PFRMAT RR TARGET T0289 AUTHOR 5370-1100-4902 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.3xnearNS_str2.miRvp_pplR.n28.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 STSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRAGLEVKPF ITNPRAVEKCTRYIDCDLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFG PKNSDDAYDVVFDLHNTTSNMGCTLILEDSRNDFLIQMFHYIKTCMAPLP CSVYLIEHPSLKYATTRSIAKYPVGIEVGPQPHGVLRADILDQMRRMLKH ALDFIQRFNEGKEFPPCAIDVYKIMEKVDYPRNESGDVAAVIHPNLQDQD WKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKL TLNAKSIRSTLH 13 29 0 8 0.459271728477 13 30 0 8 0.468647186995 13 33 0 8 0.474864382876 13 34 0 8 0.446601478794 13 47 0 8 0.657925556009 13 48 0 8 0.616055861901 13 49 0 8 0.653769633464 13 50 0 8 0.627891798586 13 68 0 8 0.446001814512 13 110 0 8 0.61430743315 13 111 0 8 0.62716737172 13 112 0 8 0.634226448547 13 176 0 8 0.485591687612 13 260 0 8 0.533737773983 14 23 0 8 0.499899582278 14 24 0 8 0.533297064929 14 25 0 8 0.44823885999 14 27 0 8 0.552266926084 14 29 0 8 0.627614010841 14 30 0 8 0.635272237706 14 31 0 8 0.491402556194 14 32 0 8 0.518591292099 14 33 0 8 0.643545955067 14 34 0 8 0.565040959466 14 37 0 8 0.470865359855 14 42 0 8 0.442454864078 14 47 0 8 0.703548108091 14 48 0 8 0.640729949882 14 49 0 8 0.698133970463 14 50 0 8 0.668372553967 14 51 0 8 0.540256393619 14 56 0 8 0.447856095554 14 57 0 8 0.528956008362 14 68 0 8 0.497209768257 14 92 0 8 0.443182116505 14 95 0 8 0.511656754301 14 110 0 8 0.650272775962 14 111 0 8 0.676864144069 14 112 0 8 0.655932020424 14 174 0 8 0.487576617953 14 175 0 8 0.477001403069 14 176 0 8 0.540377467535 14 260 0 8 0.57598361791 14 261 0 8 0.444721680123 15 24 0 8 0.558417628123 15 25 0 8 0.536236739609 15 26 0 8 0.537403892159 15 27 0 8 0.551903704336 15 29 0 8 0.64729881304 15 30 0 8 0.647200770306 15 33 0 8 0.664848462372 15 34 0 8 0.602128346897 15 37 0 8 0.523146485871 15 42 0 8 0.470256714863 15 45 0 8 0.521534563437 15 47 0 8 0.747705465986 15 48 0 8 0.647576600786 15 49 0 8 0.733554631422 15 50 0 8 0.676864144069 15 51 0 8 0.539132827679 15 56 0 8 0.48338487684 15 57 0 8 0.575329999686 15 68 0 8 0.554490471956 15 92 0 8 0.480224579892 15 95 0 8 0.59298313857 15 110 0 8 0.690192509034 15 111 0 8 0.689827572192 15 112 0 8 0.702344361194 15 114 0 8 0.5396219663 15 142 0 8 0.435785923077 15 152 0 8 0.43867374695 15 174 0 8 0.558123499921 15 175 0 8 0.516715300461 15 176 0 8 0.59358228861 15 198 0 8 0.534086466861 15 201 0 8 0.497599816618 15 202 0 8 0.498886469653 15 260 0 8 0.628992055931 15 261 0 8 0.457594884579 16 27 0 8 0.46815888183 16 28 0 8 0.466124500635 16 32 0 8 0.43948871565 16 33 0 8 0.595717441477 16 47 0 8 0.667893233936 16 48 0 8 0.519229459343 16 49 0 8 0.679522191516 16 50 0 8 0.623518003299 16 111 0 8 0.604116435664 16 112 0 8 0.613730070385 17 50 0 8 0.574670934643 18 30 0 8 0.451533283822 18 111 0 8 0.464576729352 19 29 0 8 