# List of top-scoring protein chains for T0289.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h8lA 380 2.12e-33 b.3.2.1,c.56.5.1 65737,65738 1uwyA 426 1.02e-28 b.3.2.1,c.56.5.1 100130,100131 1yw6A 335 5.90e-26 2g9dA 350 7.47e-26 1yw4A 341 8.72e-25 2bcoA 350 2.17e-24 1cpb 306 2.17e-23 1aye c.56.5.1 33826 1zliA 309 2.22e-22 2bo9A 308 2.57e-22 1z5rA 306 1.67e-21 2c1cA 312 1.85e-21 2boaA 404 3.57e-21 1kwmA 402 7.10e-21 c.56.5.1,d.58.3.1 73079,73080 1nsa 395 2.54e-20 1aye c.56.5.1,d.58.3.1 33825,39066 1dtdA 303 2.89e-19 1aye c.56.5.1 33823 1obr 326 8.00e-19 1aye c.56.5.2 33828 1yme 309 3.32e-18 1aye c.56.5.1 33804 1m4lA 307 3.37e-18 c.56.5.1 78604 1pytB 309 4.34e-18 1aye c.56.5.1 33820 2ctc 307 4.40e-18 1aye c.56.5.1 33802 1aye 401 8.26e-18 1aye c.56.5.1,d.58.3.1 33824,39065 1cbx 307 1.04e-17 1aye c.56.5.1 33813 1bavA 309 1.19e-17 1aye c.56.5.1 33806 5cpa 307 1.21e-17 1aye c.56.5.1 33811 1jqgA 433 1.40e-16 c.56.5.1,d.58.3.1 71791,71792 1pca 403 7.06e-16 1aye c.56.5.1,d.58.3.1 33822,39063 2c9aA 259 5.63e-01 1m22A 503 2.55e+00 c.117.1.1 78464 1eceA 358 3.13e+00 1eceA c.1.8.3 28813 1ev7A 317 3.74e+00 1ev7B c.52.1.9 33315 1kwgA 645 4.06e+00 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1lwjA 441 4.15e+00 b.71.1.1,c.1.8.1 74303,74304 1vrxA 358 4.36e+00 1v04A 355 4.83e+00 b.68.6.2 100240 1l3aA 227 6.11e+00 d.18.1.2 73531 1s58A 554 8.35e+00 b.121.5.2 105262 2fo3A 125 1.02e+01 1xizA 159 1.17e+01 1yy3A 346 1.41e+01 1eq9A 222 1.55e+01 5ptp b.47.1.2 26068 1qy9A 297 1.78e+01 d.21.1.2,d.21.1.2 104645,104646 2belA 283 1.81e+01 1e58A 249 1.87e+01 1qhfA c.60.1.1 59262 1qyaA 307 1.89e+01 d.21.1.2,d.21.1.2 104653,104654 1v8gA 329 2.04e+01 a.46.2.1,c.27.1.1 100505,100506 1iakB 185 2.17e+01 1iakB b.1.1.2,d.19.1.1 21626,38200 1sdjA 310 2.27e+01 d.21.1.2,d.21.1.2 98807,98808 1mj1A 405 2.29e+01 i.1.1.1 79175 1d9kD 188 2.33e+01 1iakB b.1.1.2,d.19.1.1 21628,38202 1o4wA 147 2.69e+01 c.120.1.1 86629 1fobA 334 2.71e+01 c.1.8.3 83255 1h7eA 245 2.78e+01 c.68.1.13 60717 1okgA 373 2.96e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 6cgt 684 2.98e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 1brwA 433 3.09e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1m6sA 347 3.26e+01 c.67.1.1 78701 2bleA 367 3.52e+01 1xvbA 527 4.00e+01 4cgt 678 4.16e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 1fg9C 245 4.19e+01 1jrhI b.1.2.1,b.1.2.1 22060,22061 1vjtA 483 4.22e+01 c.2.1.5,d.162.1.2 100833,100834 1mtyD 512 4.32e+01 1mhyD a.25.1.2 16742 1f89A 291 4.34e+01 d.160.1.1 64988 1ds1A 324 4.42e+01 1drtA b.82.2.2 28127 1oxnA 140 4.42e+01 g.52.1.1 93704 1jwqA 179 4.53e+01 c.56.5.6 90921 1r8mE 203 4.54e+01 a.118.3.1 97242 2fm1A 355 4.55e+01 1fzdA 201 4.67e+01 3fib d.171.1.1 