# List of top-scoring protein chains for T0289.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yw6A 335 2.86e-29 2bcoA 350 2.04e-28 2g9dA 350 5.31e-28 1yw4A 341 6.76e-27 1uwyA 426 1.74e-03 b.3.2.1,c.56.5.1 100130,100131 1h8lA 380 4.75e-03 b.3.2.1,c.56.5.1 65737,65738 1jqgA 433 4.59e-01 c.56.5.1,d.58.3.1 71791,71792 2bo9A 308 1.79e+00 2c1cA 312 2.00e+00 2boaA 404 2.09e+00 1si8A 484 2.15e+00 e.5.1.1 98884 1mhmA 288 2.44e+00 1fp3A 402 2.47e+00 1fp3A a.102.1.3 18842 1gnxA 479 2.81e+00 c.1.8.4 76241 1vpbA 451 3.22e+00 1po5A 476 3.54e+00 a.104.1.1 94963 1mjc 69 3.55e+00 1mjc b.40.4.5 25319 1suoA 476 3.56e+00 a.104.1.1 106026 1vywB 265 3.65e+00 a.74.1.1,a.74.1.1 108923,108924 1f7wA 144 3.78e+00 1f46A d.129.4.1 59679 1gxoA 332 3.83e+00 a.102.5.1 76374 1gxmA 332 3.92e+00 a.102.5.1 76371 1f47B 144 3.97e+00 1f46A d.129.4.1 59645 1y2gA 140 4.48e+00 1y2fA 139 4.61e+00 2ahxA 617 4.72e+00 1f46A 140 4.74e+00 1f46A d.129.4.1 59643 2c5sA 413 5.14e+00 1xbsA 149 5.64e+00 2btjA 222 5.80e+00 1o0wA 252 6.92e+00 a.149.1.1,d.50.1.1 80751,80752 1zp6A 191 1.01e+01 1vin 268 1.17e+01 1vin a.74.1.1,a.74.1.1 18354,18355 2g86A 316 1.73e+01 1tlhB 81 1.93e+01 1vl4A 447 2.01e+01 d.283.1.1 108718 3hdhA 302 2.16e+01 2hdhA a.100.1.3,c.2.1.6 18805,30209 2azkA 289 2.16e+01 1o9zA 177 2.21e+01 b.2.3.5 86717 1o9wA 177 2.21e+01 b.2.3.5 86713 1midA 91 2.33e+01 a.52.1.1 91280 1ttuA 477 2.35e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1njd 316 2.39e+01 1bkpA d.117.1.1 41004 2cchB 260 2.45e+01 1sdmA 369 2.45e+01 c.37.1.9 105438 1jmg 316 2.53e+01 1bkpA d.117.1.1 41008 1tsw 316 2.55e+01 1bkpA d.117.1.1 40991 1oiuB 260 2.61e+01 a.74.1.1,a.74.1.1 103959,103960 1vze 316 2.63e+01 1bkpA d.117.1.1 41003 1tdb 315 2.68e+01 1bkpA d.117.1.1 41025 1vza 316 2.68e+01 1bkpA d.117.1.1 41017 1nje 316 2.68e+01 1bkpA d.117.1.1 41001 1tsy 316 2.68e+01 1bkpA d.117.1.1 40990 1bp0A 316 2.71e+01 1bkpA d.117.1.1 40993 2d2aA 145 2.71e+01 1bo7A 316 2.77e+01 1bkpA d.117.1.1 40997 1tsx 316 2.78e+01 1bkpA d.117.1.1 41002 1bp6A 316 2.80e+01 1bkpA d.117.1.1 41000 1bf5A 575 2.80e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1bo8A 316 2.82e+01 1bkpA d.117.1.1 40994 1t8qA 336 2.83e+01 c.1.18.3 106669 1bpjA 316 2.86e+01 1bkpA d.117.1.1 40996 1m75A 302 2.87e+01 a.100.1.3,c.2.1.6 91212,91213 2hdhA 293 2.91e+01 2hdhA a.100.1.3,c.2.1.6 18795,30199 2g8aA 316 2.95e+01 1ydyA 356 3.00e+01 3hadA 308 3.09e+01 2hdhA a.100.1.3,c.2.1.6 18799,30203 1jmi 316 