0.436924221751 19 33 0 8 0.44570410884 19 49 0 8 0.456341321665 19 111 0 8 0.439311548541 20 29 0 8 0.443186369443 20 30 0 8 0.445406403168 20 33 0 8 0.438190966578 30 47 0 8 0.452124791864 30 49 0 8 0.438430142175 33 42 0 8 0.469747256462 33 47 0 8 0.520142698674 33 48 0 8 0.434430594695 33 49 0 8 0.526287809112 33 50 0 8 0.448719442003 33 57 0 8 0.480752295512 33 68 0 8 0.453036473983 33 95 0 8 0.462515965693 34 68 0 8 0.43457675756 37 49 0 8 0.459369408704 45 111 0 8 0.448630130301 47 57 0 8 0.458484859981 47 68 0 8 0.466136226175 47 110 0 8 0.617711694737 47 111 0 8 0.633453000314 47 112 0 8 0.64301216685 47 114 0 8 0.43447931565 47 174 0 8 0.452900807001 47 175 0 8 0.438563017507 47 176 0 8 0.504965145407 47 260 0 8 0.54256164098 48 57 0 8 0.573619698665 48 68 0 8 0.509296201883 48 95 0 8 0.483318912388 48 110 0 8 0.660970327573 48 111 0 8 0.670518600471 48 112 0 8 0.677147378633 48 176 0 8 0.527311077278 48 260 0 8 0.519047911765 49 62 0 8 0.460916012299 49 63 0 8 0.452689166509 49 68 0 8 0.562731508405 49 69 0 8 0.462636152478 49 91 0 8 0.443734998467 49 92 0 8 0.491504501257 49 95 0 8 0.585210528515 49 110 0 8 0.695895328044 49 111 0 8 0.695633880754 49 112 0 8 0.69486587934 49 114 0 8 0.490203202513 49 152 0 8 0.467851086404 49 174 0 8 0.582301927416 49 175 0 8 0.521259491349 49 176 0 8 0.572503100864 49 198 0 8 0.493231570557 49 201 0 8 0.44430914512 49 260 0 8 0.59585361194 49 261 0 8 0.467097720457 50 62 0 8 0.511780507209 50 63 0 8 0.468615627625 50 68 0 8 0.59764561524 50 69 0 8 0.468516441034 50 72 0 8 0.442276240675 50 91 0 8 0.465330095299 50 92 0 8 0.507523254787 50 95 0 8 0.601616345954 50 110 0 8 0.704533982247 50 111 0 8 0.703335682168 50 112 0 8 0.701941296622 50 114 0 8 0.529214576125 50 115 0 8 0.434603332626 50 142 0 8 0.440817468966 50 174 0 8 0.544222775107 50 175 0 8 0.519493528547 50 176 0 8 0.569703436135 50 198 0 8 0.514058104095 50 201 0 8 0.473962686591 50 202 0 8 0.464327561626 50 260 0 8 0.609116615082 50 261 0 8 0.462167130877 51 60 0 8 0.516946361015 51 68 0 8 0.541689908785 51 95 0 8 0.492463984201 51 110 0 8 0.645092851532 51 111 0 8 0.662980203614 51 112 0 8 0.653513632993 52 68 0 8 0.51241317301 52 110 0 8 0.584235547997 52 111 0 8 0.641361780833 52 112 0 8 0.615097221838 57 68 0 8 0.452016258278 68 91 0 8 0.444921568217 68 92 0 8 0.43482922069 68 95 0 8 0.493663337882 68 110 0 8 0.459456235572 68 111 0 8 0.56297661524 68 112 0 8 0.53133566749 69 95 0 8 0.435475880637 69 111 0 8 0.484482285458 70 111 0 8 0.48657515763 71 111 0 8 0.496875441091 71 112 0 8 0.464928495553 72 111 0 8 0.445461691364 95 112 0 8 0.458240659413 99 110 0 8 0.441065502918 99 111 0 8 0.533665129634 99 112 0 8 0.537452321725 110 138 0 8 0.44191474093 110 142 0 8 0.454029556291 110 152 0 8 0.457578604541 110 174 0 8 0.577023960251 110 175 0 8 0.53547155246 110 176 0 8 0.566990920503 110 260 0 8 0.583914185703 