42484 1k2dB 189 4.85e+01 b.1.1.2,d.19.1.1 84293,84294 1senA 164 5.05e+01 c.47.1.1 105465 1rzwA 123 5.12e+01 1hjqA 332 5.17e+01 c.1.8.3 83491 1r4mB 431 5.19e+01 c.111.1.2 97000 1cpo 299 5.27e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1xu9A 286 5.48e+01 1s1iR 137 5.49e+01 i.1.1.1 105192 1r8sE 203 5.59e+01 a.118.3.1 97248 1pbv 195 5.60e+01 1pbv a.118.3.1 19179 1ji3A 388 5.70e+01 c.69.1.18 77115 2c6qA 351 5.72e+01 1es0B 221 5.76e+01 1iakB b.1.1.2,d.19.1.1 21644,38218 1e6lA 127 6.03e+01 3chy c.23.1.1 59307 8cgtA 684 6.06e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1cgt 684 6.07e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 1ve3A 227 6.09e+01 1q6wA 161 6.16e+01 d.38.1.4 96000 1fyhB 229 6.18e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 6chyA 128 6.25e+01 3chy c.23.1.1 31062 1nbaA 264 6.28e+01 1nbaA c.33.1.3 31753 1qmnA 401 6.35e+01 1ovaA e.1.1.1 42624 1hjsA 332 6.41e+01 c.1.8.3 83492 1d8cA 723 6.46e+01 1d8cA c.1.13.1 29325 2c78A 405 6.48e+01 1iizA 120 6.62e+01 d.2.1.2 66153 2genA 197 6.69e+01 5cgt 684 6.79e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 1f3jB 187 6.79e+01 1iakB b.1.1.2,d.19.1.1 21646,38220 1vlzA 128 6.80e+01 3chy c.23.1.1 31048 1tdwA 308 6.86e+01 2pahA 335 6.99e+01 4pah d.178.1.1 42581 1b23P 405 7.05e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25689,25729,32124 1i19A 561 7.36e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2chf 128 7.49e+01 3chy c.23.1.1 31079 1c7qA 445 7.51e+01 2pgi c.80.1.2 35307 1moq 368 7.57e+01 1moq c.80.1.1 35302 2a7rA 366 7.71e+01 1jd0A 263 7.83e+01 2cba b.74.1.1 62888 1p7tA 731 7.92e+01 c.1.13.1 94319 1dpe 507 8.01e+01 1dpe c.94.1.1 35799 1svb 395 8.08e+01 1svb b.1.18.4,f.10.1.1 21814,43827 1eft 405 8.12e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1flcA 432 8.12e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 2fjcA 156 8.19e+01 1gd6A 119 8.40e+01 3lzt d.2.1.2 60440 1tw6A 133 8.51e+01 1zosA 230 8.51e+01 1uktA 686 8.53e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99525,99526,99527,99528 1v3kA 686 8.56e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108313,108314,108315,108316 1pamA 686 8.56e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1k3vA 579 8.57e+01 b.121.5.2 68122 1d7fA 686 8.57e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21848,22517,27755,28742 1v3jA 686 8.58e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108305,108306,108307,108308 1uksA 686 8.59e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99517,99518,99519,99520 1tt5B 434 8.73e+01 c.111.1.2 107292 1xovA 326 8.78e+01 1tq5A 242 8.79e+01 2ad9A 119 8.83e+01 1c4wA 128 8.93e+01 3chy c.23.1.1 31046 1e6mA 128 8.94e+01 3chy c.23.1.1 31039 1v29A 220 8.99e+01