3.16e+01 1bkpA d.117.1.1 41006 1f0yA 302 3.16e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1lsjA 302 3.19e+01 a.100.1.3,c.2.1.6 91116,91117 1f17A 310 3.21e+01 2hdhA a.100.1.3,c.2.1.6 18797,30201 2g89A 316 3.33e+01 2g8dA 316 3.37e+01 1uf9A 203 3.61e+01 c.37.1.1 99326 1xvlA 321 3.65e+01 1il0A 302 3.77e+01 a.100.1.3,c.2.1.6 66189,66190 2bgiA 272 3.78e+01 2c5nB 259 3.88e+01 1lsoA 302 3.88e+01 a.100.1.3,c.2.1.6 91120,91121 1nltA 248 4.34e+01 b.4.1.1,b.4.1.1,g.54.1.1 91963,91964,91965 1sxjE 354 4.52e+01 a.80.1.1,c.37.1.20 106089,106090 1zy9A 564 4.72e+01 1aj1 19 4.73e+01 j.2.1.1 46061 1w61A 414 4.82e+01 1xxxA 303 4.82e+01 1ya8A 532 5.09e+01 1o04A 500 5.10e+01 c.82.1.1 86508 1zumA 500 5.11e+01 1o02A 500 5.11e+01 c.82.1.1 86499 1cw3A 494 5.11e+01 1bpwA c.82.1.1 35349 1yqdA 366 5.12e+01 1mx1A 548 5.13e+01 c.69.1.1 85165 1zbqA 327 5.18e+01 1eqpA 394 5.29e+01 1cz1A c.1.8.3 28812 1m76A 302 5.31e+01 a.100.1.3,c.2.1.6 91216,91217 1gz6A 319 5.60e+01 c.2.1.2 76410 1wdwB 385 5.77e+01 1aye 401 5.80e+01 1aye c.56.5.1,d.58.3.1 33824,39065 1k4yA 534 5.99e+01 c.69.1.1 72069 1dtdA 303 6.17e+01 1aye c.56.5.1 33823 1obr 326 6.42e+01 1aye c.56.5.2 33828 1c3mA 147 6.43e+01 1jotA b.77.3.1 27983 2govA 195 6.47e+01 1wmzA 140 6.75e+01 d.169.1.1 109422 1rwzA 245 6.85e+01 d.131.1.2,d.131.1.2 98005,98006 1rkiA 102 6.86e+01 1ydhA 216 6.86e+01 1w9eA 166 7.08e+01 1h1rB 258 7.16e+01 a.74.1.1,a.74.1.1 76490,76491 1e9hB 261 7.18e+01 a.74.1.1,a.74.1.1 64813,64814 1x7vA 99 7.19e+01 d.58.4.11 109501 1og7A 43 7.19e+01 j.106.1.1 92865 1ag8A 499 7.28e+01 1bpwA c.82.1.1 35341 1jmf 316 7.40e+01 1bkpA d.117.1.1 41007 1z2aA 168 7.49e+01 1fvjA 189 7.53e+01 1fvkA c.47.1.13 90349 1acvA 189 7.59e+01 1fvkA c.47.1.13 90328 1fvkA 189 7.64e+01 1fvkA c.47.1.13 90351 1ac1A 189 7.72e+01 1fvkA c.47.1.13 90326 1jkw 323 7.80e+01 1jkw a.74.1.1,a.74.1.1 18356,18357 1u3aA 189 7.90e+01 1kxu 333 8.00e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1jmh 316 8.02e+01 1bkpA d.117.1.1 41009 1xbfA 140 8.04e+01 d.273.1.1 109538 1eqcA 394 8.07e+01 1cz1A c.1.8.3 28811 1z2zA 446 8.28e+01 1wpxA 421 8.28e+01 1vmhA 144 8.37e+01 1jvbA 347 8.47e+01 b.35.1.2,c.2.1.1 77181,77182 1dy6A 267 8.51e+01 1btl e.3.1.1 42732 1cpy 421 8.57e+01 1ivyA c.69.1.5 34651 1tlfA 301 8.63e+01 1tlfA c.93.1.1 35687 1r8gA 372 8.66e+01 d.128.1.3 104845 1iab 200 8.94e+01 1iae d.92.1.8 40312 1b0aA 288 8.96e+01 1a4iA c.2.1.7,c.58.1.2 30286,33934 1un2A 197 8.99e+01 c.47.1.13 99645