 86713 1o9zA 177 6.61e+01 b.2.3.5 86717 1wceA 441 6.63e+01 1zxfA 155 6.79e+01 2esvE 240 6.88e+01 1wcdJ 441 7.03e+01 1k76A 62 7.19e+01 b.34.2.1 84343 1rsy 152 7.30e+01 1rsy b.7.1.2 23192 2bykA 140 7.38e+01 1eqcA 394 7.47e+01 1cz1A c.1.8.3 28811 1n7vA 555 7.56e+01 b.126.1.1 85377 1n7uA 554 7.65e+01 b.126.1.1 85376 2azpA 318 7.74e+01 1xxxA 303 8.00e+01 1o4tA 133 8.09e+01 b.82.1.9 86622 1dghA 498 8.14e+01 1cf9A e.5.1.1 42790 1dgfA 497 8.15e+01 1cf9A e.5.1.1 42782 1f4jA 527 8.27e+01 1cf9A e.5.1.1 42798 1j72A 347 8.29e+01 d.109.1.1,d.109.1.1,d.109.1.1 84127,84128,84129 1rlkA 117 8.32e+01 c.131.1.1 97651 1dghB 498 8.39e+01 1cf9A e.5.1.1 42791 1tbfA 347 8.48e+01 a.211.1.2 106743 1do5A 154 8.67e+01 1mfmA b.1.8.1 22303 1c17M 177 8.70e+01 1c17M f.18.1.1 43648 1oupA 213 8.80e+01 d.4.1.6 93555 1lb3A 182 8.98e+01 a.25.1.1 77873