# List of top-scoring protein chains for T0289.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bo9A 308 3.28e-24 2boaA 404 3.96e-24 1dtdA 303 2.14e-23 1aye c.56.5.1 33823 1aye 401 3.25e-23 1aye c.56.5.1,d.58.3.1 33824,39065 1cpb 306 4.76e-22 1aye c.56.5.1 33826 1yme 309 6.78e-22 1aye c.56.5.1 33804 1m4lA 307 6.82e-22 c.56.5.1 78604 1pytB 309 1.09e-21 1aye c.56.5.1 33820 2ctc 307 1.10e-21 1aye c.56.5.1 33802 1zliA 309 1.83e-21 1bavA 309 2.26e-21 1aye c.56.5.1 33806 1cbx 307 2.26e-21 1aye c.56.5.1 33813 5cpa 307 2.27e-21 1aye c.56.5.1 33811 1kwmA 402 2.77e-21 c.56.5.1,d.58.3.1 73079,73080 1z5rA 306 4.12e-21 1pca 403 5.43e-21 1aye c.56.5.1,d.58.3.1 33822,39063 1h8lA 380 1.25e-20 b.3.2.1,c.56.5.1 65737,65738 1nsa 395 4.12e-20 1aye c.56.5.1,d.58.3.1 33825,39066 2c1cA 312 9.05e-19 1jqgA 433 4.67e-18 c.56.5.1,d.58.3.1 71791,71792 1obr 326 6.68e-18 1aye c.56.5.2 33828 1uwyA 426 3.23e-17 b.3.2.1,c.56.5.1 100130,100131 1yw6A 335 6.05e-17 1yw4A 341 1.99e-16 2g9dA 350 3.68e-14 2bcoA 350 6.85e-13 1d6mA 653 1.86e-01 1d6mA e.10.1.1 43248 1i7dA 659 2.69e-01 1d6mA e.10.1.1 61886 2acxA 576 2.85e+00 1m22A 503 8.22e+00 c.117.1.1 78464 2a7rA 366 8.93e+00 2c6qA 351 9.09e+00 1t16A 427 9.45e+00 f.4.3.4 106242 2c5uA 375 1.12e+01 1y7wA 291 1.25e+01 1wzkA 585 1.76e+01 2afwA 329 1.79e+01 2afsA 329 1.79e+01 2afuA 329 1.90e+01 1ei3A 491 1.91e+01 i.9.1.1 46001 1gzjA 304 1.94e+01 c.1.8.3 70813 1h1nA 305 1.98e+01 c.1.8.3 70855 1rwzA 245 2.10e+01 d.131.1.2,d.131.1.2 98005,98006 1jf6A 585 2.12e+01 b.1.18.2,b.71.1.1,c.1.8.1 71650,71651,71652 1wzmA 585 2.21e+01 1wzlA 585 2.22e+01 1vb9A 585 2.27e+01 1ji2A 585 2.28e+01 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1m1jA 491 2.28e+01 h.1.8.1 74369 1vfoA 585 2.49e+01 3btaA 1295 2.64e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24268,25613,40304,45784 1obaA 339 2.77e+01 b.109.1.1,c.1.8.8 92753,92754 1jf5A 585 2.95e+01 b.1.18.2,b.71.1.1,c.1.8.1 71644,71645,71646 1g1yA 585 2.96e+01 1bvzA b.1.18.2,b.71.1.1,c.1.8.1 60210,60211,60212 1ypxA 375 3.03e+01 1shxA 138 3.06e+01 1sp8A 418 3.48e+01 d.32.1.3,d.32.1.3 105868,105869 1v3eA 431 3.64e+01 b.68.1.1 100287 1rp5A 702 3.70e+01 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 97694,97695,97696,97697 1vjzA 341 3.74e+01 c.1.8.3 100838 2bwrA 401 3.81e+01 1gkrA 458 3.94e+01 b.92.1.3,c.1.9.6 70251,70252 1przA 252 4.08e+01 d.265.1.3 95064 1f3fA 155 4.12e+01 1npk d.58.6.1 39101 1h09A 338 4.56e+01 b.109.1.1,c.1.8.8 83420,83421 1q50A 561 4.59e+01 c.80.1.2 104535 1yy3A 346 4.64e+01 1t10A 605 4.69e+01 c.80.1.2 106235 1un2A 197 4.89e+01 c.47.1.13 99645 1z45A 699 5.01e+01 1e30A 155 5.02e+01 1rcy b.6.1.1 23016 1wxqA 397 5.12e+01 1gy2A 155 5.16e+01 b.6.1.1 70726 1u6gA 776 5.22e+01 2axjA 242 5.25e+01 1ldjA 760 5.28e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1fytE 245 5.31e+01 1bec b.1.1.1,b.1.1.2 20644,21573 1kijA 390 5.32e+01 d.14.1.3,d.122.1.2 72514,72515 2briA 225 5.34e+01 1j8hE 246 5.35e+01 b.1.1.1,b.1.1.2 71608,71609 2bmuA 226 5.56e+01 1ck7A 631 5.69e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 2bleA 367 5.72e+01 1rtg 210 5.74e+01 1gen b.66.1.1 27537 1v9fA 325 5.75e+01 d.265.1.3 108448 1hlwA 155 5.77e+01 1npk d.58.6.1 39100 1hhqA 155 5.89e+01 1npk d.58.6.1 61044 1npk 154 5.92e+01 1npk d.58.6.1 39099 1f6tA 155 5.96e+01 1npk d.58.6.1 39110 1ncl 150 6.11e+01 1npk d.58.6.1 39109 1hvxA 515 6.14e+01 1bli b.71.1.1,c.1.8.1 27721,28708 1ndk 155 6.70e+01 1npk d.58.6.1 39118 1mj4A 82 6.70e+01 d.120.1.1 79189 1p58A 495 6.77e+01 i.17.1.1 94127 1xeyA 466 6.84e+01 1mlwA 301 6.84e+01 d.178.1.1 79289 1qyuA 349 6.91e+01 d.265.1.3 96604 1c0aA 585 7.06e+01 1c0aA b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1pmmA 466 7.21e+01 c.67.1.6 94901 1ekqA 272 7.25e+01 1c3qA c.72.1.2 34941 1gen 218 7.29e+01 1gen b.66.1.1 27536 1il2A 590 7.32e+01 b.40.4.1,d.74.4.1,d.104.1.1 66193,66194,66195 1s31A 273 7.38e+01 1j1nA 492 7.46e+01 c.94.1.1 83978 1tg8A 395 7.63e+01 b.1.18.4,f.10.1.1 106892,106893 1ok8A 394 7.67e+01 b.1.18.4,f.10.1.1 93236,93237 1y57A 452 7.71e+01 1tgeA 395 7.74e+01 b.1.18.4,f.10.1.1 106894,106895 1wv2A 265 7.76e+01 1fmk 452 7.79e+01 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1xo6A 530 7.85e+01 1mhmA 288 7.88e+01 2ptk 453 7.91e+01 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24517,40457,41692 1dt9A 437 8.13e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1zr6A 503 8.29e+01 1r6dA 337 8.31e+01 c.2.1.2 97148 1xnwA 530 8.40e+01 1vclA 432 8.43e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1w9xA 481 8.46e+01 1j1iA 296 8.54e+01 c.69.1.10 83977 1yh1A 359 8.77e+01 1y6iA 233 8.85e+01 1c8zA 265 8.93e+01 1c8zA d.23.1.1 38375