110 261 0 8 0.464688121982 111 120 0 8 0.463395381194 111 121 0 8 0.467188593393 111 125 0 8 0.528081279123 111 126 0 8 0.470134985864 111 127 0 8 0.495642271454 111 138 0 8 0.582873843362 111 141 0 8 0.532289729948 111 142 0 8 0.575433489238 111 144 0 8 0.434842508223 111 146 0 8 0.471767056139 111 151 0 8 0.505512226225 111 152 0 8 0.557949201728 111 153 0 8 0.44361166326 111 165 0 8 0.455505613056 111 166 0 8 0.471978954766 111 174 0 8 0.664516206441 111 175 0 8 0.653557207541 111 176 0 8 0.677561336842 111 177 0 8 0.5081260568 111 191 0 8 0.46898081462 111 194 0 8 0.497842963648 111 195 0 8 0.444521792029 111 198 0 8 0.575531531972 111 201 0 8 0.582574268342 111 202 0 8 0.531369568187 111 205 0 8 0.484494278995 111 222 0 8 0.527635662341 111 239 0 8 0.532749810829 111 241 0 8 0.545535216356 111 260 0 8 0.639553437078 111 261 0 8 0.544406807459 111 276 0 8 0.472483904685 111 277 0 8 0.485849548654 112 121 0 8 0.506884993833 112 123 0 8 0.455662986755 112 124 0 8 0.480410479713 112 125 0 8 0.553243150511 112 126 0 8 0.522315768166 112 127 0 8 0.538299839137 112 138 0 8 0.579311624038 112 139 0 8 0.496140003232 112 141 0 8 0.515004352076 112 142 0 8 0.57240505813 112 146 0 8 0.443488328053 112 151 0 8 0.526089757209 112 152 0 8 0.580221242734 112 153 0 8 0.457177030274 112 166 0 8 0.454740451277 112 174 0 8 0.710656206284 112 175 0 8 0.649063582247 112 176 0 8 0.689506209898 112 177 0 8 0.541166869468 112 178 0 8 0.469039424879 112 190 0 8 0.465790322745 112 191 0 8 0.470874376817 112 194 0 8 0.541423546169 112 198 0 8 0.58709512773 112 201 0 8 0.592661776277 112 202 0 8 0.567611857816 112 205 0 8 0.49813676631 112 222 0 8 0.51058792048 112 239 0 8 0.532275201078 112 240 0 8 0.458354619678 112 260 0 8 0.673084052003 112 261 0 8 0.549729216805 112 269 0 8 0.484164456732 112 276 0 8 0.562998402514 112 277 0 8 0.481453917415 113 138 0 8 0.461301306528 113 198 0 8 0.442012558508 114 125 0 8 0.464134090216 114 127 0 8 0.452401552507 114 138 0 8 0.466634561626 114 142 0 8 0.453041900662 114 174 0 8 0.45630333491 114 176 0 8 0.490982782406 114 260 0 8 0.478890456785 166 176 0 8 0.436126969761 175 191 0 8 0.444249603986 175 198 0 8 0.516341202422 175 201 0 8 0.502320921454 175 202 0 8 0.455060625355 176 190 0 8 0.497640341123 176 191 0 8 0.460861745506 176 194 0 8 0.513711513264 176 198 0 8 0.58444797392 176 201 0 8 0.567938666929 176 202 0 8 0.508663006491 176 205 0 8 0.452157351939 176 260 0 8 0.468279068615 177 197 0 8 0.4458444558 177 198 0 8 0.48147190772 177 201 0 8 0.4681647446 177 202 0 8 0.444572827287 178 198 0 8 0.468696780291 178 201 0 8 0.465687724269 191 201 0 8 0.440285967639 198 207 0 8 0.44221669954 198 208 0 8 0.476068147415 242 260 0 8 0.49569624237 242 261 0 8 0.441211665782 260 269 0 8 0.452634899716 260 276 0 8 0.438912922546 260 277 0 8 0.450523921476 261 276 0 8 0.484038524596 261 277 0 8 0.519675076125 END